LOCUS       NM_001108066            2387 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus AT-rich interaction domain 3A (Arid3a), mRNA.
ACCESSION   NM_001108066 XM_001076973 XM_234884
VERSION     NM_001108066.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Tidwell,J.A., Schmidt,C., Heaton,P., Wilson,V. and Tucker,P.W.
  TITLE     Characterization of a new ARID family transcription factor
            (Brightlike/ARID3C) that co-activates Bright/ARID3A-mediated
            immunoglobulin gene transcription
  JOURNAL   Mol Immunol 49 (1-2), 260-272 (2011)
   PUBMED   21955986
REFERENCE   2  (bases 1 to 2387)
  AUTHORS   Nixon,J.C., Rajaiya,J. and Webb,C.F.
  TITLE     Mutations in the DNA-binding domain of the transcription factor
            Bright act as dominant negative proteins and interfere with
            immunoglobulin transactivation
  JOURNAL   J Biol Chem 279 (50), 52465-52472 (2004)
   PUBMED   15456761
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168846.1.
            
            On Mar 6, 2009 this sequence version replaced NM_001108066.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168846.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2387
                     /gene="Arid3a"
                     /note="AT-rich interaction domain 3A"
                     /db_xref="GeneID:314616"
                     /db_xref="RGD:1305299"
     exon            1..67
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            68..700
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             330..2114
                     /gene="Arid3a"
                     /note="dead ringer homolog 1; AT rich interactive domain
                     3A (Bright like)"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein
                     3A"
                     /protein_id="NP_001101536.2"
                     /db_xref="GeneID:314616"
                     /db_xref="RGD:1305299"
                     /translation="MKLQAVMETLIQRQQRARQELEARQPPLPPPPEPAGVQARTTMT
                     DEDREPENARMHRTQMAALAAMRAAAAGLRHPSSPGGSEDEDTAQGGTLSSPALHGSG
                     QEGPGHTEGDGHLMDMGSDDDTKPKWEEQELEELGEEEEEEDEDDFEEEEEDEEEEGL
                     GLPESASLGSAGLFTRKAPPTQTFRGDGGPRMLSGPERLGPGPAHPSHVASQMPPPDH
                     GDWTFEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVL
                     VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPN
                     ELQAAIDSNRREGRRQSFGGSLFAYSPSGAHSMLSSPKLPVTSLGLAASTNGSSITPT
                     PKIKKEEDSAIPITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREK
                     LESTEPPEKKMALVADEQQRLMQRAVQQSFLAMTAQLPMNIRINSQASESRQDPAVNL
                     TSANGSNSISMSVEMNGIVYTGVLFAQPPPPTPPPASSKGGVSSIGTNNTMGNRTGAS
                     GSAGSSGQVGLAGVSAPTMSSTSNNSLP"
     exon            701..1016
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1089
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1273
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1521
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1818
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1819..1917
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2365
                     /gene="Arid3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagagattcc cttggtgtcc actgcagtga ccctggtcct gaggaacctg cagacaggca
       61 gatgagggag tctgcaggtg cttgaatgag cccgacacca gcctctgccc ctgggtgccc
      121 gacgtaacaa caaggatccc actggtcgcc cctggcatgc cccaccagcc ttcaccctga
      181 gttggcagcc cccacccctg ccagccgtca ccctgcattg ttccggctcc cccgaagtcc
      241 ccacgctgca gtgcggccaa gacccctccc cacgggggcc acccccacca agtgcccctg
      301 gtgcccgggg tggcccggcc cgtcgggcca tgaagctgca ggcagtgatg gagactctta
      361 ttcagaggca acagcgagcc cggcaggaac tggaggctcg acagcctcca ctacccccac
      421 caccggagcc cgctggtgtc caggctcgga ccaccatgac agatgaggac agggagcctg
      481 agaatgcccg tatgcatagg acgcagatgg ctgcactggc tgccatgcgg gctgctgccg
      541 ccggcttgag acatccgtcc tctcccgggg gctcggagga cgaagacaca gcccagggag
      601 ggactctgag ttcacctgcc ctgcatggaa gtggccagga gggaccggga cacactgagg
      661 gagacggcca tttgatggac atgggctccg atgatgacac gaagcccaag tgggaagaac
      721 aagagctgga agaactgggg gaagaggaag aggaggagga tgaagatgac tttgaggaag
      781 aagaggagga tgaggaggaa gaaggcctgg gcctcccaga gtctgccagc ctgggctccg
      841 caggcctgtt tacccgcaag gccccaccta ctcagacctt ccgtggagac ggtggtccca
      901 gaatgctcag tggccctgag cgcctgggac ctggcccggc ccaccccagt catgtggcgt
      961 cccagatgcc accaccggac catggggact ggacatttga ggagcagttc aaacagctct
     1021 atgaactgga cgcagacccc aagaggaaag agttcctgga cgacctgttc agcttcatgc
     1081 agaagcgggg cactccggtg aaccggatcc ccatcatggc caagcaggtc ctcgacctgt
     1141 tcatgctgta tgtgctggtg acggaaaagg gcggtctggt agaggttatc aacaagaagc
     1201 tgtggaggga gatcaccaag gggctcaacc tgcccacctc catcaccagt gctgccttca
     1261 cacttcggac acagtacatg aagtatcttt acccctatga gtgtgagagg cgaggcctga
     1321 gcagccccaa tgagctccag gctgccatag acagcaaccg ccgggagggc aggcgccaga
     1381 gcttcggggg ctccctcttt gcttactcac ccagtggagc ccacagcatg ctgtcctcac
     1441 ccaagctacc ggtgacttct ttgggccttg ctgccagcac caatggcagc tctatcaccc
     1501 caacacccaa gatcaagaaa gaggaagact cagccatccc catcacagtc ccaggccgcc
     1561 tacccgtgtc tctggcaggc caccctgtcg tagcagccca ggcagcggct gtgcaagccg
     1621 cagcagccca ggctgcagtt gcggcccagg cagccgccct ggaacaactc cgggagaagc
     1681 tggaatccac ggagcctccg gaaaagaaga tggccctggt tgcagatgag cagcagcgtc
     1741 tcatgcagcg agccgtgcag cagagcttcc tggccatgac agcccagctg cccatgaaca
     1801 tccggatcaa cagccaagcc tctgagagtc gccaggaccc agctgtaaat ctcaccagtg
     1861 ccaatggcag caacagtatt agcatgtccg tggagatgaa cggtattgta tacacagggg
     1921 tgctgttcgc tcagccacca cctcctacgc cacctcccgc ctccagcaaa ggtggtgtga
     1981 gcagcattgg taccaacaac accatgggta accggacagg agccagtggc agtgctggca
     2041 gcagcggcca agtggggctg gctggggtgt ctgcacccac catgtcttct acctcaaata
     2101 actccttgcc ttaaaaggaa accaagttgc atggctgccc acccgccaca ggaaccacat
     2161 ggccacacag ggggacctgg gacgtcagaa gaatcccagt gggctgggca gattcccaag
     2221 gagccacact gacgccaaaa aggagagaga gagatagaga gagaaagaga gagagagaaa
     2281 atatatatat atacatatat atatatacat atagaaagag ataggtagat ggagaaacag
     2341 atctaataaa tcagggcaaa gcaaaaaaaa aaaaaaaaaa aaaaaaa
//
