LOCUS       XM_039111320            4605 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor
            10 like (Arhgef10l), transcript variant X2, mRNA.
ACCESSION   XM_039111320
VERSION     XM_039111320.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4605
                     /gene="Arhgef10l"
                     /note="Rho guanine nucleotide exchange factor 10 like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 38 ESTs, 1 long SRA read, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:684811"
                     /db_xref="RGD:1585585"
     CDS             241..4083
                     /gene="Arhgef10l"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 10-like
                     protein isoform X1"
                     /protein_id="XP_038967248.1"
                     /db_xref="GeneID:684811"
                     /db_xref="RGD:1585585"
                     /translation="MASSNPPPQPAIGDPLAPRAPGPSPEVEEDSGEAFEFDDSDDEE
                     DTNTGLVVPGLAPERDTEPSLICFDTVPSSDLDPAAAPPQTEAPTVVSNGDAVGAALS
                     GVRHSSWKRKSSRRIDRFTFPALEEDVIYDDVPCESPDAHQPGAERSLLYEDVHRAGA
                     PREAEDLGWSSSEFESYSEDSGEETKPEAEPTKHRGSFQPKLSPDLTRLKERYVRTKR
                     DILALRVGGRDMQELKLKCDCKMTQLMKAAKSGTRDGLEKTRMAVMRKVSFLHRKDTL
                     GDSEEEDMGLLEVGVTDIKPPAPELGPMPEGLSPQQVVRRHILGSIVQSEGSYVESLK
                     RILQDYRNPLMEMEPKALSARKCQMVFFRVKEILHCHSMFQIALSSRVAEWDSTEKIG
                     DLFVASFSKSMVLDVYSDYVNNFTNAMTIIKKACLTKPAFLEFLKRRQVCSTDRVTLY
                     GLMVKPVQRFPQFILLLQDMLKNTPRGHPDRLSLQLALTELETLAEKLNEQKRLADQV
                     AEIQQLTKSVSDRSSLNKLLTSGQRQLLLCETLTETVYGDRGQLIKSKERRVFLLNDM
                     LVCANINFKPSNHRGQLEISSLVPLGPKYVVKWNTALPQVQVVEVGQDGGAYDKDNLL
                     IQHAGAKKATAAGQAQNKVYLGPPRLFQELQDLQKDLAVVEQITLLISTLHGTYQNLN
                     MTVAQDWCLALQRLMRVKEEEIHSANKCRLRLLLPGKPDKSGRPISFMVVFITPNPLS
                     KISWVNRLHLAKIGLREENQPGWLCPDEDKKSKAPFWCPILACCVPAFSSRALSLQLG
                     GLVHSPVNSPLLGFSAVSTSLPQGYLWVGGGQEGAGGQVEIFSLNRPSPRTVKSFPLS
                     APVLCIEYIPDPEEEAEGAEESRATTDPSVTVHPTVCLGLQDGSILLYGSVDTGTQCL
                     ATCKSPGPQPVLCLRHGPFYLLAGLQDGTLAAYPRTSGEIPWDLESPPVCLTVGPGPI
                     RTLLSLEDAAWASCGARVTVLDAATLQTQQSFEAHQDEAVSVTHMVKAGSGVWMAFSS
                     GSSIRLFHTETLEHLQEINIATRTTFLLPGQKHLCVTSLLICQGLLWVGTDQGVIVLL
                     PVPRLEGIPKITGKGMVSLNGHCGPVAFLAVAMSILAPDILRSDQEEAEGPQAEEDKP
                     DGQAHETVPAPDSHTARELTRKKGILLQYRLRSTAHLPGPLLSVREPAPADGSALEHS
                     EEDGSIYEMADDPDVWVRSRPCARDAHRKEICSVAIISGGQGYRHFGSAPGGLSGRPA
                     PCSETDSTLLIWQVPLAL"
ORIGIN      
        1 gcaggccgcg ggccggggct gcagaggggc gcggggctcg gcccggccac cggcgcccgc
       61 ggcgggagcg ggaggcgcgg tggcgcggtg gcgcggagcc tttgtgagca gcggggacga
      121 ggtcaagctg ggactgactg ctcaggctgg ggaacacaga aacacaggtg cccagggcag
      181 tgccgggccg agtggaaggc gagcatcgag acggtgatag actgagctag accctgtctg
      241 atggcttcct cgaaccctcc tccacagcct gccataggag atcccctggc tcccagagct
      301 ccaggcccct cccccgaggt ggaggaggac tccggagaag cctttgagtt tgatgacagt
      361 gacgatgagg aggacaccaa cactggcctg gttgtccctg gcctcgcccc tgagagggac
      421 acagagccct cactgatctg ctttgacact gtccccagct cagacctgga cccagcggct
      481 gcaccacccc agacagaggc acccactgtg gtcagcaatg gggatgcggt gggcgcggcg
      541 ctctctgggg tccggcattc cagctggaag cggaagagct cacgtcgcat tgaccggttc
      601 actttccctg ccctggagga agatgtgatt tatgacgacg tcccctgtga gagcccagac
      661 gcccatcagc ccggggcaga gcggagcctt ctttacgagg atgtgcatcg tgccggagca
      721 ccccgtgagg ctgaggacct aggctggagc tccagcgagt tcgagagcta cagcgaggac
      781 tctggggagg agaccaaacc agaggcagag cctactaagc accgagggtc cttccagccc
      841 aagctttctc cagacctgac taggctaaag gagagatacg tcaggactaa gagagacatc
      901 ttggctttga gagttggggg tagagacatg caggagctga agctcaagtg cgattgtaag
      961 atgacccagc tcatgaaggc cgccaagagc gggaccaggg atgggctgga gaagacccgg
     1021 atggctgtca tgcgaaaagt ctcctttctg cataggaaag ataccctagg tgactcggaa
     1081 gaagaagata tggggctcct ggaggttggt gtgacggaca tcaaacctcc cgcaccagag
     1141 ctgggtccca tgccggaggg cttgagtcct cagcaggtgg tccggagaca catcctgggc
     1201 tccatcgtgc agagtgaagg cagctacgtg gagtcgctga agcggatact ccaggattac
     1261 cgtaacccgc tgatggagat ggagcccaag gcgctgagcg cccgcaagtg tcagatggtt
     1321 ttcttccgag tgaaggagat tctacattgt cactccatgt tccaaatcgc cctgtcctcc
     1381 cgagtggctg aatgggactc cacagagaag attggtgacc tctttgtggc ctcattctcc
     1441 aagtccatgg tcttagacgt atacagcgac tatgtgaaca atttcaccaa cgccatgacc
     1501 atcatcaaga aggcctgcct caccaagcca gcgtttcttg agttcctcaa gcggcgacag
     1561 gtgtgcagta cggaccgagt caccctctac gggctgatgg tgaaacccgt tcagagattt
     1621 ccacagttca tcctcctgct tcaggacatg ctgaagaaca ctcccagggg ccaccctgac
     1681 aggctgtcgc tgcagctagc cctcacagag ctggagacgc tggctgagaa gctgaatgaa
     1741 cagaagcggc tggctgatca ggtggctgag atccagcagc tgaccaagag tgtcagtgac
     1801 cgcagcagcc tcaacaagct cttgacctct ggccagcggc aactgctcct gtgtgagact
     1861 ctgacagaga cggtgtatgg agaccgtggg cagctgatca agtccaagga gcgcagggtc
     1921 ttcctgctca atgacatgtt ggtctgtgcc aacatcaact tcaagccctc caaccacagg
     1981 ggccagctag agatcagcag cctggtgccc ctggggccca agtacgtggt gaagtggaac
     2041 acggctctgc ctcaggtgca ggtggtagag gtgggtcagg acggtggtgc ctacgacaag
     2101 gacaatctgc tcatccagca tgctggagcc aagaaagcca ccgctgcggg gcaggcccaa
     2161 aacaaggtgt acttgggccc cccacgcctc ttccaggagc tacaggacct gcagaaggac
     2221 ctagcggtgg tggagcagat caccctgctt atcagcacct tgcatggcac ataccagaat
     2281 ctgaacatga ccgtggccca agactggtgc ctggccctcc agaggctcat gcgagtgaag
     2341 gaggaggaga tccactcggc caacaagtgc cgtctgcggc tcctgctgcc cgggaagcct
     2401 gacaagtccg gccggcccat cagcttcatg gtggtcttca tcacaccaaa tcccctgagc
     2461 aaaatctcct gggtcaacag gttacacttg gcgaagatcg gactaaggga ggagaaccag
     2521 ccgggatggc tgtgtcctga tgaggacaag aaaagcaaag ccccattctg gtgccccatc
     2581 ctggcctgct gcgtccctgc cttttcctcc cgggccctca gcctgcagct tgggggcctg
     2641 gtccacagtc ctgtgaactc tcctctgctg ggcttctcgg ctgtcagcac ttcccttcca
     2701 cagggctacc tttgggttgg cggtgggcag gagggtgctg gtggccaggt ggagatcttc
     2761 tccctgaatc ggccttcgcc gcgcaccgtc aagtccttcc cactgtcagc ccctgtgctc
     2821 tgcatagagt atattcccga tccagaggag gaggctgagg gtgcagagga gagccgggcc
     2881 accactgatc cctcagtgac agtgcacccc actgtgtgcc tcggattaca ggatggcagc
     2941 atcctgctct atggcagtgt ggacactgga acccagtgcc tggccacctg caagagccca
     3001 ggcccgcagc ccgtgctctg cctgcgtcac ggtcccttct acctgcttgc cggcctgcag
     3061 gacggaaccc tcgctgccta tcctcggacc agtggagaaa ttccctggga cctggagagt
     3121 cctccagtgt gcctaactgt gggcccaggg cccattcgca ccctgctgag cctggaggat
     3181 gccgcgtggg ccagctgcgg ggcgagggtc acggtactgg atgccgccac tctgcagact
     3241 cagcaaagct tcgaggcgca ccaggatgag gcggtgagtg tcactcacat ggtgaaagct
     3301 ggcagtgggg tctggatggc cttctcctct gggtcttcta tccgcctctt ccacaccgag
     3361 actctggagc atcttcagga gatcaacatt gccaccagga ccaccttcct cctgccaggt
     3421 cagaagcacc tgtgtgtcac cagcctcctc atctgccagg gtctgctgtg ggtaggcact
     3481 gaccagggtg tcattgtcct gttgcctgtg ccccgactgg agggcatccc caagatcaca
     3541 gggaaaggca tggtgtctct caatggtcac tgtggacctg tggccttcct ggctgtggcc
     3601 atgagcatct tggcccctga catcctgcgg agtgaccagg aagaggccga gggaccgcag
     3661 gccgaggagg acaagccaga cgggcaggct catgaaaccg tgcctgcgcc tgacagccac
     3721 acagctcgag agttgacccg caagaaaggc atcctgctcc aataccgcct gcgctccacg
     3781 gcccacctcc ctggacccct gctgtctgtg cgggagccag cacctgctga tggctcggct
     3841 ctggaacaca gtgaggagga cgggtccatc tacgagatgg ccgatgaccc tgacgtctgg
     3901 gtccggagcc ggccctgtgc ccgtgatgcc caccgcaagg agatctgctc tgtggccatc
     3961 atctctggtg gacaaggcta ccgtcacttt ggcagtgctc caggtggcct gagtggccgg
     4021 ccggccccct gcagtgagac agacagcaca cttcttatct ggcaggtgcc cttggctcta
     4081 tagctatcca cgctgcccat ccggaggtta cagggcagct ggaccactgc ggacacgctg
     4141 ggaccctttt ggcccacctg gatttccctc agggacctgc ccaggccaca gggcagggca
     4201 ggccggattc tccaccgagg ccttggaaaa gcagaggaga gaaacctctg aaaacaaaaa
     4261 tttagaatgt tttggggaag gggtttttag agtcttgggg aacggaagga cgcacacaga
     4321 gaatatgacc ttttttgttt tgttctgttt ctgaagcaaa aaaacataaa acctcaccac
     4381 tgcctgctga acctagaact gtttgttggg gttgagtgag gctctgaggt ggccgggccc
     4441 cttcaggagg agtgtatgtg tgaatggctg agtgtgtgac tatatatata tatatatcta
     4501 tatatatata aatacgtata tacgatgtat attatatgta tataaatatg atctgtacat
     4561 aatgggtctc tgggagatgc tggaataaaa ggcaagagat atgtg
//
