LOCUS       NM_001080789            2496 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Rho GTPase activating protein 9 (Arhgap9),
            transcript variant 1, mRNA.
ACCESSION   NM_001080789 XM_001056068 XM_576241
VERSION     NM_001080789.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ceccarelli,D.F., Blasutig,I.M., Goudreault,M., Li,Z., Ruston,J.,
            Pawson,T. and Sicheri,F.
  TITLE     Non-canonical interaction of phosphoinositides with pleckstrin
            homology domains of Tiam1 and ArhGAP9
  JOURNAL   J Biol Chem 282 (18), 13864-13874 (2007)
   PUBMED   17339315
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Furukawa,Y., Kawasoe,T., Daigo,Y., Nishiwaki,T., Ishiguro,H.,
            Takahashi,M., Kitayama,J. and Nakamura,Y.
  TITLE     Isolation of a novel human gene, ARHGAP9, encoding a rho-GTPase
            activating protein
  JOURNAL   Biochem Biophys Res Commun 284 (3), 643-649 (2001)
   PUBMED   11396949
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Dec 16, 2022 this sequence version replaced NM_001080789.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107938.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-558               JAXUCZ010000007.1  65034144-65034701
            559-773             JAXUCZ010000007.1  65034938-65035152
            774-854             JAXUCZ010000007.1  65037410-65037490
            855-917             JAXUCZ010000007.1  65037620-65037682
            918-976             JAXUCZ010000007.1  65037894-65037952
            977-1070            JAXUCZ010000007.1  65038092-65038185
            1071-1166           JAXUCZ010000007.1  65038372-65038467
            1167-1265           JAXUCZ010000007.1  65038593-65038691
            1266-1407           JAXUCZ010000007.1  65038921-65039062
            1408-1518           JAXUCZ010000007.1  65039145-65039255
            1519-1617           JAXUCZ010000007.1  65039780-65039878
            1618-1695           JAXUCZ010000007.1  65040027-65040104
            1696-1749           JAXUCZ010000007.1  65040234-65040287
            1750-1884           JAXUCZ010000007.1  65040521-65040655
            1885-2022           JAXUCZ010000007.1  65041232-65041369
            2023-2496           JAXUCZ010000007.1  65041863-65042336
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..2496
                     /gene="Arhgap9"
                     /note="Rho GTPase activating protein 9"
                     /db_xref="GeneID:362893"
                     /db_xref="RGD:1305342"
     exon            1..558
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..2027
                     /gene="Arhgap9"
                     /note="isoform 1 is encoded by transcript variant 1; rho
                     GTPase-activating protein 9"
                     /codon_start=1
                     /product="rho GTPase-activating protein 9 isoform 1"
                     /protein_id="NP_001074258.1"
                     /db_xref="GeneID:362893"
                     /db_xref="RGD:1305342"
                     /translation="MFSGQWWPSIWKNLGLSLQSPSQGPELCALYPFAYTGADGRQVS
                     LAEGDRFLLLRKTNSDWWLARRLGAPPSSRPIFVPAAYVTEESVSCHNPAGSTHNSSL
                     WTPGTKLYRGSLEDLYLSQEHQVVSGQPPHCSHKMCRSVSMANVKLCSLKPFKEGPQE
                     RFLSQDCWRTEASAAAVKSGSMEHTEALIRDSNPLQHQEWLNAQDLPSLSQSIPWPDV
                     SEQPCPHEERSGLLNMTKIAQGGRKLRKSWGPAWVVLTGNSLVFYRERPPQCAPSQGW
                     APAGSRPESSVDLRGAALASGRQLSSRRNVLHIRTVPGHEFLLQSDEETELRAWHRAL
                     RAVIERLDRENPLELRLSGSGPAELAELSGGEDDELESEPVSKSLMRLGSRRTSSRCA
                     EGTDQKNRVRNKLKRLIAKRPTLQSLQERGLFRDQVFGCQLESLCQREGDTVPSFVRL
                     CVEAVDKKGLDVDGIYRVSGNLAVVQKLRFLVDRERAVTSDGRYMFPEQPGQEGKLDL
                     DSAEWDDIHVITGALKLFFRELPQPLVPALLLPHFRDALELSEPEHCLSKIQKLIDSL
                     PRPNHDTLQYILEHLCRSGRLSNLVRAE"
     exon            559..773
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            774..854
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            855..917
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            918..976
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1070
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1071..1166
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1265
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1407
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1518
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1617
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1618..1695
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1696..1749
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1884
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2022
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
     exon            2023..2496
                     /gene="Arhgap9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacagaagt cctgggcccc caaacctgtg ctgatctctc ccacccttct tctcactcca
       61 agggtcctgc acacacacac acacacacac acacacacac acacacacac tcactcacac
      121 agtgctctta acacacaaaa gctcactctt agagccatgt ccctctatac ggagtcactc
      181 actcctattt gcttctggaa cttcagcacc cccttttcct ataggtgaca gtgccaacca
      241 ccatgttctc aggccagtgg tggccaagta tttggaaaaa tctaggactg agtctacaaa
      301 gcccttctca ggggccggag ctctgtgccc tttatccctt tgcttataca ggggcagatg
      361 gccggcaggt gtctctggcc gaaggtgaca ggttcctact gcttcgaaag accaactcag
      421 actggtggtt ggcaaggcgc ctgggagcgc cccccagctc tcggcccatc tttgttccag
      481 ctgcatatgt gacagaggaa tcagtctcct gccacaaccc agcaggcagt acccacaaca
      541 gttccctctg gactcctgga acaaagctgt accgtggctc cctggaagat ctctacttat
      601 ctcaggaaca ccaggttgtt tctgggcagc ctcctcactg ttcccacaaa atgtgcagaa
      661 gtgtcagcat ggccaatgtg aagctctgct ctctgaaacc cttcaaggaa gggccccaag
      721 aaaggtttct ctctcaggac tgttggagga cagaagccag tgctgctgct gtgaaatctg
      781 gctccatgga gcacacagag gctttgatca gggacagtaa tcctctgcaa catcaggaat
      841 ggctgaatgc acaggattta ccaagcctca gccaaagcat cccgtggcct gatgtctcgg
      901 agcaaccctg tccacacgag gaaaggtcag gcctgctcaa catgaccaag attgctcaag
      961 gagggcgcaa actcaggaag agctggggcc ctgcttgggt agtgttaact ggtaacagcc
     1021 ttgtgttcta ccgagagcgg ccaccgcagt gtgcaccctc ccaaggctgg gcgccggctg
     1081 gaagcagacc agaaagtagc gtggacctgc gcggggcggc cctggccagc gggcgccagc
     1141 tgtccagccg ccggaacgtc ctgcacatcc gcacggtccc agggcatgag ttcctgctgc
     1201 agtcggatga ggagacggag ctgagagcat ggcaccgcgc gctgcgggcg gtcatcgagc
     1261 ggctggatcg ggagaacccc ctggagctgc gtctgtctgg ctccggaccc gctgagctgg
     1321 cagagttgag tggtggtgag gatgacgaat tggagtcgga accggtgtcc aagtccctga
     1381 tgaggcttgg cagccgcaga acttccagtc ggtgtgcaga gggcactgac cagaagaacc
     1441 gcgtgcggaa caagttaaag cggctaatcg caaagagacc aactttacag agccttcagg
     1501 agcggggtct gttccgagac caagtttttg gctgccagtt ggagtcgctg tgccaacggg
     1561 aaggggatac cgtgcccagc tttgtccggc tttgtgttga ggctgtggat aaaaaaggtc
     1621 tagatgtgga tggcatttac cgggtgagtg ggaacctggc agtggtccag aaactccgct
     1681 tcctggtaga cagagaacgg gcagtgacct ccgatgggag atacatgttc ccagaacagc
     1741 caggacaaga aggcaaatta gatttagaca gtgctgaatg ggatgatatt cacgtgatca
     1801 ctggagcttt gaaacttttt ttccgggagc tgccacagcc tctggtgcct gcgttgttgc
     1861 tgcctcattt tcgggatgcc cttgaacttt ctgagccaga gcactgcctc tctaaaatac
     1921 agaaattaat agactcgttg ccgaggccca accatgacac tctgcagtac atcctggaac
     1981 atctgtgcag gtcagggaga ctcagcaacc ttgttcgtgc tgagtgatcg cacactcgga
     2041 taagaaccga atgactgccc acaacctggg aattgtgttt ggaccgacgc tgtttcgacc
     2101 tgagcaggag gcttccgaca tggcggccca cgtggtctac cctgggcagc tgatccagct
     2161 gatgctcaac aactttgcta gcctcttcac ctgactctgg aaaggaggga ggaaggcact
     2221 acctgtgatt tgtcagctag cctttggagg ggactcacag gttttctgta aatgtcctcc
     2281 caaaggactc tccatttccc accgcccgag tctcacttga gctcttggct gagaggggtt
     2341 gccgaagagg aaggcgtcgg agcttacttc cgctctcccc gacgtgacgc acgacgcttg
     2401 ttctcagcgt tcctttattg tcaggaaact gtgtcatcat taaagttttt ttttcccctg
     2461 gaacatacat agactaaata cagcccccaa cccaaa
//
