LOCUS       NM_001398688            2411 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Rho GTPase activating protein 40 (Arhgap40),
            mRNA.
ACCESSION   NM_001398688
VERSION     NM_001398688.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2411)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.16948.1,
                                           SRR26643295.16219.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               JAXUCZ010000003.1  167585665-167585841
            178-374             JAXUCZ010000003.1  167601756-167601952
            375-592             JAXUCZ010000003.1  167606119-167606336
            593-668             JAXUCZ010000003.1  167606852-167606927
            669-814             JAXUCZ010000003.1  167607439-167607584
            815-980             JAXUCZ010000003.1  167610049-167610214
            981-1072            JAXUCZ010000003.1  167614687-167614778
            1073-1150           JAXUCZ010000003.1  167615307-167615384
            1151-1310           JAXUCZ010000003.1  167615743-167615902
            1311-1393           JAXUCZ010000003.1  167617629-167617711
            1394-1597           JAXUCZ010000003.1  167618843-167619046
            1598-1738           JAXUCZ010000003.1  167622048-167622188
            1739-1914           JAXUCZ010000003.1  167623183-167623358
            1915-1970           JAXUCZ010000003.1  167625029-167625084
            1971-2411           JAXUCZ010000003.1  167625993-167626433
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2411
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /note="Rho GTPase activating protein 40"
                     /db_xref="GeneID:296323"
                     /db_xref="RGD:1562428"
     exon            1..177
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..2062
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /codon_start=1
                     /product="rho GTPase-activating protein 40"
                     /protein_id="NP_001385617.1"
                     /db_xref="GeneID:296323"
                     /db_xref="RGD:1562428"
                     /translation="MTEPSLLPAAQMEGLALLPLASPCPRIPRARISRQPGRWAHLGC
                     SPGPSTGPTNLPRYPLKPRPADCAYSRLSWAESLSMDGFWPGVERIQQRGERKKEDCG
                     GSRSQLLEGDAESQWLQDTGLAGLVGGLGLDDDHQGLLSTLTQTQVAAVCRRLDIYAR
                     SARRRQKAPVRDVRDIFGVFTSREAAPENGDSGMKWTEFNSEDSASPLRPAGGPQEPA
                     GMEEVFNMESAYSEQAAVLLQRTWSSPEGARAWGKGCLPRFRIPKGRLGVTRIGDLSS
                     RDMKKILPLALIELTALYDILGLDLKRSKGRKWKGADSGLFGVPLHSLLEADHRVFPS
                     TQVPLLLQALLSCLEKRGLDTEGILRVPGSQARVKGLEQKLERDFYAGLVSWDKVHPN
                     DASDLLKRFLRKLPAPLLTAEYLPAFAAVPNIPDLKQRLQALHLLVLLLPEPNRNTLK
                     ALLEFLRKVAAQEQHNKMTLWNVSTVMAPNLFLPRGRPPKLAQGEKQLAEGAAEVVCM
                     MVQYQDLLWTVASFLVAQVRKLNDSNCRRSQLCDGGLKTWLRRTHVDRDKARNGLEAT
                     PKVATIQVPATGPSMDLLQVPLSPSTRVTHVLKLFTEHLNPGSQPEEGSETSNSLLSD
                     NTKKKPATFLVYEVGGNIGEHRLDPDAYLLDLYRANPHGEWVIRQSPT"
     exon            178..374
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            375..592
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            593..668
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            669..814
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            815..980
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1072
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1150
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1151..1310
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1393
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1597
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..1738
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1914
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1915..1970
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2411
                     /gene="Arhgap40"
                     /gene_synonym="RGD1562428"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attctgtccc agaggtagca ttagtagctg tgtgtgcctg tccatgacag agccgtccct
       61 tctccctgct gcccagatgg aggggctggc tctgctgccc ctggcctcac cctgtccccg
      121 gatcccacga gcccgcatct ccaggcaacc agggcgatgg gcccacctgg gctgcagccc
      181 tggcccttct acaggcccca caaatctgcc acggtatcct ctgaagccac gccctgctga
      241 ctgtgcctac tccaggctgt cctgggcaga gagcttgtct atggacggct tctggccggg
      301 ggtggaacgg atccaacaga ggggtgaaag gaagaaggaa gactgtggtg gaagcagaag
      361 ccagctccta gaaggggacg ctgaatccca gtggctacag gacacaggcc tggcaggcct
      421 tgttggtggt ctgggcttgg atgatgatca ccaggggctc ctgtctacac tgacacagac
      481 ccaggtggct gctgtgtgcc gccggctaga catctatgcc cgctcagccc gaaggcgaca
      541 gaaggcaccc gtcagagacg tcagggatat cttcggggtc ttcacatcaa gggaagccgc
      601 tccagagaat ggggactcag gaatgaaatg gaccgagttc aattctgagg attctgcatc
      661 tcccctgaga cctgctgggg gaccacagga gccggctggg atggaggagg tcttcaacat
      721 ggagtctgct tactctgaac aggctgcagt gcttctacag aggacctggt catcgccaga
      781 aggcgcccgt gcctggggca agggatgcct gccgaggttc agaattccca aaggcagact
      841 gggtgtgacc aggataggag acttgtcttc gagggacatg aagaagatcc ttcccttggc
      901 cctgatagag ctgacagcac tctatgacat cctaggcctg gacctgaaga gaagcaaagg
      961 caggaagtgg aaaggcgcag actccggcct ttttggggtg ccccttcaca gccttctgga
     1021 agctgaccac agagtcttcc ccagcaccca ggtcccactg ctcctgcaag ctttgctgtc
     1081 ctgtttggaa aaaagagggc tggacacaga aggcatcctc agagtgcctg gatcccaggc
     1141 cagggtcaag gggctggagc agaagctgga gcgagacttc tatgctggcc tcgttagctg
     1201 ggacaaggtt catcccaatg atgcatctga cttgctcaag aggttcctcc ggaagctgcc
     1261 tgcacctctg ctcacagccg aatacctccc agcctttgca gcagtgccca acatccctga
     1321 cctgaaacag cgcctacagg ctctccacct gcttgtcctc ctcctgccgg aacccaaccg
     1381 caacaccttg aaggcactcc tggaattcct caggaaggtg gcagcccagg agcagcacaa
     1441 caagatgacc ttgtggaatg tttccacagt gatggccccc aatctcttcc tgccccgagg
     1501 gcggcctccc aagctcgccc agggtgagaa gcagctggca gagggtgcag ctgaagtggt
     1561 gtgcatgatg gtgcagtacc aggacctgct ttggacggtc gcctctttct tggtagctca
     1621 agtgcgaaaa ctgaatgaca gtaattgccg tcgttcccag ctctgtgatg ggggcctcaa
     1681 gacttggctg cggaggacac acgtagacag agacaaggct aggaacgggc ttgaagcgac
     1741 tcccaaagtg gcaacaatcc aggtcccagc gaccgggcct agcatggatc ttctgcaggt
     1801 gcctctgagt cctagcacca gggtgaccca tgtccttaag ctgttcacag agcacctcaa
     1861 ccctggctca cagcctgaag agggcagtga gacctcaaac agccttctct cagataacac
     1921 gaagaagaag ccggccacct tccttgttta tgaagttggg gggaatattg gtgaacatcg
     1981 cctggaccca gatgcctacc tcttggattt ataccgtgcc aacccccatg gcgaatgggt
     2041 cattagacag agccccacct aagaaacagc ctgggagcag agctgttcac atggaaagac
     2101 cagttctttc aaagtccccc ttccaggaaa tacctcttct atggccaaca gcacagagcc
     2161 ggcctgccct tcgccacata cggagagccc tggaggatac cacacgggta cctgcatctc
     2221 tacaggggtt tgtccacaat ttccagacac aaggggagta aaaactgtgg caactctctg
     2281 gaacaggcag aagtttccag aaaatattgc tctggaggca tccccacagt gtggagtggg
     2341 aaaccccgtg tcttctctga gaccctaaag atgccacgga cagccctagg atagctgcac
     2401 aggtgacgga c
//
