LOCUS       XM_039099456            3032 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Rho GTPase activating protein 4
            (Arhgap4), transcript variant X8, mRNA.
ACCESSION   XM_039099456
VERSION     XM_039099456.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099456.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3032
                     /gene="Arhgap4"
                     /note="Rho GTPase activating protein 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 22 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:246249"
                     /db_xref="RGD:628901"
     CDS             152..2833
                     /gene="Arhgap4"
                     /codon_start=1
                     /product="rho GTPase-activating protein 4 isoform X8"
                     /protein_id="XP_038955384.1"
                     /db_xref="GeneID:246249"
                     /db_xref="RGD:628901"
                     /translation="MAAHGKLRRERGLQPEYEAQVKVMRGQLSEQLHCLELQGELRRD
                     LLLELAEFMRRRAEVELEYSRGLDKLAERFTSRSGRLGGSSREQQSFRKEPTLLSPLH
                     CWAMLLEHTRQQSRESATLSEVLAGPLAQRLSHIAEDVGRIVKKSKDLVQQLQDELLE
                     VVSELQTQGYLAWASLQTKKTYHVYHLESMNAETKLREAERQEEKRSGKSALPTTTAA
                     SATTTITIETELHRKGSLKKGGRLVEKRQAKFLEHKLKCTKARNEYLLSLASVNAAVS
                     NYYLHDILDLMDCCDTGFHLALEQALRSYTAAESRTQTSHMQGLGSLEEALEALDPPG
                     DKAKVLEVHAMAFCPPLRFDYQPHEGDEVAEIQVEMELRDEILPRAQNIQSRLDQKTI
                     ETEEVNKTLKATLQALLEVVASEDGDILDSLQASPSTESLKSTSSDPGTRQAGRRRNQ
                     QQETETFYITKLQEYLSGRSILAKLQAKHEKLQEAIQRGNKEEQETSSWTQCTERKFH
                     KSHHPYPGSQCTQRLFGGDLEKFIQSTGQPVPLVVKSCIRFINLNGLQHEGIFRVSGA
                     QARILEIRDAFERGEDPLVEGCTAHDLDSVAGVLKLYFRSLEPPLFPLDMFNELLASA
                     ELEVVGERVELVSHLLSRLPRPVLVVLRYLFTFLNQDGQLESLAGEPELELKTGTKAQ
                     EDDPLFPIDSEGVVEAVACFAYTGRTAQELTFQQGDTLRLYARASSDWWRGEHAGVRG
                     LIPHKYITLSEGDEKQMTGSGLQAMGESLSHPESVLTLEFTNRLELGTPPEALGPSGH
                     RRHCLVPTSPEQHVEMDKAVAQNMDSVFKELLGKAAVRQGHGLASTASPSLGTRNLKP
                     LACSSFSKNKVFSRGPGAPVSPSVSHPQGPDSTRKPV"
ORIGIN      
        1 tagggacctg ctgagggcgg ggctggcagg gctggcaagg cggagcccgt ggagggtgct
       61 ggctttagca cccctggtcc ctgctctcgg cggtctcgcc tcgctgcttc cgcgtggaag
      121 cgttgggact tggtgcaatc gcccctcagc catggcggcg cacgggaagt tgcggcggga
      181 gcggggactg caacccgagt atgaggcaca ggtcaaagtg atgcgcgggc agttgagtga
      241 gcagcttcat tgcctggagc ttcagggaga gctgcggcgg gatttgctgc tggagctagc
      301 tgagttcatg cggcgtcgag cagaggtgga gctggagtat tctcggggcc tggacaagtt
      361 ggctgaacgc tttactagcc gcagtggacg ccttggaggc agcagccggg agcagcaaag
      421 tttccggaag gagccaactc tcctgtcacc cttgcactgc tgggctatgc tgctggaaca
      481 tactcggcag cagagtcggg aaagtgctac cctcagtgag gtgctggctg gacctctggc
      541 acagcgcctg agtcacattg ccgaggatgt aggacgcatt gtcaaaaaga gtaaggacct
      601 ggtgcagcaa ctgcaggatg agctcctgga ggtggtctca gaactccaga cacagggcta
      661 ccttgcctgg gcctccctgc agaccaagaa gacgtaccat gtataccact tggagagcat
      721 gaatgctgag actaaacttc gggaagctga gaggcaagag gagaagcggt caggcaagag
      781 tgccttgccc accactactg ctgcctctgc caccaccacc atcaccattg agacagagct
      841 ccaccgaaag ggctctctca agaaaggagg gcggctagtg gagaagcgtc aggccaagtt
      901 cttggaacat aaacttaaat gcaccaaggc ccgaaatgag tacctgctca gcctggccag
      961 tgtcaatgct gctgtcagca actactactt acacgatatc ttggacctca tggattgctg
     1021 tgacacaggt ttccacttgg ccctggagca ggccctccga agctacacag ccgctgaaag
     1081 ccgcacccaa acctctcaca tgcagggttt aggcagtctg gaagaggctc tagaggcctt
     1141 ggatcctcca ggggacaaag ccaaagtgct tgaggttcat gccatggcct tctgtccccc
     1201 tctacgtttt gactaccagc cccatgaagg tgatgaggtg gctgagatcc aggttgagat
     1261 ggaacttcgg gatgagattt tgcccagagc ccaaaacatc caaagtcgcc tggaccaaaa
     1321 gaccattgag acagaagagg tgaataagac actgaaggca acacttcagg ctctgctaga
     1381 ggtggtggca tcagaggatg gagatatact ggactctttg caggccagcc cctccactga
     1441 gtccctcaag tctacaagct cagacccagg cacccgacag gcaggccgca gacggaacca
     1501 gcagcaggag acagaaacct tctatattac gaagctgcag gaatatctga gtggccggag
     1561 catccttgcc aagctgcagg ccaagcatga aaagctccag gaagccatac aacgaggtaa
     1621 caaggaagag caagagacat cttcttggac ccaatgcaca gagagaaaat tccataagag
     1681 ccaccacccc tatcctggat cccagtgtac ccagagactt tttggaggtg atctagagaa
     1741 gtttatccag agcacaggcc aacctgtgcc ccttgtggtg aagagctgta tccgcttcat
     1801 taacctcaat ggcctgcaac atgaaggcat cttccgggta tcaggtgccc aggcccggat
     1861 attggagatc cgagatgcct ttgaaagagg ggaggaccct ctggtggaag gctgtactgc
     1921 ccatgaccta gactcagtgg ctggggtact aaagctgtac ttccggagcc tggagccccc
     1981 actgttcccc ttggacatgt ttaatgagct gctggcttca gcagaactgg aagttgtggg
     2041 tgagcgggta gagcttgtga gccatctact atccagacta cccagacctg tgctagtggt
     2101 cttgcgatat ctcttcacct tcctcaacca ggatggccag ttggagagcc ttgctgggga
     2161 gccagagctg gaattgaaaa ctgggaccaa agctcaggaa gatgaccctc tcttccccat
     2221 agactccgag ggagttgtgg aggctgtggc ctgctttgct tacactggcc gcacggccca
     2281 ggagctgaca ttccagcaag gggatacgct gagattgtat gctcgggcat caagtgactg
     2341 gtggcgaggg gagcatgctg gtgtgcgggg gctcattccc cataagtaca tcacactgtc
     2401 tgagggggat gagaagcaga tgactggttc aggattacag gccatggggg aatctctgag
     2461 ccatccagaa agcgtcctga ccttggagtt taccaaccga ctggaactag gcaccccacc
     2521 tgaggctttg ggcccctctg gtcacagacg acactgtttg gtccctacct cccctgagca
     2581 acatgtggaa atggataagg ctgtggcgca gaacatggat tctgtgttta aggagctctt
     2641 gggaaaggct gctgtccgcc agggccatgg gctagcatct acagcctccc ccagtctagg
     2701 aactcgaaac ctgaagcccc tggcctgcag cagcttcagc aaaaacaaag tcttctcccg
     2761 gggacctggg gctccagttt ccccctcagt ttcccatccc cagggtccag attcaactcg
     2821 caagccagtc tgaggcagct cacctccaac agacaccagc aagcccacca ttacaccaag
     2881 cctcacccca gccctgctct aggtctcttg ggaggtagca aaggaaggag gctggagaga
     2941 agcccttctt gtgcctttgc ttggaagctt tgggctgtag ctgtggaagg tggaagcaac
     3001 agtaattcat aaagacccat gtactgttgt aa
//
