LOCUS       NM_001009405            4076 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Rho GTPase activating protein 29 (Arhgap29),
            mRNA.
ACCESSION   NM_001009405 XM_227651
VERSION     NM_001009405.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4076)
  AUTHORS   de Kreuk,B.J., Gingras,A.R., Knight,J.D., Liu,J.J., Gingras,A.C.
            and Ginsberg,M.H.
  TITLE     Heart of glass anchors Rasip1 at endothelial cell-cell junctions to
            support vascular integrity
  JOURNAL   Elife 5, e11394 (2016)
   PUBMED   26780829
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4076)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4076)
  AUTHORS   Ahmed,S.M., Theriault,B.L., Uppalapati,M., Chiu,C.W., Gallie,B.L.,
            Sidhu,S.S. and Angers,S.
  TITLE     KIF14 negatively regulates Rap1a-Radil signaling during breast
            cancer progression
  JOURNAL   J Cell Biol 199 (6), 951-967 (2012)
   PUBMED   23209302
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087167.1.
            
            On Jan 7, 2005 this sequence version replaced XM_227651.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087167.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132293, SAMD00132294
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..4076
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /note="Rho GTPase activating protein 29"
                     /db_xref="GeneID:310833"
                     /db_xref="RGD:1306185"
     exon            1..90
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            91..327
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            328..410
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            411..545
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     CDS             473..4021
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /note="rho-type GTPase-activating protein 29;
                     PTPL1-associated RhoGAP 1"
                     /codon_start=1
                     /product="rho GTPase-activating protein 29"
                     /protein_id="NP_001009405.1"
                     /db_xref="GeneID:310833"
                     /db_xref="RGD:1306185"
                     /translation="MSKHQNLNSVDLQNAAETLASKVKAVNFTEVNDENKNDLFREVF
                     SSIETLAFTFGNILTNFLMGDVGNDSILRLPISRESKSFENISMDSVDLPHEKGNFSP
                     IELDNLLLKNSDSIELALSYAKTWSKYTKNIVSWVEKKLNLELESTRNIVKLAEATRS
                     SIGIQEFMPLQSLFTNALLNDIHSSHLLQQTIAALQANKFVQPLLGRKNEMEKQRKEI
                     KELWKQQQNKLLETETALKKAKLLCMQRQDEYEKAKSSMFRAEEEQLSSSVGLGKNLN
                     KLLEKRRRLEEEALQKVEEANEHYKVCVTNVEERRNDLENTKREILTQLRTLVFQCDL
                     TLKAVTVNLFHMQQLQAASLANSLQSLCDSAKLYDPGQEYSEFVKATSSSELEEKVDG
                     NVNKQIASSPQTSGYEPADSLEDVARLPDSCHKLEEDRCSNSADMTGPSFIRSWKFGM
                     FSDSESTGGSSESRSLDSESISPGDFHRKLPRTPSSGTMSSADDLDEREPPSPSEAGP
                     NSLGTFKKTLMSKAALTHKFRKLRSPTKCRDCEGIVMFPGVECEECLLVCHRKCLENL
                     VIVCGHQKLQGKMHIFGAEFIQVAKKEPDGIPFVLKICASEIESRALCLQGIYRVCGN
                     KIKTEKLCQALENGMHLVDISEFSSHDICDVLKLYLRQLPEPFILFRLYKEFIDLAKE
                     IQHVNEEQEAKKDSPEDKKHPHVSIEINRILLRSKDLLRQLPASNFNSLHYLIVHLKR
                     VVDHAEENKMNSKNLGVIFGPTLIRPRPTTAPVTISSLAEYSSQARVVEFLITYAQKI
                     FDGSLQPQAGVIANTGAIAPQVDHGCHPKPLLSPDERDSDHSLKQLFFSSKEDIRTMD
                     CESKTFELTTSFEESERKQNALGKCDAPILDNKVHLLFDQELESASHKTEDTCKSPKL
                     LLLRSDRVANSVQRPTPRTRLRPVSLPVDRLLLLAGSPTERSSRNTGNTDSDKFGKNA
                     AFEGLHRKDNSNTTCSKVNGFDQQNVQKSWDKQNERNSFTAKTTVIIPSAYAEKGLAV
                     STGNNRGHSSGAAQPSKAHADPARSARDTSEHSSSDSCPVAAVRAPRTLQPQHWTTFY
                     KPPNPTFNVRGTEEKTAFPSAAVPPVLVHAPQSHVAKSDPDLEATLACPVQTSGQPKE
                     SSEEPGLPEGTPTCQRPRLKRMQQFEDLEDEIPQFV"
     exon            546..642
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            643..715
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            716..764
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            765..902
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            903..967
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1078
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1159
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1160..1348
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1486
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1487..1647
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1787
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..1892
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1893..1991
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            1992..2131
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            2132..2320
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2458
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            2459..2691
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            2692..3022
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            3023..3131
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
     exon            3132..4051
                     /gene="Arhgap29"
                     /gene_synonym="B130017i01rik; RGD1306185"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgtggggga tggggacagc gagctccagc ccgctgaggg ggcggtggcc gtgagtgata
       61 ggcgtccggg tcgcgggatg gagccccacg gatttcagtt tttctgactg ttaaatgaga
      121 ggatgattgc tcacaaacag aaaaaggcaa agaaaaaacg tgtttgggca tcaggccaac
      181 tctctgccgc tattacaact tctgaaatgg ggctcaagtc cgtaagttcc aactccattt
      241 ttgatccgga atacatcaag gagctggtga atgatatcag gaagttctcc catgtgttac
      301 tatatttgaa agaagctatt ctttcaggtg ttgtagctgg ctcttgattt acaaataaat
      361 gaactcctta aagagagaga tctgaggcct gaatccatac tctgcctcgg actgttttaa
      421 agaagtcatt catatccgtc tggatgaact tcttcatgtt ttaaagtctg taatgagtaa
      481 gcatcagaac ctcaattctg tagaccttca gaacgctgca gaaacgctcg cttcgaaagt
      541 gaaagctgtg aactttacag aagttaatga cgaaaacaaa aacgatctat ttcgagaagt
      601 cttttcctcc attgaaactc tggcatttac ctttggaaac atcctcacaa acttccttat
      661 gggagatgta ggcaatgatt cgatactacg actgcctatt tctcgagaga gtaagtcctt
      721 tgaaaacatt tctatggact cagtggactt acctcatgaa aaaggaaact tttctcctat
      781 agaactagac aacttgctgt taaagaactc tgactctata gaactggctt tgtcttatgc
      841 taaaacttgg tcaaaatata ccaagaacat agtgtcctgg gttgaaaaaa agctcaactt
      901 ggaattggag tccactagaa atattgtaaa attggcagag gcaactagat ctagcattgg
      961 aatacaggag tttatgcctt tgcagtctct ctttaccaac gctctcctta atgatataca
     1021 cagcagtcac cttttacaac agacaatcgc agctctccaa gccaacaaat tcgtgcagcc
     1081 tctacttggg aggaagaatg aaatggagaa acaaaggaaa gaaataaaag aactttggaa
     1141 gcagcagcag aataaattgc ttgaaacaga gacggctctt aaaaaggcaa aactgttatg
     1201 catgcaacgg caagatgaat acgaaaaggc aaaatcatcc atgtttcgag cagaagaaga
     1261 gcagctgagt tcaagtgttg gactgggaaa aaatctcaac aaactactag aaaaaaggcg
     1321 gagattggaa gaagaggcgc ttcaaaaagt agaagaagca aatgagcact acaaagtctg
     1381 tgtaacaaat gttgaagaaa gacggaatga tctagaaaat acgaagcgag aaattttaac
     1441 acagctccgg acacttgttt tccagtgtga ccttacactt aaagctgtaa cagttaacct
     1501 ctttcatatg cagcagcttc aggctgcttc cctcgccaac agtttacagt ccctctgtga
     1561 cagtgccaaa ctctatgatc caggtcagga gtatagtgaa ttcgtgaagg ctacaagctc
     1621 aagtgaatta gaagaaaagg ttgacgggaa tgtaaacaaa caaatagcca gcagtccgca
     1681 gacatctgga tatgaacctg ctgactcttt agaggatgtt gcacgcctcc ctgacagctg
     1741 tcacaaactt gaagaggaca ggtgttccaa cagtgcagac atgacaggtc cttctttcat
     1801 aagatcgtgg aagttcggga tgtttagtga ctctgagagt actggaggaa gcagtgagtc
     1861 tagatctctg gattcagaat ctataagtcc aggagacttt catcggaaac ttccacgaac
     1921 tccatccagt ggaaccatgt cttctgctga tgatctagat gaacgagagc caccatcacc
     1981 ttcagaagct ggacccaatt ccctcggaac atttaagaaa actttgatgt cgaaggcagc
     2041 tctcactcac aagtttcgca agttgagatc ccccacaaag tgcagggatt gtgaaggcat
     2101 cgtaatgttc ccgggcgtcg agtgtgaaga gtgtctcctt gtttgtcacc gaaagtgttt
     2161 ggagaattta gtcattgttt gtggtcatca aaaacttcag gggaaaatgc acatatttgg
     2221 agcagaattc atacaagttg caaaaaagga accagatggc atccctttcg tgctaaaaat
     2281 atgcgcctca gaaattgaaa gtagagcctt gtgtctccag ggaatttatc gtgtttgtgg
     2341 aaacaaaata aaaactgaaa aactgtgcca agctttggaa aatggaatgc acttagtaga
     2401 catttcagaa ttcagttcac atgacatctg tgatgtcttg aaattatacc tgcgacagct
     2461 tccagaacca tttattttat tcagattgta caaggaattt atagaccttg caaaagagat
     2521 acaacatgta aatgaagaac aagaggcaaa aaaagatagc cccgaagaca aaaagcaccc
     2581 acacgtgagc atagaaatca accgcatcct tctgaggagc aaggacctgc tgcgacagct
     2641 gccagcatca aacttcaaca gtcttcatta cctcatcgtc catctgaagc gggtggtgga
     2701 ccatgcagaa gagaacaaga tgaattctaa gaacttgggg gtgatatttg gcccaacgct
     2761 cattaggcca aggcctacaa cggctcctgt caccatctcg tcccttgctg aatattccag
     2821 tcaggcacga gtagtagagt tcctcattac ttacgcacag aagatcttcg atgggtccct
     2881 ccagcctcaa gctggtgtca tagctaacac aggtgctatt gcacctcaag tcgatcacgg
     2941 gtgtcatcca aaaccgctct tatcaccaga tgagagagac tcggatcatt ctttgaaaca
     3001 actattcttc tcttcaaagg aagatatccg tactatggat tgtgagagca aaacttttga
     3061 attaactaca tcatttgaag aatcagaacg caaacaaaat gcattgggaa aatgtgatgc
     3121 tcccatcctt gataacaaag tacatttgct ttttgaccaa gagcttgagt cagcatccca
     3181 caagacggaa gatacctgta aaagccctaa gctgctcctt ctgagatctg atagggtagc
     3241 aaatagtgtg cagagaccga ctccgaggac caggctaaga cctgtaagtc tgcctgtgga
     3301 tcgactgctg ctgcttgccg ggtctcctac tgagagaagc agccggaata caggaaacac
     3361 agactcagac aagtttggca agaatgccgc ctttgaagga ctccatagaa aggacaactc
     3421 aaatactact tgttccaaag ttaatggctt tgaccagcaa aatgtacaga aatcctggga
     3481 caaacagaat gagcggaaca gtttcactgc caagactacg gtgattatcc ccagtgccta
     3541 tgccgagaag ggattggcag tgagcacggg gaacaacagg ggccattcca gtggtgctgc
     3601 ccagcctagt aaagcacatg cagaccccgc caggtctgca agagacacgt ccgagcacag
     3661 ctcctctgac tcctgccctg ttgctgctgt cagagcaccc agaacactgc agccccagca
     3721 ctggacaacg ttttacaaac cacctaaccc caccttcaat gtcaggggca ctgaggagaa
     3781 aacagcattc ccctcagcag ctgtgcctcc tgtcctggtg catgctcccc agagtcatgt
     3841 ggcaaagtca gacccagatt tggaggccac attggcttgt cctgtgcaga caagtggtca
     3901 acctaaagag agctctgagg agcccggcct gcctgagggg actccaacct gccagagacc
     3961 tcgactaaaa cgaatgcagc agtttgaaga ccttgaagat gaaatcccac agtttgtgta
     4021 ggattgtcaa attttagatg tttctgtttt aaaaaaaaaa aaaaaaaaaa aaaaaa
//
