LOCUS       NM_213629               3887 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Rho GTPase activating protein 20 (Arhgap20),
            mRNA.
ACCESSION   NM_213629 XM_345939
VERSION     NM_213629.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Curry,B.J., Su,H., Law,E.G., McLaughlin,E.A., Nixon,B. and
            Aitken,R.J.
  TITLE     Identification of RARhoGAP, a novel putative RhoGAP gene expressed
            in male germ cells
  JOURNAL   Genomics 84 (2), 406-418 (2004)
   PUBMED   15234003
  REMARK    GeneRIF: RARhoGAP expression was found in differentiating male germ
            cells and in the testis, suggesting that it may be involved in
            rearrangements of the cytoskeleton and cell signaling events that
            occur during spermatogenesis.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_213629.3.
            
            On Nov 27, 2020 this sequence version replaced NM_213629.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY501475.1, SRR26360181.1475476.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-190               JAXUCZ010000008.1  60970811-60971000
            191-273             JAXUCZ010000008.1  60989489-60989571
            274-438             JAXUCZ010000008.1  61015623-61015787
            439-588             JAXUCZ010000008.1  61018946-61019095
            589-630             JAXUCZ010000008.1  61023764-61023805
            631-715             JAXUCZ010000008.1  61024763-61024847
            716-793             JAXUCZ010000008.1  61027738-61027815
            794-860             JAXUCZ010000008.1  61030119-61030185
            861-1049            JAXUCZ010000008.1  61032763-61032951
            1050-1228           JAXUCZ010000008.1  61040157-61040335
            1229-1390           JAXUCZ010000008.1  61042130-61042291
            1391-1500           JAXUCZ010000008.1  61045383-61045492
            1501-1690           JAXUCZ010000008.1  61047579-61047768
            1691-1802           JAXUCZ010000008.1  61048730-61048841
            1803-3887           JAXUCZ010000008.1  61049967-61052051
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3887
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /note="Rho GTPase activating protein 20"
                     /db_xref="GeneID:367085"
                     /db_xref="RGD:1303160"
     exon            1..190
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            191..273
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     CDS             194..3634
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /note="RhoGTPase activating protein; rho-type
                     GTPase-activating protein 20; RA and RhoGAP
                     domain-containing protein"
                     /codon_start=1
                     /product="rho GTPase-activating protein 20"
                     /protein_id="NP_998794.2"
                     /db_xref="GeneID:367085"
                     /db_xref="RGD:1303160"
                     /translation="MKTLAERRRSAPSLILDKALQKRPSTRDSHSASIDTCAFLSSFM
                     CSSRTLLIDGPVELKRGLQRQERHLFLFNDLFVSAKIKYNNNFKIKNKVKLADMWTAS
                     CVDEVGEGNTNALKSFVLGWPTVNFVATFSSPEQKDKWLSLLQRYIALEKEKDYPKSI
                     PLKIFAKDIGNCAYFKTISVMNSDTASEVINMSLQMLGITGSERDYQLWVNSGKEAAP
                     YPLIGHEYPYGIKMSHLRDTALLTQGSKDSASPSQLQEPFLMEQLPREMQCQFILKPT
                     RLATAQQLSDSSHKTYKRRRSIINWAFWRGSSTHLDNLPVSPTSPMPGQLFGVSLPDI
                     CENDNLPKPILDMLSFLNQKGPLTKGIFRQSANMKSCRELKEKLNSGIEVHLDCESIF
                     VIASVLKDFLRNIPESIFSSDLYDHWVCVMDQGNDEEKINTIQRLLDQLPRANVVFLR
                     YLFGVLHNIEQHSLSNQMTAFNLAVCIAPSILWPPASSSPELENEFTKKVSLLIQFLI
                     ENCCRIFGEEITSLLGELSERSDREHTPDTSCFQLNDSSYDSLENELNEDADAPCSDL
                     VKRLGQGSRSMDSVLTLSDYDLEPPEAEGLLTLSNFDLDQSKEEHIRTKQPLETKPVS
                     VFVAYRKVSLGEHTRAPDGPGTPSCLPATASDARKVFRRHRRSSEPSIDYLDAKLSYL
                     REFYQKKLRKSSCDAVLSRKDEDYLKQTQPQKKGDQRCFKQSSVTGTDVSKRNTANEN
                     IKKKSLSGHEGIQETPFTKSKPVAISVASYMSSQDHSWEQPFEADACRFSPPHIADAQ
                     KSSRAHRRCSEPSIDDQNYKLSYLRGVYSKKQSKTSCEAGLLHGEEDYLKRHKSLQME
                     GQKLINQSLVMGIEVGKSSSSTNQSTEKVLPPRLNLCPRASYSSLSSPGTSPSGSSVS
                     SQDSAFSQISEHSVFTPTETSSPIDCTFRAQRKQEELSSDCDSPSLVSGMPGPSTGQA
                     SSHLAYLRKGTTEQLPQMHSVTLHPSTWLRSGLVTLKNWSLKKKTKAARPEDRKDCSL
                     KEPLELPACAAGTPEADSLQESQEDIHLGVDEGAGQTACGLSSYACQDSEQHASSPFC
                     LAGSRLTLGMKLHEGEESGGQYPCDNPWEGAPSGLETSEDAANTGVEPATVCNDGDRH
                     "
     exon            274..438
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            439..588
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            589..630
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            631..715
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            716..793
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            794..860
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            861..1049
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1228
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1390
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1500
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1690
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..1802
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
     exon            1803..3887
                     /gene="Arhgap20"
                     /gene_synonym="RARhoGAP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgcgcgc ctagcgccta gaagggttaa cggcccccgt gtggggtggg gaggtcacct
       61 cccgggatcc cccgctatct tctctggtgg gaacgggtct cggagaagcc ccttgcctct
      121 ccacctctga cccgggttgt gcctccctgc gagcctcccg aggtggcctt gacccgacag
      181 cctgaggaag aaaatgaaaa cgctagcaga aaggaggaga agcgccccat ccctcatcct
      241 ggacaaagcc ttacagaagc ggccgagcac cagagacagc cattctgcca gcattgacac
      301 gtgtgcgttt ctgtcgtcgt tcatgtgctc cagtcggact ctgctgattg atggtccagt
      361 ggaacttaaa cgaggcctgc agaggcagga gaggcatctt ttcctattca acgatctgtt
      421 tgtctcggcc aaaatcaaat ataacaacaa ttttaagata aagaataaag taaagctggc
      481 cgacatgtgg acagctagct gtgtggatga agtcggggaa ggcaacacaa acgctctgaa
      541 gtcctttgtc ctgggctggc ccacagtgaa cttcgtggcc actttcagtt ctccagaaca
      601 aaaggacaaa tggctctctc tccttcagag atacatcgct ctagaaaagg aaaaagacta
      661 cccgaagagc atccccctca aaatcttcgc caaggacatt gggaattgcg cctatttcaa
      721 aactatatca gtcatgaact cagacacagc gagtgaagtc atcaacatgt ccctgcaaat
      781 gttagggata actggctccg agagagatta ccaactatgg gtaaattctg gaaaagaagc
      841 ggcaccatac ccactcattg gacacgagta tccttatggg atcaaaatga gccatctccg
      901 agacactgcc cttctgacgc agggatcaaa agactccgcc agcccatccc agctccagga
      961 gcctttcctc atggagcagc tgccccgaga gatgcaatgc cagttcatcc tgaaacctac
     1021 ccgcctggcg acagcccagc agctgagtga ttccagccat aagacatata agaggaggcg
     1081 ctccatcatc aactgggctt tctggcgggg ctctagcaca cacctggaca atctgcccgt
     1141 gtcaccaaca tcccctatgc cagggcagct ctttggagtt tctttaccag atatttgcga
     1201 gaacgacaat ctgccaaagc ccatcttgga catgctctcc tttcttaacc aaaaaggccc
     1261 cctcacgaag ggcatcttca ggcagtcggc caacatgaag tcttgccgag agctaaagga
     1321 gaaactgaat tctggaattg aagtccacct cgactgtgaa tccatctttg tgatagcatc
     1381 cgtgttgaag gattttctga gaaatatccc agaaagtata ttttcatcag atctgtatga
     1441 tcactgggtc tgtgtaatgg atcaaggaaa tgatgaagaa aaaataaata caattcaaag
     1501 gctattagat cagcttccca gagccaatgt tgttttccta aggtatctgt ttggggtatt
     1561 acacaacatt gaacaacatt ccttatctaa tcagatgact gcatttaact tagcagtgtg
     1621 tatcgctcca agcattcttt ggcctcctgc ttcctccagt ccagagctag aaaatgaatt
     1681 tacaaaaaag gtttctctcc ttatacaatt tctgattgaa aattgctgta ggatatttgg
     1741 agaagaaatc acttctctct tgggggagct ttctgagaga agcgacagag aacacacccc
     1801 agatacgtct tgcttccagt tgaacgactc ctcctatgac agcttagaaa acgagctcaa
     1861 tgaggatgcc gatgccccgt gcagcgacct ggtcaaacgg ctcggccagg gtagcaggag
     1921 catggactca gtcttaaccc tcagtgacta tgaccttgaa ccgcccgaag cggaaggcct
     1981 tttaaccctg agcaactttg acttagatca gtctaaagag gagcacattc gaacgaaaca
     2041 acccctggag accaagccgg tgagtgtttt cgtagcctac aggaaggttt cactggggga
     2101 gcatactagg gcccccgatg gccccggtac acccagctgc ctgcctgcaa ctgcctcaga
     2161 tgcccggaaa gtctttcggc ggcaccggcg ctcctcagag cccagcattg actatctaga
     2221 cgcaaagctt tcctatctcc gggagtttta ccagaagaag ttacgcaagt ccagctgtga
     2281 tgccgtgctc tctagaaagg atgaggatta cctgaagcag acccagcctc agaagaaagg
     2341 ggatcagagg tgttttaaac agagctcagt gacgggcact gacgtcagca agaggaacac
     2401 tgctaatgaa aacattaaga agaaaagctt gtctggtcat gaaggaattc aagagacacc
     2461 tttcactaag tccaagccag tggccatttc tgtggcatct tacatgtcct cccaggacca
     2521 ttcctgggag cagccctttg aagcagatgc atgcaggttc tccccaccac acatagcaga
     2581 tgcccagaag agctcacggg cgcatcggcg ctgttccgaa cccagcatcg atgaccagaa
     2641 ctacaagctg tcctatctca ggggggtcta ctcaaagaag caaagtaaaa ccagctgtga
     2701 ggctggcctc ttgcatggcg aagaggatta tctcaaaagg cataagtctt tgcaaatgga
     2761 ggggcaaaag ctcattaatc agagtttggt catggggatt gaggtgggca agagcagcag
     2821 cagcacaaac caaagtactg agaaggtttt gcccccaaga ctaaaccttt gcccaagggc
     2881 tagctattcc agtttatctt cccccggcac atccccgtca ggttcctcgg taagctccca
     2941 ggacagtgct ttctctcaga tctctgaaca ctcggtgttt acacccacag aaacttcctc
     3001 tccaatagat tgcacttttc gggctcagag aaaacaggaa gagctttctt cagactgtga
     3061 cagtcccagc ctcgtttctg gaatgccggg tccctccacg gggcaggcca gcagccacct
     3121 agcttattta agaaagggta ccacagagca gctaccacaa atgcattctg taactcttca
     3181 ccccagcaca tggttgagaa gcggcttggt cactttaaaa aactggtccc tcaaaaagaa
     3241 aacaaaagca gccagacccg aggacagaaa agactgttcc ttaaaagaac ctctggaatt
     3301 acctgcatgt gctgctggga ccccagaggc tgactctcta caagagagcc aggaggacat
     3361 acacctaggg gtagatgaag gagctgggca aactgcctgt gggctcagct cttatgcctg
     3421 tcaggactca gagcaacacg ccagctcccc gttctgcctg gcaggaagca gactcacgct
     3481 tggtatgaag ttgcacgagg gagaggagag tggagggcag tacccttgtg ataacccttg
     3541 ggaaggagcc ccttcaggtc tggagacctc agaggatgca gccaacacag gtgtggaacc
     3601 tgcgacagtt tgcaatgacg gggacagaca ttaaccaaag accactgcct acaataagaa
     3661 tctgctatca aaacaacctg aagtctttaa ggacagggac tgggccaata aaaacacaga
     3721 cagtaatgag ataaccccgc ctgtaaggca cctgggatag gtagcacaag gacaatcatt
     3781 gctaacgtgg cagtttcttt gatgcagtta catggcaaaa ccctgtcgag atgtttcatg
     3841 atcttaaagt tgtgaaaggc ttttcctatt aaagcatggg ttgagtt
//
