LOCUS       NM_001168524            4170 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Rho GTPase activating protein 11A (Arhgap11a),
            mRNA.
ACCESSION   NM_001168524 XM_001074602 XM_230459
VERSION     NM_001168524.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Dec 12, 2009 this sequence version replaced
            XM_230459.4, XM_001074602.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.13763.1,
                                           SRR26643290.12652.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-393               JAXUCZ010000003.1  121061076-121061468 c
            394-464             JAXUCZ010000003.1  121058331-121058401 c
            465-561             JAXUCZ010000003.1  121056309-121056405 c
            562-815             JAXUCZ010000003.1  121055755-121056008 c
            816-979             JAXUCZ010000003.1  121054945-121055108 c
            980-1123            JAXUCZ010000003.1  121054625-121054768 c
            1124-1198           JAXUCZ010000003.1  121053654-121053728 c
            1199-1366           JAXUCZ010000003.1  121052642-121052809 c
            1367-1493           JAXUCZ010000003.1  121050407-121050533 c
            1494-1599           JAXUCZ010000003.1  121049889-121049994 c
            1600-1738           JAXUCZ010000003.1  121047926-121048064 c
            1739-4170           JAXUCZ010000003.1  121045187-121047618 c
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..4170
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /note="Rho GTPase activating protein 11A"
                     /db_xref="GeneID:296060"
                     /db_xref="RGD:1309107"
     exon            1..393
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..3249
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /codon_start=1
                     /product="rho GTPase-activating protein 11A"
                     /protein_id="NP_001161996.1"
                     /db_xref="GeneID:296060"
                     /db_xref="RGD:1309107"
                     /translation="MWDQRLVRLALLQQLRAVYGIKVKGGRGQCDRRRQETAATEIRG
                     KIFGVPFNSLPHSVVPEYGHIPSFLVDACTSLKEHIHTEGLFRKSGSVIRLKALKSKL
                     DHGEACLSSALPCDVAGLLKQFFRELPEPVLPADLHEALFKAQQLGAEERNKATLLLS
                     CLMADPTVDVLRYFFNFLKSVSLRASENKMDSSNLAVIFAPNLLQTSEGHEKMSANTE
                     KKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCTTPSLEGFEGDYETPGE
                     CKRKRRQSVGDFVNGALNKLKSSRTPSITPQQDRTAQAPVSPLILTPSVKRKLPGETS
                     HTLSSKKRKSIKNNLNFELLPSHLFSSNSTPVSVHFDTSPEGSSQSSLSPIAMSGNHL
                     TSTDLRRSKRIASKKVYRVESGKAGCFSPKVTRKEKVRRSLRLKFSLRKNRDSNGCSV
                     INRHENVGRRLANQQNLKNRIESVKTGLLFSPDIDERLLKKGSEKISKSEEHLLTPDQ
                     LDGTGYRMSWTEPSNSSFQDMSANGTSPIMQNLEVKSFSLESNITVEKSPVVSCELRP
                     STFHSQPNSSVLGRSLSGDEGNLAFETLQKIQKAFSESGSDLHTAVNHEQSSVTNVGE
                     EGESRDVSESKGHDGSYTGQDENYASERNLSPSQSPELAREASEECHSTQMKVGCESL
                     HSETPRADLLQQAFPSEEPTKETQSPGSQLDTTPSQGDENVVEENSGACEAPEENDAQ
                     SLKQSTCSVTVISKPRAQRLARQRSLVEKCDSAVPGGPQMTEHGKVSDHIQWFNKLSL
                     NEPNRGKVKSPLKFQRTPVRQSVRRINSLLEYGRQPVRQKLAVFGDAASPLVKSVSCD
                     SALPSCVQSTSKGPCVPHTKPGLEAQKCTSCDKSSVELTSKSFTKMKRHPDPLNASLA
                     TTRLCKQENKSDVQIKFPLDDLTNHDRLKFVVNNNVDFPPGIKNRVLKKPLEKERVWY
                     KGSPKNPIGKTQLLPTSKPVDL"
     exon            394..464
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            465..561
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            562..815
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            816..979
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1123
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1198
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..1366
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1493
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1599
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1738
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..4170
                     /gene="Arhgap11a"
                     /gene_synonym="RGD1309107"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtaactga cagggccgag tggcccggaa agaaggctgg tggaagtgaa actagagtga
       61 agtgtggcgg gagagaagaa ggtctgtgta agtgggtcga gggaaagtgg aggaagtggc
      121 tggagccaga agagtgccaa aggtggccgg aaggcagcgg agcagagctc tagtctgagg
      181 gtgttaggaa attggaagag ttggttggtg gcaaagaaag tcaggacccg gagtcggcct
      241 cggagagtgg gcgacgtgtt cgggatgtgg gatcagagac tggtcagatt ggccctgctg
      301 cagcagcttc gggctgtcta tggcattaag gtcaagggtg gccgcggtca gtgtgatcgc
      361 agaagacagg aaactgcagc tacggaaata aggggtaaga tatttggagt tccctttaat
      421 tccttgcctc attcagttgt tccagaatat ggacacattc caagctttct tgttgatgca
      481 tgcacatctt taaaagaaca tattcatacg gaagggcttt ttaggaagtc aggatctgtt
      541 attcgtctga aggcactcaa gagtaaactg gatcatggtg aagcctgcct gtcttctgca
      601 cttccctgtg atgttgcagg cctgcttaag cagttcttca gggaattgcc agagcctgtc
      661 ctcccagctg atctgcatga agcacttttc aaagctcagc agttaggagc agaggagagg
      721 aataaagcta cattgttgct gtcgtgcctt atggcagatc ctacagttga tgtattaaga
      781 tacttcttta actttcttaa gagtgtttct cttagggcaa gtgagaataa aatggacagc
      841 agcaatcttg cagtaatatt tgcaccaaat cttcttcaga caagtgaagg ccatgagaag
      901 atgtctgcca acacagagaa gaagctgcgt cttcaggcag cagtagtgca gacgcttatt
      961 gactatgcat cggacattgg acgagtacca gattttatcc tggaaaagat accagccatg
     1021 ctaggtattg atggactctg tactactcca tccctggaag gctttgaagg agactatgaa
     1081 actcccggtg aatgtaagag aaaaagaaga caaagtgttg gagattttgt gaatggagcc
     1141 ctaaataaac ttaaatctag cagaacaccc tctattacac ctcaacaaga cagaacagcc
     1201 caggcccctg tatcaccact gattctcaca ccaagtgtta aacgtaaact gccaggagag
     1261 acttcccata ccttgtcgag taagaaaagg aagtccatca agaacaactt gaactttgag
     1321 ctgttgccaa gtcatctctt cagcagcaat tctacaccag tatcagttca ctttgataca
     1381 agccctgaag ggtcatctca gagttctctc tcaccaattg ccatgagtgg aaaccacttg
     1441 accagtacag acctaaggcg aagtaaaagg attgccagca aaaaagttta cagggtagaa
     1501 tcaggaaaag caggctgctt ctctcccaaa gtcactcgta aagaaaaggt ccgaagatct
     1561 ctccgtctga aatttagtct gaggaagaac agagattcaa atggatgttc tgtcatcaat
     1621 agacatgaaa atgttggtcg acgactagcg aatcagcaga atctaaaaaa taggattgag
     1681 tctgtaaaaa cgggtctgct ttttagccca gatattgatg aaagattgct aaagaaaggc
     1741 tcagaaaaga tcagcaaatc cgaggaacat ttactaactc cagatcaact agatggaaca
     1801 ggttaccgga tgtcttggac agaacccagt aattcaagtt ttcaagacat gagtgcaaat
     1861 ggaacttctc caataatgca aaatcttgag gtgaagagct tttctttgga gtccaacatt
     1921 actgtagaaa aatcaccagt cgtgtcctgt gagctcaggc cttccacctt ccatagccaa
     1981 cccaacagca gtgtactggg caggtccctt agtggggacg aaggtaacct ggcctttgag
     2041 accttgcaaa agattcagaa agcattttcg gaatctggga gtgatcttca tacagcagta
     2101 aatcatgagc agtcgtcagt aacaaatgtg ggagaagaag gtgaatccag agatgtgagt
     2161 gagtcaaagg gacatgatgg gagctataca gggcaggatg agaactatgc ttcagaaagg
     2221 aatctctcac cgtctcaaag tccagaactt gccagagaag ccagtgagga atgtcactca
     2281 actcagatga aggtgggatg tgaaagcctg cactcagaaa cacccagagc tgacctcctt
     2341 cagcaagcat tccccagtga ggagccaacc aaggaaacac agtccccagg gagccaacta
     2401 gataccacac cgtcacaggg ggatgagaat gtggtggagg agaactcagg ggcatgtgaa
     2461 gctcctgagg aaaatgatgc gcagtcttta aagcagagca cgtgcagtgt gacagtcatt
     2521 tcaaaacctc gggcccagag acttgctaga caacggtcac tggtggaaaa atgtgacagt
     2581 gcagttcctg ggggtccaca aatgacagag cacgggaagg tttctgatca catacagtgg
     2641 tttaataaac tttctctaaa tgaaccgaac agaggaaaag tgaagtcacc tcttaaattt
     2701 caacgtactc ctgtccgtca gtctgtcaga agaattaatt ctttgttgga gtatggcagg
     2761 cagcctgtga ggcagaagtt ggcagtcttt ggtgatgcag cttctcctct tgttaaatca
     2821 gtgagctgtg acagtgctct tccctcttgt gtacagagca catcaaaagg tccatgtgtt
     2881 ccacatacta agccaggtct tgaagcacag aagtgtacgt cttgtgataa gtccagtgtt
     2941 gagttaacat ctaaatcttt cacaaaaatg aagagacatc cggatccttt gaatgcttct
     3001 cttgccacta cgagactttg taaacaggag aacaaatctg atgtccaaat taagtttcct
     3061 ttggatgatc tcactaatca tgatagatta aaatttgttg taaataacaa tgtggacttt
     3121 cctccaggga taaaaaacag agttcttaag aaaccattag aaaaagaaag ggtctggtac
     3181 aaaggttctc ctaaaaatcc tattggaaag actcaactgc taccaacgag taagcctgta
     3241 gacttgtaac tgtcaaatat agtgccgtca tcagtgtaaa taaagttagc gattgctggg
     3301 tcgggttgca gaatgctcga gtgccggtgt gtagataagg tggggcggtt gcaggatgct
     3361 tgtgtgctag ggtgtagctc aggatgcttg ttcagcagat tctctgtaaa gtggtcccca
     3421 ctgctccagt aatttcatct ttcatacttg gacataaagc tattttgtat ttctttatta
     3481 ctgaagcatt tagacttaac tttatggtga tttcctgaag cagagtttat aactttaaag
     3541 acattgttgg ctagatttat ttatgtaaga aagggacatg agttttattc tgcatgcatg
     3601 atcagagaat gcaggaagtt gtgcttgtac ctcttgttat tccttcacat caggaacatt
     3661 gtccactgga aacatctaat acgtaaaggg aatgataaag ccctacttat gtcttgaatt
     3721 attcatgttt gtgatcttga cccaaaacca agaagttaat tggcctcagt ggtgttggaa
     3781 cccttactct tgttgggaca gagggatttt gtcagcatcg cctgtggttt cacttcaatt
     3841 ttgaaataaa gacagtgaat aaaacagaat gacgaccaat atgctttcta tcatgatgtt
     3901 gaggaaactg attaatctta agccatatgt catttttaaa ggtgattttg atcatatttt
     3961 gtccaatatg acaatgaaat ttttgggagg tataattaaa cttgaaaatt ttaatcaagg
     4021 tgggtttttt cctatgaaga tggttgattt tagaatttga attgttaatg taccactgta
     4081 catttgacat agatgaatat ctgatagtgt tttgtgttta aatgttattt atttagtata
     4141 gtcattaaaa atagcttctg ggaaacgtct
//
