LOCUS       XM_006234560            2886 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Rho GTPase activating protein 1
            (Arhgap1), transcript variant X5, mRNA.
ACCESSION   XM_006234560
VERSION     XM_006234560.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006234560.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006234560.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2886
                     /gene="Arhgap1"
                     /note="Rho GTPase activating protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 58 ESTs, 11 long SRA reads, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 232 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311193"
                     /db_xref="RGD:1306068"
     CDS             145..1464
                     /gene="Arhgap1"
                     /codon_start=1
                     /product="rho GTPase-activating protein 1 isoform X1"
                     /protein_id="XP_006234622.1"
                     /db_xref="GeneID:311193"
                     /db_xref="RGD:1306068"
                     /translation="MDPLSELQDDLTLDDTSQALNQLKLASIDEKNWPSDEMPDFPKS
                     DDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHS
                     KLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYI
                     VHPTMFIKTLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLK
                     STQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPNQEPIPIVLRETVAYLQAHALT
                     AEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDL
                     YPHIVGFLDLDDDQRVEVTQQVLQTLPEENYRVLHFLTAFLVQVSAHSYQNRMNNTNL
                     AVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSTDAQGV"
ORIGIN      
        1 ggggcggttc ccattcccac ctcggagccg gatgtttgcc gagctttgac aggcgtggca
       61 aagggagcat tacccgaacg cggtgagctg caaagcgcgg ggtctcactg ggcgtggtgg
      121 cttctcttct ggttctcctt agccatggat cctctctcag aactgcaaga tgacctgacc
      181 ctggatgata ccagccaagc cctgaaccag ttgaagctgg cctctattga tgagaagaac
      241 tggccttctg atgaaatgcc agactttccc aagtcagatg actccaaaag cagctctcca
      301 gaacctgtca cacacctgaa gtgggatgac ccttactacg acattgccag gcaccagatt
      361 gtggaagtgg caggtgatga taagtacggg cggaagataa ttgtatttag tgcttgccgg
      421 atgcccccca gccaccagct ggaccacagc aagctcttgg ggtacttgaa acacacactg
      481 gaccagtatg tggaaagtga ctacacactc ctgtacctgc accatggcct gaccagtgac
      541 aacaagccct ccctcagctg gctacgggat gcctaccgag agtttgaccg caagtacaag
      601 aagaacatca aggctctgta cattgtgcac ccaaccatgt tcatcaaaac tctgcttatc
      661 ctctttaagc ccctcatcag tttcaagttt ggacggaaga tcttctatgt gaattacctg
      721 agtgagttaa gcgagcacgt gaagctggag cagttgggga tccctcgcca agtgctcaag
      781 tatgatgact tcctcaagtc cacccagaag agccctgcaa cagctcccaa gcccatgcca
      841 ccacggcccc ccctgcctaa tcagcaattt ggggtctcgt tacagcacct ccgggagaaa
      901 aacccgaacc aggagcccat ccccattgtg ctcagggaga cagtcgccta cttgcaggcg
      961 cacgctctca ccgccgaggg catcttccgg aggtctgcca acacccaggt agtaagagaa
     1021 gtgcagcaga aatacaatat ggggctgcca gtggactttg accagtacaa tgagctgcac
     1081 ctgccagccg tcatactcaa gacattcctt cgggagcttc ctgaaccctt gctaaccttt
     1141 gacctctacc cccacattgt gggcttcctc gatcttgatg acgaccagag agtggaggta
     1201 acacagcagg ttctccaaac tctgccagag gagaactacc gggtacttca cttcctgact
     1261 gccttccttg tacaggtatc tgcccactct taccagaaca ggatgaataa cactaacctg
     1321 gctgtggtct tcggccctaa cctgctgtgg gctaaggatg ctgccatcac cctcaaggcc
     1381 attaatccca tcaacacctt cactaaattc ctcctggatc atcaagggga attgttcccc
     1441 agcacagatg cccagggggt ctgagctcag cccccacctc cagccccttc tctggcagct
     1501 ccagttggac ttgtcctcct ggtatcaacc ttattggagc ttctgcctag gaagggaccc
     1561 tgaagcccct cccaggagat gtaggttgga gcccactaac tgggcagccc ctcctctccc
     1621 tctgtccatc ccaccttacc ggccctggag gcctgttacc ctaagacatt ttctttgcct
     1681 tacacttctc actgcctctt tggttgctgg gcttgactct tccaggattc agcccaagta
     1741 atccttttct ttttttcctg cctgtttccc tggcaactgt agaagactac atcactgcca
     1801 gctgtgctgg tagctggggc tggtcctctc ttgcctgtta ggaagtgagt gttgacctgg
     1861 gtgcaagttc cccgtgcctg ccctccctac tagtagggat gaccagagtt ggcctgtcac
     1921 ttctgcctcc agggtctgtt cctccccaag tggtactgcc cccagagtgt cctgtcccct
     1981 catttctgcc acacttggca ccttggatat ctatcaagac tcagaatctg agtccctatt
     2041 gaaatggtct tgtccactcc cagggagagc catagtgtct ggtgggatca gttccagcag
     2101 tcctggccct ccatgccttc ccttcattct cacgtgcaca gaccttcagc caaaggctgc
     2161 acagtagatc tttctggtgt ggagtcactc taatccctgt tctggccagg gattctaatg
     2221 cctcaggatc catggtagct ctcacctctt gcctggggac tcttggagag tcaggagctc
     2281 agaagcccct aagattgtca gatgttttac taatagatca cccctgctag ataggttcta
     2341 gcaattccct taggggagtg tggtggccat aggccctctt gactttcaga aagcctgaac
     2401 cccagtgatt ggtaactttc actctattcc tagtgaagcc ttgtgaccct cttcctgaag
     2461 tctgtcccct aatgacaggg agctagctgc agtggccctg ccctacaggt gtggccaggc
     2521 acaccagctg gagaggcggt actgggtact gtaggatctg cactgatgac cttgcagagg
     2581 aggctctttg ctgcaccact gttgtgtcag gtgcttcaag tgctgctgtc agtccccagc
     2641 cttatacctg cccagcctgg gcctttgctt ctgtccactc tggtgtcgag tgtcgctaca
     2701 ctccacttac tgagggccat ccggacctct tttgtctttc tcttgcccct gccctgtcag
     2761 tctgtggctg ggggtgcttt tactgtgaat ccagtgttca catttaccac aatttccttg
     2821 gcaccaatca tgtattttac cgtttgcact ttttgtattt caataaaaat gtaaatgaaa
     2881 aatgcc
//
