LOCUS       NM_024149               1057 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Rattus norvegicus ARF GTPase 5 (Arf5), mRNA.
ACCESSION   NM_024149
VERSION     NM_024149.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Yu,J., Chia,J., Canning,C.A., Jones,C.M., Bard,F.A. and
            Virshup,D.M.
  TITLE     WLS retrograde transport to the endoplasmic reticulum during Wnt
            secretion
  JOURNAL   Dev Cell 29 (3), 277-291 (2014)
   PUBMED   24768165
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Sadakata,T., Shinoda,Y., Sekine,Y., Saruta,C., Itakura,M.,
            Takahashi,M. and Furuichi,T.
  TITLE     Interaction of calcium-dependent activator protein for secretion 1
            (CAPS1) with the class II ADP-ribosylation factor small GTPases is
            required for dense-core vesicle trafficking in the trans-Golgi
            network
  JOURNAL   J Biol Chem 285 (49), 38710-38719 (2010)
   PUBMED   20921225
  REMARK    GeneRIF: a functional role for CAPS1 in regulating DCV trafficking
            in the trans-Golgi network; this activity occurs via
            protein-protein interaction with ARF4/ARF5 in a GDP-dependent
            manner.
REFERENCE   3  (bases 1 to 1057)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   4  (bases 1 to 1057)
  AUTHORS   Andreev,J., Simon,J.P., Sabatini,D.D., Kam,J., Plowman,G.,
            Randazzo,P.A. and Schlessinger,J.
  TITLE     Identification of a new Pyk2 target protein with Arf-GAP activity
  JOURNAL   Mol Cell Biol 19 (3), 2338-2350 (1999)
   PUBMED   10022920
REFERENCE   5  (bases 1 to 1057)
  AUTHORS   Hosaka,M., Toda,K., Takatsu,H., Torii,S., Murakami,K. and
            Nakayama,K.
  TITLE     Structure and intracellular localization of mouse ADP-ribosylation
            factors type 1 to type 6 (ARF1-ARF6)
  JOURNAL   J Biochem 120 (4), 813-819 (1996)
   PUBMED   8947846
REFERENCE   6  (bases 1 to 1057)
  AUTHORS   Price,S.R., Nightingale,M.S., Tsuchiya,M., Moss,J. and Vaughan,M.
  TITLE     Interspecies relationships among ADP-ribosylation factors (ARFs):
            evidence of evolutionary pressure to maintain individual identities
  JOURNAL   Mol Cell Biochem 159 (1), 15-23 (1996)
   PUBMED   8813705
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 26, 2020 this sequence version replaced NM_024149.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L12384.1, BC087692.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               JAXUCZ010000004.1  58003971-58004131
            162-242             JAXUCZ010000004.1  58004654-58004734
            243-352             JAXUCZ010000004.1  58005102-58005211
            353-424             JAXUCZ010000004.1  58005563-58005634
            425-550             JAXUCZ010000004.1  58006153-58006278
            551-1057            JAXUCZ010000004.1  58006391-58006897
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1057
                     /gene="Arf5"
                     /note="ARF GTPase 5"
                     /db_xref="GeneID:79117"
                     /db_xref="RGD:621278"
     exon            1..161
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..637
                     /gene="Arf5"
                     /codon_start=1
                     /product="ADP-ribosylation factor 5"
                     /protein_id="NP_077063.1"
                     /db_xref="GeneID:79117"
                     /db_xref="RGD:621278"
                     /translation="MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
                     TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQE
                     SADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA
                     TQGTGLYDGLDWLSHELSKR"
     exon            162..242
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
     exon            243..352
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
     exon            353..424
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
     exon            425..550
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
     exon            551..1057
                     /gene="Arf5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctccttctg ctgttgcgcc ccatcccccc gcggccggcc ggttccagcc ctcgccccgc
       61 gtcccctgcc cgcgcccccg ccccgggccc cgccatgggc ctcacggtgt ccgcgctctt
      121 ttcgcggatc ttcgggaaga agcagatgcg gatccttatg gttggcttgg atgcggctgg
      181 caagactacc atcctgtaca aactgaagtt gggggagatt gtcaccacca tccccaccat
      241 aggcttcaat gtggaaacag tggaatataa gaacatctgt ttcacagtct gggatgtcgg
      301 aggccaggat aagattcggc ctttgtggcg gcactacttc cagaacactc agggcctcat
      361 ctttgtggtg gacagcaatg accgggagcg ggtccaggag tctgctgatg aactccagaa
      421 gatgctgcag gaggatgagc ttcgggatgc ggtgctgttg gtgtttgcca acaagcagga
      481 catgcccaat gccatgcctg tgagcgaact gactgacaag ctggggcttc aacacttgcg
      541 tagccgcacg tggtacgtcc aggccacctg tgccacccaa ggcacaggcc tgtatgatgg
      601 tctggactgg ctgtcccatg agctatcaaa gcgctagcca gccaggggca ggcccctgct
      661 gcccggaagc tcccgcgtgc atcccgggat ggccagactc ccggactcct caggcagtgc
      721 ccttccttcc cacttttcct ccccacagac aggcctctgc tcctgtgcct gcctgcatgc
      781 tctctcttgt tgttggagcc tggagccttg ctctctgggc acagagggtt ctgctctcct
      841 gcctgctggg acctgtggaa gggcttcctg gccaaggccc cctcttccag gggaggagca
      901 gggatctgga tttaatttcg ttttggtttt ggtttttttg gtttttttct gttttgggtg
      961 tacccttggg gccaggtttg gggggaggaa agtgagggct ccgggtggtg ctatgatgtg
     1021 ggactggata ttgagtaata aatttgctgt ggtttgt
//
