LOCUS       NM_080904               3500 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Rattus norvegicus ARF GTPase 3 (Arf3), mRNA.
ACCESSION   NM_080904 XM_006257320
VERSION     NM_080904.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3500)
  AUTHORS   Yu,J., Chia,J., Canning,C.A., Jones,C.M., Bard,F.A. and
            Virshup,D.M.
  TITLE     WLS retrograde transport to the endoplasmic reticulum during Wnt
            secretion
  JOURNAL   Dev Cell 29 (3), 277-291 (2014)
   PUBMED   24768165
REFERENCE   2  (bases 1 to 3500)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   3  (bases 1 to 3500)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   4  (bases 1 to 3500)
  AUTHORS   Hosaka,M., Toda,K., Takatsu,H., Torii,S., Murakami,K. and
            Nakayama,K.
  TITLE     Structure and intracellular localization of mouse ADP-ribosylation
            factors type 1 to type 6 (ARF1-ARF6)
  JOURNAL   J Biochem 120 (4), 813-819 (1996)
   PUBMED   8947846
REFERENCE   5  (bases 1 to 3500)
  AUTHORS   Price,S.R., Nightingale,M.S., Tsuchiya,M., Moss,J. and Vaughan,M.
  TITLE     Interspecies relationships among ADP-ribosylation factors (ARFs):
            evidence of evolutionary pressure to maintain individual identities
  JOURNAL   Mol Cell Biochem 159 (1), 15-23 (1996)
   PUBMED   8813705
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before Mar 18, 2021 this sequence version replaced
            XM_006257320.4, NM_080904.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.27696.1,
                                           SRR26643291.21763.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840106, SAMN12840109
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               JAXUCZ010000007.1  131790788-131790979 c
            193-430             JAXUCZ010000007.1  131769886-131770123 c
            431-541             JAXUCZ010000007.1  131768729-131768839 c
            542-666             JAXUCZ010000007.1  131768409-131768533 c
            667-3500            JAXUCZ010000007.1  131765039-131767872 c
FEATURES             Location/Qualifiers
     source          1..3500
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..3500
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /note="ARF GTPase 3"
                     /db_xref="GeneID:140940"
                     /db_xref="RGD:621273"
     exon            1..192
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /inference="alignment:Splign:2.1.0"
     exon            193..430
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /inference="alignment:Splign:2.1.0"
     CDS             283..828
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /note="liver regeneration-related protein LRRG202"
                     /codon_start=1
                     /product="ADP-ribosylation factor 3"
                     /protein_id="NP_543180.1"
                     /db_xref="GeneID:140940"
                     /db_xref="RGD:621273"
                     /translation="MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
                     TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE
                     AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA
                     TSGDGLYEGLDWLANQLKNKK"
     exon            431..541
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /inference="alignment:Splign:2.1.0"
     exon            542..666
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /inference="alignment:Splign:2.1.0"
     exon            667..3500
                     /gene="Arf3"
                     /gene_synonym="Ac1-253"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcacagctcc tgtcgccgtc gcggcttccg gtgctaggtg gagggagggc aggagggagc
       61 cgccgggagc gggccagcgg accagctacg ccgcggtcgg cttgcggagc gggaggcagc
      121 ggccggagag ccaggcggaa cctgcggggg cggaggcggc ggtggcagcc ggggcgcaga
      181 gagcaggaac aggatcaagc cctccatacc agggaccagg ctaaaaccag attaccactg
      241 cccctacctg ggccctgttg acttaaagca gccactgtaa tcatgggcaa tatctttggg
      301 aaccttctga agagcctgat cgggaagaag gagatgcgca tcctgatggt gggcctggat
      361 gctgcaggaa agaccaccat cctctataag ctgaagcttg gcgagattgt taccaccatt
      421 cccaccatcg ggtttaatgt ggagacagtg gaatataaga atatcagctt cacagtatgg
      481 gacgtaggtg gccaggacaa gattcggccc ctctggagac actacttcca gaatacccaa
      541 ggcttgatat ttgtggttga cagcaatgac cgggagcgag tgaacgaggc ccgggaagag
      601 ctgatgagga tgctggcgga ggatgagctc cgggatgctg tgctgcttgt gtttgcaaac
      661 aaacaggatt tgccgaatgc tatgaatgct gctgagatca cagacaagct gggcctgcac
      721 tctctgcgcc accgcaattg gtacattcag gccacctgtg ccaccagcgg ggacgggctc
      781 tatgaaggct tggactggct ggccaatcag ctcaaaaaca agaagtgaga gccaggcagc
      841 cctctctgac taccccaccc actcctgaaa catacctgtt gtctccttac cccaatttcc
      901 ccctttcttc ctcatgaaag tgtggccaag gtcctgggtg tcatgtccac tgcccagcaa
      961 gcgcctttcc tcctgagcct cccgccccct tccttgtgca ctgacacggt cagcccccac
     1021 tgctgtcctg atgatgagtc attccaatct actgggttta aaccagaagg aggctgttat
     1081 ggtttcgtgg ggtccccctt ggtttcagga ggaagagtgg ggacgtttcc tctgtttgct
     1141 gtttggcact ggttgctgtg ctcttggcat ctgagtccct tccctgagtc cctggccact
     1201 ctcttccctg tcttcctttc cttctacacc ctcctattct acatggacat tggacattgc
     1261 acgggcctct ctgtgtgtgc gtgcatgtgt gcgcctgtat atatgtgtat agagagatat
     1321 atctgtgggg tcaggggagg gagtggagcg cagctcaggg cttgcagcca ggacactgca
     1381 cactagaccc tgtcacctgc ccttctgtgt tggtgagaga aggggatgtg ggtgagtccc
     1441 attgctttcc tctgtgggtg agagaagggg atgtgggtga gtcccattgc tttcctctgc
     1501 aggcggcatt cctgggtgtt aggagagact gagctccaac agtcatctgt cttctcttcc
     1561 cttctccacc cttatgagca cacgaaatgg cattgatctc tgggtcactg ttccaagggg
     1621 atgccatcct cctctgcttc attagtggga aggaaaggag cccactcacg ttgtcagtct
     1681 agtcaggagt gttcagttgc tcctctccca tcaacctcac ttctgctccc caggaactcg
     1741 agggaggtgg cttagtggga cctgatgtat tggggcctgc atgttggggg gtggacagcg
     1801 gtttagggaa ggaaggccca gactttccat cttactcttg tacccatgga gcaggcctgt
     1861 tcctgccttt gggccttggg ggctgggtgg ttctgtctgt cagagatccc tcagtagatc
     1921 tgctgacccg atgagcactg actaagtgga gtaatgacaa ggaagccatg gattggggtg
     1981 acatagccaa cctcagtgtc acctctgttc tccagtctag tctctgtcta gtgcaggacc
     2041 agacgagatg agcttctgct gtgctcacgg tcctgtcccc tcctctctgg cagtgttccc
     2101 cagtcctcaa cctgtccctg gataggatgg tggggtggaa tggatgccgt aggaccctgt
     2161 acggctgggg ctggaaccct gatcttcagg gccttccctc aatcattctc tgcctgttca
     2221 gctgctgctg caggtctgta gagggcgctt gttgcagaag ctttgacctg ggtcctgact
     2281 tatcactgca ctgaagctgc ggctgttctg tgggctcctg tgtgtgctgg ctgcgccctg
     2341 agctccaaaa cagctgccca tatcctgtct gctaaggtca ggaccctggg ctctctgcag
     2401 catggccaac ggacccttcc cagagggctg ttctgagttg tacttgatgg ccaggtttcc
     2461 tgccaccttt gacttctaca gcaggcagat aggttcccag cttactgtga gaatgtgtgc
     2521 ttgtgcaagg ttccaggata tgtctcagtc aggtagtgct gtgctacccc agataccaca
     2581 ccatggcggg gtgtgctcta gacctggtgt ccatgtgtgt gtccgtgcgt gagtgtgtgc
     2641 gtgccatgtg tgagtgtgtg atctctacag ggggtgccag gggttctgtt tcattttcaa
     2701 tgggttcctt ccattcccaa cactgcgctc ttctctttac agttcctgag tcttcccctg
     2761 tcgctctcat tctctctgcc gttttcaagt caccccctct gttgctgctg tgagcgcctg
     2821 tttgcctttt cggttgactc accactttgc ctgtttgttt ttgatttagt ttttgtcttc
     2881 tatctgattt tctactctct ctttgctttg aggttggtga ggactttgcc ttttactctg
     2941 ccacgctttc tgacctttcc tacttagatg ctagttccag ataagttgtg tacattgcag
     3001 acttcattcc actactgcac cccttaccac agcatcttct ttttctccac ctcctgggac
     3061 caacctaagg ctgagcaggc tgaagtagcc ttgagtgttg ccttggtgcc tgctgctcca
     3121 gatatgtcca gcagagggca gtgacatctt ggtaacatct ggctttgtgg tggggttggg
     3181 gagctttcta cattccctaa tcagtcttta agggttgggc atttcatccc atttctgtga
     3241 acccctctct tgcttttctc aagtttaatt tttgatcttg ttctaccttt cttttgtggg
     3301 gactctccct tccctccacc tccagaattt atggtgttac agtggtatct gcagttctga
     3361 agtgggtttt ttctttttgc tgtctctgga atgtagactg tacgtgttta ataacttgcc
     3421 ttctctatcc ttgctcagaa atgtggataa tgcaatggct gtgaccctgg ttggaaatta
     3481 aacttgtttt atgcagcttt
//
