LOCUS       NM_001007662            3485 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus archain 1 (Arcn1), mRNA.
ACCESSION   NM_001007662 XM_217133
VERSION     NM_001007662.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Xu,X., Kedlaya,R., Higuchi,H., Ikeda,S., Justice,M.J., Setaluri,V.
            and Ikeda,A.
  TITLE     Mutation in archain 1, a subunit of COPI coatomer complex, causes
            diluted coat color and Purkinje cell degeneration
  JOURNAL   PLoS Genet 6 (5), e1000956 (2010)
   PUBMED   20502676
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3485)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 3485)
  AUTHORS   Hata,S., Koyama,S., Kawahara,H., Doi,N., Maeda,T.,
            Toyama-Sorimachi,N., Abe,K., Suzuki,K. and Sorimachi,H.
  TITLE     Stomach-specific calpain, nCL-2, localizes in mucus cells and
            proteolyzes the beta-subunit of coatomer complex, beta-COP
  JOURNAL   J Biol Chem 281 (16), 11214-11224 (2006)
   PUBMED   16476741
  REMARK    GeneRIF: nCL-2, localizes in mucus cells and proteolyzes the
            beta-subunit of coatomer complex, beta-COP
REFERENCE   5  (bases 1 to 3485)
  AUTHORS   Lowe,M. and Kreis,T.E.
  TITLE     In vivo assembly of coatomer, the COP-I coat precursor
  JOURNAL   J Biol Chem 271 (48), 30725-30730 (1996)
   PUBMED   8940050
REFERENCE   6  (bases 1 to 3485)
  AUTHORS   Orcl,L., Palmer,D.J., Amherdt,M. and Rothman,J.E.
  TITLE     Coated vesicle assembly in the Golgi requires only coatomer and ARF
            proteins from the cytosol
  JOURNAL   Nature 364 (6439), 732-734 (1993)
   PUBMED   8355790
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081979.1.
            
            On Nov 29, 2004 this sequence version replaced XM_217133.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081979.1, SRR8487231.166115.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..3485
                     /gene="Arcn1"
                     /note="archain 1"
                     /db_xref="GeneID:300674"
                     /db_xref="RGD:1359110"
     exon            1..125
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..1658
                     /gene="Arcn1"
                     /note="delta-COP; delta-coat protein"
                     /codon_start=1
                     /product="coatomer subunit delta"
                     /protein_id="NP_001007663.1"
                     /db_xref="GeneID:300674"
                     /db_xref="RGD:1359110"
                     /translation="MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGK
                     QHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEI
                     SEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMR
                     RKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETDKPKVAPAPAR
                     PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGKRTSEAAKVHAPPINMESVHM
                     KIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVD
                     KKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVN
                     IEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAKNK
                     SGSLEFSIPGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKY
                     EIL"
     exon            126..389
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            390..569
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            570..775
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            776..940
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1106
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1254
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1363
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1568
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..3461
                     /gene="Arcn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaagcggag gaggctcctg tcaggggcag caggtccgga gcggccagag ctccgcttct
       61 ctgggcggta gcccgagctc ctccagagcc agagcgcggc gcgccccacc tgcggcctca
      121 ccatggtgct gttggcggca gcggtctgca cgaaagcggg aaaggcaatt gtttctcgac
      181 agtttgtgga gatgacccga actcggattg aggggttatt agcagctttc ccaaaactca
      241 tgaacactgg aaaacaacat acttttgttg aaacagaaag tgtaagatat gtctaccaac
      301 ctatggagaa actgtacatg gtattgatca ctacaaaaaa cagcaatatc ttagaagatt
      361 tggagactct acggctcttc tcaagggtga tccctgaata ttgccgagcc ttagaagaaa
      421 atgaaatatc tgagcactgt tttgatttga tttttgcttt tgatgaaatt gttgccctgg
      481 gataccggga gaatgttaac ctggcacaga tcagaacttt cacagaaatg gactctcatg
      541 aggagaaagt attcagagca gtcagagaga ctcaagaacg tgaagctaaa gctgaaatgc
      601 ggcgtaaagc aaaggaatta caacaggccc ggagagacgc ggagagacag ggaaagaaag
      661 caccaggatt tgggggattt ggtagttctg cagtgtctgg aggcagcaca gcagccatga
      721 tcacagagac tatcattgaa actgataaac caaaagtggc acccgcacca gccagacctt
      781 caggccccag caaggctttg aaacttggag ctaaaggaaa ggaagtagat aactttgtgg
      841 acaaactgaa atctgaaggc gaaactatta tgtcttctaa catggggaag cgcacctcgg
      901 aagcagccaa agtgcatgct ccacccatta atatggaaag tgtgcatatg aagattgaag
      961 aaaagatcac actgacctgt gggagagatg gaggattaca gaatatggag ttgcatggca
     1021 tgatcatgct taggatctca gatgacaagt ttggccggat tcgtcttcat gtagaaaatg
     1081 aagataagaa aggggtgcag ctgcagaccc atccaaatgt ggataaaaaa ctttttactg
     1141 cagagtctct cattggcttg aaaaacccag agaagtcatt tccagtcaac agcgatgtag
     1201 gggtgctaaa gtggagacta caaacaacag aggaatcttt tattcctttg acaattaatt
     1261 gctggccttc tgaaagtgga aacggctgtg atgtcaacat agaatatgaa ctacaggaag
     1321 ataatttaga gctcaatgat gtggtcatca ccatcccact cccatcgggt gttggtgcac
     1381 ctgtgatcgg tgagatcgat ggggaatatc gacacgacag tcggagaaat accttggagt
     1441 ggtgcctgcc agtgattgat gccaaaaata agagtggcag cctggagttc agcattcctg
     1501 ggcagcccaa tgacttcttc cctgttcaag tttctttcat ctccaaaaag aattactgca
     1561 acatacaggt taccaaagtg acccaggtag atggaaacag ccctgttagg ttttccacag
     1621 agaccacttt cttagtggac aaatatgaaa tcctgtagta ccaagaagag aaagctgaaa
     1681 agcaaggatt tcagattaat aaagaagaag ccaaaagtgg ctgaagagtt tttccaaatt
     1741 tacaagccat tggagatccc ctccccccct tttttctgat acagtgcacg ttctctgcgc
     1801 gcaaggaccc tcaactcaca cccagtgttg tggtgtcaca gagacatttt tgacaaagac
     1861 atgacgctga cataaaggga aaggctgctg atttctttgg cagatcttac tggccagcag
     1921 gaagccatct ctccagggaa tgccccagta aatagctctt ctgccttcac ctaagtctcc
     1981 ctttatttta agccctaaat acaggtatat ttcatacttt gttttacaaa gttttctcta
     2041 tagatttgag tcttttacac tcctttgctt tctgttttct ttcagtacac ttatcacgca
     2101 ctggggtcac ctgtctgtgg gtattgtctt cagcactctg agaagaaggt tatctaaccc
     2161 attcttgaca ttagacaatg ccagtgaact gcttgaggga tgtggagtct aaaagttgaa
     2221 acacaaggtt atcttatttt ctctcccata tccatccatt gctccatttc tttatgaagt
     2281 tgttcccttg taagccgtcc ccttccagtt gcaggcagta ctgttaatcc cattcctatc
     2341 gatattaaag gtagctcgct gagaagcagc ttttatatgg acacaccttt tcaagatgcg
     2401 tagtaagatg gctccatcca tttccacatg taatcatgtc tgctgctaat gctacccaaa
     2461 cttaaagttc tctacatgct gtgggacaat tgagttgaag cattgtcact cagggtgttg
     2521 tagtccactt agagtccttg tgtccacctc cttccccttc ccagatgctc ttcccttcat
     2581 cagtctttcc agcagaactg agtctagtga gtctgtgcca tttctcatta gccctaatga
     2641 agaggcccca tcctcaccac catttggtag cattttgaga ggcaggggat tatattggtg
     2701 tgcagtaagg ggctactcaa atatacccca tctaacctga catttcccac ccgcctctcc
     2761 gcccttgttt ctgaaaacct ttttcttctc agcctttttg gtgtcatcat gtaataattg
     2821 taggagtttc tcggctcatt ttgatccttt accttttcaa tggaggctga atcagccagt
     2881 ccccccaagc actgcactgg gtagggagga tgatcagcgg atgaccagtt gctgcaaggc
     2941 tgcaggcagt agcagtggga agcagtaaat gacagtagat ggcctccact ctctcaggtg
     3001 gctgcagagc agagagcgct cactctaaac acctggcctt ccctggcaag agttttctat
     3061 ccatgaagca gagcagccgc agagggctgt ggctcggacg ctggccaaag aagttcctag
     3121 cctttccctt tcccctaaac tgcatcaggg aagaatcctt atcgctagct tggttttcac
     3181 atgaggtttt ctgaggaagg ggactgggat aagaagtctg tcatgtagta aagtagacaa
     3241 gaaatcttat taatccagtt gtatttcaga gctgtttgtc cctatgattt ttaaagtcaa
     3301 gtttaatttc acaaagactt tttttctgaa attacttttg gggtaatatt taaaatgaga
     3361 gacattttgt aaccctgtaa aatacatagg gaatataaca ttccaatgta cacaacgaag
     3421 gcaaattctt taatcaaata aaagagtatt ataaaatgag aaaaaaaaaa aaaaaaaaaa
     3481 aaaaa
//
