LOCUS       NM_001393716            1369 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus apolipoprotein O-like (Apool), transcript variant
            1, mRNA.
ACCESSION   NM_001393716 XM_006257191
VERSION     NM_001393716.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Guarani,V., McNeill,E.M., Paulo,J.A., Huttlin,E.L., Frohlich,F.,
            Gygi,S.P., Van Vactor,D. and Harper,J.W.
  TITLE     QIL1 is a novel mitochondrial protein required for MICOS complex
            stability and cristae morphology
  JOURNAL   Elife 4, e06265 (2015)
   PUBMED   25997101
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  AUTHORS   Ott,C., Dorsch,E., Fraunholz,M., Straub,S. and Kozjak-Pavlovic,V.
  TITLE     Detailed analysis of the human mitochondrial contact site complex
            indicate a hierarchy of subunits
  JOURNAL   PLoS One 10 (3), e0120213 (2015)
   PUBMED   25781180
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1369)
  AUTHORS   Zerbes,R.M., van der Klei,I.J., Veenhuis,M., Pfanner,N., van der
            Laan,M. and Bohnert,M.
  TITLE     Mitofilin complexes: conserved organizers of mitochondrial membrane
            architecture
  JOURNAL   Biol Chem 393 (11), 1247-1261 (2012)
   PUBMED   23109542
  REMARK    Review article
REFERENCE   4  (bases 1 to 1369)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   5  (bases 1 to 1369)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Mar 5, 2021 this sequence version replaced XM_006257191.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ219134.1, FQ235331.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               JAXUCZ010000021.1  81569960-81570071
            113-217             JAXUCZ010000021.1  81593149-81593253
            218-337             JAXUCZ010000021.1  81604229-81604348
            338-392             JAXUCZ010000021.1  81607958-81608012
            393-491             JAXUCZ010000021.1  81611494-81611592
            492-583             JAXUCZ010000021.1  81614544-81614635
            584-697             JAXUCZ010000021.1  81622413-81622526
            698-806             JAXUCZ010000021.1  81622715-81622823
            807-1369            JAXUCZ010000021.1  81635344-81635906
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq31"
     gene            1..1369
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /note="apolipoprotein O-like"
                     /db_xref="GeneID:317191"
                     /db_xref="RGD:1549725"
     exon            1..112
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..895
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /note="isoform 1 is encoded by transcript variant 1; MICOS
                     complex subunit MIC27"
                     /codon_start=1
                     /product="MICOS complex subunit MIC27 isoform 1"
                     /protein_id="NP_001380645.1"
                     /db_xref="GeneID:317191"
                     /db_xref="RGD:1549725"
                     /translation="MAAFRMRKLTTMPAGLIYASINVHLAKEEEPKKQLVRPEQLPIY
                     TAPPLHSKYVEEQPGYLQRGFTSIRTTTAYYIGWCKGIYLFMKNGVMDTVQIGKDAYV
                     YLKNPPQDFLPKMGVITASGLAGLLSARKGSRFKKIAYPLGLATLGATVCYPAQSVII
                     AKITGKKAYATSHQIFQAIKSMWTQSSEKELLPEPKEETKEGRPDEIHAKTPDLEHSV
                     FLLKELASATKIKSESTSGTTQFIPDPKLMDHGQSHPDDKDMYSTRS"
     exon            113..217
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            218..337
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            338..392
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            393..491
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            492..583
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            584..697
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            698..806
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
     exon            807..1369
                     /gene="Apool"
                     /gene_synonym="RGD1549725"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgtaaaaag gcggggctat ggtgacgcaa ggcatattga acggctttgt ccctctgcgc
       61 tctccgttgg aaaacttgaa ccgagagggt cataggtatg gcggccttta ggatgagaaa
      121 gttgacaacc atgcctgcag gtctgatata tgcatctata aatgtgcatc tggccaaaga
      181 agaggaaccc aaaaagcagc tagtgagacc agaacagctc cccatatata ctgcaccacc
      241 tctccattct aaatatgttg aagaacagcc tggttattta caaaggggat ttacttccat
      301 ccgtactaca actgcttatt atattggctg gtgcaagggc atttatctct ttatgaaaaa
      361 tggggtcatg gatacagtac aaattggaaa agatgcatat gtctatctga agaatcctcc
      421 tcaagatttt cttcccaaaa tgggagtgat tacagcttca ggattggcag gtttgctttc
      481 agcaagaaaa ggttctaggt ttaagaagat tgcttatcca ctgggactgg ccacattagg
      541 agcaactgtt tgctaccctg ctcagtcagt aataattgca aagataactg ggaaaaaggc
      601 atacgctaca agccatcaaa tttttcaagc cattaagtca atgtggacac aaagcagtga
      661 aaaagaatta ctccctgaac caaaggaaga aaccaaggaa ggaaggcctg atgaaatcca
      721 tgccaaaacg cctgacctgg aacattcggt gtttttgcta aaagaacttg cctctgcaac
      781 aaagattaaa tcagaatcca cctcaggtac tacacagttt atacctgacc ccaagctcat
      841 ggaccatggg cagtctcatc cagatgataa agatatgtac agcactagaa gctgaacttg
      901 aagctacata gagaactgca agatgtacta cgttgcaaac aatgatgaaa aaaaaatcac
      961 ataatgaacg ggtaactgac agaatgtgac ttgaaatttt tccatgacat tttcaaataa
     1021 acagtttggt caatgagaca aatggtaaaa acataaatta atgaatacaa cacaaataat
     1081 attaactgat tgatgaggga actgaagtag tagaaatact aggagtatat tctatgactt
     1141 gtaatagaat ttattagaaa gcaaaatgaa gtgaagatat aaatgtcagt aagactgaat
     1201 tctaaaaaca tgcatataaa aatatatgta tgtatatatg tatgtattta tgtatctgct
     1261 tcagttttcc caattattgc cagttaactt agaatggggt ctagaacaat atgtttttca
     1321 cttgactttt ttttagtgct ggaataaaat atccatattt tatggcaca
//
