LOCUS       NM_001009385            1272 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus apolipoprotein N (Apon), mRNA.
ACCESSION   NM_001009385 XM_222299
VERSION     NM_001009385.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088168.1.
            
            On Jan 7, 2005 this sequence version replaced XM_222299.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088168.1, FQ219205.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..1272
                     /gene="Apon"
                     /gene_synonym="RGD1311384"
                     /note="apolipoprotein N"
                     /db_xref="GeneID:304603"
                     /db_xref="RGD:1311384"
     exon            1..44
                     /gene="Apon"
                     /gene_synonym="RGD1311384"
                     /inference="alignment:Splign:2.1.0"
     exon            45..1238
                     /gene="Apon"
                     /gene_synonym="RGD1311384"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..832
                     /gene="Apon"
                     /gene_synonym="RGD1311384"
                     /codon_start=1
                     /product="apolipoprotein N precursor"
                     /protein_id="NP_001009385.1"
                     /db_xref="GeneID:304603"
                     /db_xref="RGD:1311384"
                     /translation="MIQAALFLGCILLSSVTAFPWKTQDGGLPHQPAGTETEPTQLLY
                     SKSPPPTSSTCRNLLSMAPLPPVAPLSESLSLLALRVVLENIGCPAEAYSLQLQLREM
                     GGKDSTETLILESQKHSQEEGIGNNEAILRHLVASPGEIKRVERSVTVPEACTSEQGW
                     VLRELAQLLVEVAEKLPSIDLVREFKASAVNATQQCTMESWEHMNEVGKRLISNPEIE
                     NATIPIEDRVYLISRLTVLLKRVFMSFLRNFFQTYFG"
ORIGIN      
        1 tgctgagaca agaccacctc attcctctgc tgcttttcag acaggactgt cctgccgacc
       61 caccatgatc caggctgcac tgttccttgg ctgtatctta ctgtcctcgg tgaccgcctt
      121 tccatggaag actcaggatg gtggcctgcc ccatcagcca gctggcacag aaactgagcc
      181 tacacaactg ctctacagca agagtcctcc tccgacctcc agtacctgtc ggaacctcct
      241 aagcatggcg cccctgcccc ctgtagctcc tctgtctgag tccttgtccc tcttagcact
      301 gagagttgtc ctggaaaaca tcggctgccc tgctgaggcc tactctctac agcttcagct
      361 cagggaaatg ggaggaaaag acagcacaga aactctgatt ctcgagagtc aaaagcatag
      421 ccaggaggaa ggcattggca ataatgaagc cattctgagg catctggtag catcccctgg
      481 agaaataaag agggtcgagc gctcagttac tgtgcctgag gcatgcacct ctgaacaggg
      541 gtgggtgttg cgtgagttgg cacagctgct ggttgaggtg gctgagaagc tcccttccat
      601 tgacctggta agagagttca aggcttctgc agtcaatgcc acccagcagt gtaccatgga
      661 gtcttgggaa catatgaatg aagtaggcaa gaggctgata agtaacccag aaattgaaaa
      721 tgccacaata cccatagaag atcgcgtata cttgatttca cggctgacag tccttctgaa
      781 gcgcgttttc atgagctttt tgaggaactt ttttcagacc tattttggat agataaggcc
      841 ttccaggcat ggcgtgaact ttctcacaac atgcccttta gtagatacac acacagcaac
      901 tgcccagggt gtgtagctag atgctagcta cattttggga ttgatcgatc gatacattgt
      961 cttcctttga tcctaatgtg tgaagacgct tgactgcaat ctttcagttt ttaaatgcta
     1021 tggtattaca atttccctct ctacctgctt aacattttct aattccccag ctgaattctg
     1081 caccttggtc atgttcatct tcatttgttt tggaatatta aggggaagaa ggtttgtttt
     1141 gttttgttct tgagacagga tctgaccggg taacaatgga actcagagat tcacctgcct
     1201 ttgcctccaa gtgctgagat taaaggtata tgccaccaaa aaaaaaaaaa aaaaaaaaaa
     1261 aaaaaaaaaa aa
//
