LOCUS       NM_001013175            1594 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus apolipoprotein L3 like 1 (Apol3l1), transcript
            variant 2, mRNA.
ACCESSION   NM_001013175 XM_235461
VERSION     NM_001013175.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001013175.2.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ233422.1, BC086447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JAXUCZ010000007.1  111169307-111169517
            212-297             JAXUCZ010000007.1  111173878-111173963
            298-427             JAXUCZ010000007.1  111176688-111176817
            428-1594            JAXUCZ010000007.1  111177140-111178306
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1594
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /note="apolipoprotein L3 like 1"
                     /db_xref="GeneID:315108"
                     /db_xref="RGD:1306480"
     exon            1..211
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /inference="alignment:Splign:2.1.0"
     exon            212..297
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /inference="alignment:Splign:2.1.0"
     CDS             285..1295
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /codon_start=1
                     /product="apolipoprotein L, 3"
                     /protein_id="NP_001013193.1"
                     /db_xref="GeneID:315108"
                     /db_xref="RGD:1306480"
                     /translation="MAARVLRKQFIQDVTEYLQDTVSKKDLQLLLTKDEAWKVFVAEA
                     ELSRDEEASLHEALKLLLKLPTWEDKVRLQKELQDRKKFVEAFPQLKRKLQENIRKLR
                     ALADHLDQVHKGCTISNVVTNSTSAASGVLSILGLALAPVTAGGSLLLSATGLGLGTV
                     ATVTGAATEIVEQTNKWLDEAEARRLLSDTMDTLNTALVLGQKALKLSKKAYDVIKQL
                     KSLGQHIRAIRVARANPRLLADAKRLMTSGRLSAPRASQVQNAFEGTALAMTKKARIR
                     GVATAGVFLAMDVYFLVRDSMDLCDGAKSESGNKLRALAQELEEKLKEVAQIYKSLLV
                     PY"
     exon            298..427
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /inference="alignment:Splign:2.1.0"
     exon            428..1594
                     /gene="Apol3l1"
                     /gene_synonym="Apol3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttcacttt cggtgctgtg cataaccagc aggcagctgc tccttactgg gatcctgatg
       61 ttcagctagt gagtggatac acacgggaag gacggctgtg ttgccttccc cctcacccac
      121 aggaaggatt tccagtaagt tggggacctc ttgagagtcc cgacctgctt gctcatccac
      181 ccagcagctc ttgaagagtg agataatcaa gcttggactc acagaaagct gtgaggaaga
      241 cttttgagag atcccacacc aggaagcaag gacccttcgc cctcatggcc gccagagtct
      301 tgaggaaaca attcattcag gatgtcactg agtatctaca ggacacggtc agcaaaaaag
      361 acctgcagct cctgttgacc aaagacgaag cctggaaagt gttcgtggca gaggctgaat
      421 tgtccagaga tgaggaagct tcactgcatg aggctctgaa gctgctcctg aaactcccca
      481 cctgggagga caaagtcaga cttcaaaagg aactgcagga caggaagaag tttgtggaag
      541 cttttcctca gttgaaaagg aagctgcagg aaaacatcag gaagctccga gctctggccg
      601 accatcttga ccaggtgcac aagggctgca ccatctccaa tgtggtaacc aactccacca
      661 gcgctgcctc aggtgtcctg agcatcctgg gtctggctct ggcacccgtg acagcagggg
      721 gtagtctact gctctctgca actggcctgg ggctggggac agtagccact gtgaccggag
      781 ctgccactga gattgtggag caaacaaaca agtggttgga tgaggctgag gccaggcgcc
      841 tgttgtcaga caccatggac actctaaaca cagctcttgt cctgggtcag aaagcactca
      901 aacttagtaa aaaagcctat gatgtcatca aacaattgaa aagcttggga cagcacattc
      961 gtgccattag ggtagccaga gccaaccctc gcttacttgc agatgccaag cgcctcatga
     1021 cttctggaag actctctgcc ccacgtgcta gtcaggtgca gaacgccttt gaaggcactg
     1081 ctctagcaat gaccaaaaaa gccagaatca ggggtgtagc cactgcaggt gtcttccttg
     1141 ccatggatgt gtatttcctt gtgagggact cgatggattt atgtgatggc gcaaaatcag
     1201 agtcaggcaa taaactgcgg gccctggctc aggagctcga ggagaagttg aaagaggttg
     1261 ctcagatcta caagagcctc ctggtgcctt actgatggct gccccaaaga acacagaggt
     1321 cggtggagat gatctgaaca gataggaggc actgaggcaa ttgttagagg gggaatgaga
     1381 tgatcagctt tcactgtctt cttgacacaa tctagaatcg tgtggggaga gagtctcagt
     1441 gtgcgatcct ctagctcaat gtcctgtggg cctgcctgag agagactttt ctaagtgact
     1501 ctaattaatg tgtgtgtcaa ttcctccact gtgggtggca gtgttctcta gatatggatt
     1561 ctgaactgta caataaaaag cagactgaac acca
//
