LOCUS       XM_039080557            2421 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus apolipoprotein L, 2 (Apol2),
            transcript variant X3, mRNA.
ACCESSION   XM_039080557
VERSION     XM_039080557.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2421
                     /gene="Apol2"
                     /note="apolipoprotein L, 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 long SRA read, 8 Proteins"
                     /db_xref="GeneID:315111"
                     /db_xref="RGD:1309591"
     CDS             317..1471
                     /gene="Apol2"
                     /codon_start=1
                     /product="apolipoprotein L2 isoform X2"
                     /protein_id="XP_038936485.1"
                     /db_xref="GeneID:315111"
                     /db_xref="RGD:1309591"
                     /translation="MECLGVPSVHAELGRIGNGSEVCFLLLAAWGRDPAFDTMDPSDG
                     EDSPASRTFIEEATEYLQHTSGRDDLKLLLTEDGAWEAFVAEAELSRADADTLRDALN
                     ALTANMAEEDQNRLQHDLQDVERFIDVFPQVKLELERHVRKLRTLADKVDKVHRDCTI
                     SKVVAGSTSTVSGVLTLLGLALVPVTAGVSLVLLATGMGLGAAAAVTSVSTGIVDYTS
                     KSSAQTEASHLVSTSMVKVKMAAEAVVYSGPQVFSLSESCCRVLRCIEQSVYAIKLTK
                     ANPALAASVKRLMTVGSISAQSDKHVKKAFKGTALAMSRRTRIMGIATAGVSLIGDVI
                     SLVKESKNLYKGAKAKSAEELRQQARELEEKLEVLVQIYDGLQSGSTQSS"
     polyA_site      2421
                     /gene="Apol2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcaaggcttt actgaggggc caaagaattg agactggggg ctttctttgc atatgaactt
       61 ctctgcctgg gggtggggag tgagtagtca ccactaagac aagaataaca gagcaagaag
      121 attttatctg cttatgaaag gacagaatat tgatgaacct tctgagaaga cattgagaaa
      181 ctctcctcct tgttgctctt gcaggaactg gggttcttgg tcctggcggc tggtaggtgc
      241 cttcccagag ctccagagag gtggggagag ccagacaagt cttggttaag ttaaccctgt
      301 ggtagttaac cctgtaatgg agtgcctcgg tgtaccaagt gtgcatgcag agctgggcag
      361 gattggaaat ggcagtgaag tttgttttct cctccttgca gcttggggca gagatcctgc
      421 atttgacacc atggaccctt cagatggcga ggactctcca gcaagcagaa ccttcattga
      481 ggaagccact gagtatctgc agcacacgtc gggcagggac gacctgaagc tgctgctgac
      541 tgaagatgga gcctgggagg cctttgtggc tgaggctgag ttgtccagag ctgacgcaga
      601 cactttacgt gatgccctca atgcgctcac agcaaacatg gctgaggaag accagaacag
      661 gctccaacat gacctgcagg atgtggagag gttcatagat gtgtttcccc aggtgaaact
      721 ggagctggag agacacgtca ggaagcttcg cacccttgca gacaaggttg acaaggttca
      781 cagggactgc accatttcca aggtggtagc tggctctacc agtactgtgt ctggagtcct
      841 gaccctcctt ggcctcgctc tggtacctgt gacagctggg gtcagtctgg tgctcttggc
      901 aacagggatg ggtctgggag cagcagcggc tgtgactagt gtctccacgg gtatcgtgga
      961 ctacacaagt aagtcatcag cccaaacaga agccagccac ctggtgtcaa ccagcatggt
     1021 taaagtgaag atggctgcag aggccgtggt ttattcagga ccccaagtct tttccttatc
     1081 tgagagttgc tgccgagtcc tacggtgcat tgagcagagc gtctatgcca tcaagcttac
     1141 caaagccaac cctgccttag cagctagtgt caagcgcctc atgaccgtgg gaagcatttc
     1201 tgcccaaagc gataagcatg tgaagaaagc ctttaaaggc actgccctgg caatgagcag
     1261 aagaacccgg atcatgggca tagccaccgc aggtgtgtcc ctcattgggg atgtgatcag
     1321 cctggtgaaa gagtccaaga atttgtacaa gggcgcaaaa gcaaagtctg ccgaggagtt
     1381 gaggcagcag gctcgggagc tggaggagaa attggaggtg cttgtccaga tctatgacgg
     1441 tttgcagtca ggctcaactc agtcgtccta gatgacagtg gtggtggtga tgagtggggg
     1501 tgatgacaga gtgggcacaa gagttgtcaa gggaccaggg tgctcttgag gaccaatgaa
     1561 attctattga ctctctctag ggtgtgctgg gatggtgatt gatttagggc tggggagtga
     1621 cccagattgg actgacaggt caagagattt tgtagcatgt ccaggtcggc cagcctgtgg
     1681 tcatgagaca taccttttca gaggcacagc ttcctcagga gacgggggag ggggagattg
     1741 ggggagggtg atggacaaga ccacctctct gctcatcttc ctctgttacc ctgtgttcta
     1801 tgtagacttt agctcaaaga atattagcca actactctag gaaaacgggg catcccagac
     1861 tgaaggtccc aaagtcatag gaaaggaaaa caaggcatta gagcagggtt taggatgtgg
     1921 gattggagag catccaccct tatcctaacc acctaacagc tagatccaca gccccttctg
     1981 tgaggcaatg tactcggtcc aggggtagag cacagcctcg taggaggccc agaggttatt
     2041 ctgctcatag atcagcacca gaggaatcag gaggttaaca ccagatttat tccttcaaag
     2101 gaagggatgt acaacctgtt atctgcccag aaggttggga gcagatatgg ttaatagttt
     2161 ggtgaccctt tatgctattc tgtgtctaag accacaccag atccttcctc tggaccttta
     2221 ttgtgaactt gtccacctat agaacccatc tttatgaaag aggtcatgtg tacagaaaga
     2281 gtttgatgta gtcatgtcgt gagctttatt gtgcacacag attgagttaa ttattaccaa
     2341 gaaagtgttg cccaacttgt ggtatgcttc aatatgccta aaataaacta cctggggcaa
     2401 gatcccagca gtttgaacca a
//
