LOCUS       XM_006241949            2648 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus apolipoprotein L 11a (Apol11a),
            transcript variant X1, mRNA.
ACCESSION   XM_006241949
VERSION     XM_006241949.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006241949.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006241949.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2648
                     /gene="Apol11a"
                     /note="apolipoprotein L 11a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:300060"
                     /db_xref="RGD:1309798"
     CDS             34..1422
                     /gene="Apol11a"
                     /codon_start=1
                     /product="apolipoprotein L3-like isoform X1"
                     /protein_id="XP_006242011.1"
                     /db_xref="GeneID:300060"
                     /db_xref="RGD:1309798"
                     /translation="MSCRWNYRRLSHLTWVLGTELWSSAKHGVLLLNTETLLSMAEEQ
                     GGPGRHRAGCVLRSHMPELFLSLSCTGYIMPRACAWLSLRRAAGDWIHTAKDSRDTSK
                     LAYRKIPCPDTCRTVRSPMAHALDRAAVSKVARRSVEELTDFLTEVLCKRDLKSLITE
                     DGVWKGFVEAAELSSEEEAALYDALKEHLQQHPTDENDGPQREQEKERFLRVFPQLKK
                     KLEDHIKKLRDLADHLDQVHHGCTISNVVSSSVSTVSGILGLVLLPFTGGASLILSAT
                     AVGLGVTASVNGLVTNIVEESIKLSDESEASRLVGASMDVLGEILKITPKITIKLYNT
                     GKELVEAFKTLRDQIRAIRRARSISQGAAAARSLTSTGRGSVQSAREMGAAFTGSPLS
                     TTRGARFGAAGVTSFFLAWDVYHLVADSMDLYDGAKTESAGALRELCHKLDDKVKIFE
                     QIYKALQSDLPQ"
ORIGIN      
        1 actctgtgtc tggtagccag aagaggccat tgtatgtcct gccgttggaa ttacaggagg
       61 ctgagtcacc tgacatgggt actgggaact gaactttggt cgtctgcaaa gcatggagtg
      121 ctgctcttaa acacagagac gctgctgtcc atggccgagg agcagggagg cccaggaagg
      181 caccgggctg ggtgtgtctt gaggagccac atgccagaac tttttctttc actttcatgc
      241 actggctata taatgcccag agcttgtgcc tggttgtctc tcagacgggc agctggtgac
      301 tggatccata cagcgaagga cagcagggac acatccaaac ttgcctacag gaaaattcct
      361 tgcccagaca cctgcaggac agtaagaagt ccaatggctc atgctctgga ccgagcagca
      421 gtcagcaaag tggcacgccg cagtgttgaa gaactcactg attttctcac agaagtactc
      481 tgcaaaagag acctgaagag cctgataact gaagatggag tctggaaggg atttgtggaa
      541 gcagcagagt tgtcaagtga ggaggaagct gcgctgtatg atgctctgaa agagcattta
      601 caacagcatc ccacagatga aaatgacggc cctcaaaggg aacaggagaa agagaggttt
      661 ctacgagtgt ttcctcagct gaaaaagaaa cttgaggacc atatcaagaa gctccgagac
      721 ctggctgacc atcttgacca ggttcaccat ggctgtacca tctccaatgt ggtgtctagc
      781 tctgttagca ctgtctctgg aatccttggt ttggttctgt taccctttac aggaggggcc
      841 agtctgatac tctcagcaac cgccgtgggg ttgggagtga cagcatctgt gaatggtctt
      901 gtgactaaca ttgtagaaga atcaatcaaa ctgtcagatg aatctgaagc cagtcgcctg
      961 gttggagcca gcatggatgt acttggggag attctaaaga tcacacctaa gatcacaatc
     1021 aagctttata atacaggcaa ggagttagtc gaggccttca aaaccctcag ggatcagatc
     1081 cgagccatca ggagagccag gtccatctct cagggtgcag cagctgccag gagcctcacc
     1141 tccactggaa gaggctctgt ccaaagtgct agagagatgg gggctgcctt cacgggctct
     1201 cctctctcaa cgaccagagg agccaggttt ggagcagcag gggttacaag ctttttcctt
     1261 gcatgggatg tgtatcacct tgtggcagat tccatggatc tgtatgatgg ggcaaaaaca
     1321 gagtcagctg gggcactgcg ggaactgtgt cacaagctgg atgacaaggt gaaaatattt
     1381 gagcagatat acaaggcact gcagtcagac ctgcctcagt gacccctcct ccaagcagct
     1441 aagtgttcag gggacagggg tggggacagt ggaggtatgc tgtaacaagg ggaacagcca
     1501 atgttgaggt gatggaacag attatggagg cctttgaatt tctctgggtg aacagagcta
     1561 ggtcaatgca ggtggccaga gatgccagga gaaggggaaa ctggagtcta aaagggtgac
     1621 cagagtgacc tagagtgtgg gtaatgggat tgtaacatgg tgggtatggt cagggagggc
     1681 tgtacggtac aagtaatgag aagtcaggaa gcctggggag cagaaaatgg gggagagcca
     1741 gagtgagagt caaggcagat ttacataaga ctttacacag tggtaggaat ggagatgaag
     1801 ccaacacttt tgtgacagga ggttgggcat gtggctctca gctccttctc aatctgtgga
     1861 ggctcactgg acacggtggt gtctcagatc aatgggctct tgtcttcttg ccttctatag
     1921 ccttgtgttc aataaatgtc aactggctgg tctggaatat ggcgtaaaag cagtcacttg
     1981 caacctcggg cccacaggta ttggcagatt ccggaactct gaggtgacaa acattggcct
     2041 cacttcctag tgttgtcaca aagcgtgctg agcagtttcc tagaagatct ttttaatgtc
     2101 caagtgggat gggttctgct tctgtccctg aatttagaaa tagagccagt acagtatctt
     2161 aaaccctgcc atcctgactg ttccagccca ttcctcactc tgattattag gacccatcat
     2221 ggtggctcag caagatgagc tgtggctctg tggacattta catggtcctg tcatagtagg
     2281 cctgtgactc agtggacatt tacacggtcc tacacgtgtg tttttctctg ccaagctgaa
     2341 gtcatgcgat gttaagaaga gaaaaatcaa gagaaagaac tattaaaaat atagcaacaa
     2401 atatctctct tcgagaaaac gtggtctcca gcatctcata tcttaggctc tgtctcggct
     2461 cagtctctgg ttgtggagtg aaggccaatg cctcttcctc agccagtctc ctcatctgaa
     2521 aaaccacagg acggcccctt gttacacttc gtaatcacac actgatttga aaaatgggga
     2581 aagatttgta ttccagggaa tgattggaag actccaatca aatggcgaac taaatgtgtt
     2641 gaaactgt
//
