LOCUS       NM_001409538            1215 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Rattus norvegicus apolipoprotein F (Apof), transcript variant 1,
            mRNA.
ACCESSION   NM_001409538
VERSION     NM_001409538.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Kumar,A., Gangadharan,B., Cobbold,J., Thursz,M. and Zitzmann,N.
  TITLE     Absolute quantitation of disease protein biomarkers in a single
            LC-MS acquisition using apolipoprotein F as an example
  JOURNAL   Sci Rep 7 (1), 12072 (2017)
   PUBMED   28935895
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Lagor,W.R., Fields,D.W., Khetarpal,S.A., Kumaravel,A., Lin,W.,
            Weintraub,N., Wu,K., Hamm-Alvarez,S.F., Drazul-Schrader,D., de la
            Llera-Moya,M., Rothblat,G.H. and Rader,D.J.
  TITLE     The effects of apolipoprotein F deficiency on high density
            lipoprotein cholesterol metabolism in mice
  JOURNAL   PLoS One 7 (2), e31616 (2012)
   PUBMED   22363685
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CM042121.2.
            
            Transcript Variant: This variant (1) is the protein coding allele
            of rat strain SHR/Utx.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088170.1, CO557841.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            polymorphic pseudogene :: based on alignments, homology
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                CM042121.2         5315287-5315376
            91-1215             CM042121.2         5315617-5316741
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="SHR/Utx RGD_8142385"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..1215
                     /gene="Apof"
                     /note="apolipoprotein F"
                     /db_xref="GeneID:500761"
                     /db_xref="RGD:1560713"
     exon            1..90
                     /gene="Apof"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1031
                     /gene="Apof"
                     /note="apo-F; liver regeneration-related protein LRRG151"
                     /codon_start=1
                     /product="apolipoprotein F precursor"
                     /protein_id="NP_001396467.1"
                     /db_xref="GeneID:500761"
                     /db_xref="RGD:1560713"
                     /translation="MAGLYGCSAPDMHSLRLNSTSIQLLCYLLLCPVGAISHREPKGV
                     STMLPPSQLGSQPPTSDPLSCQALLPRSLPGFTHMPPLSKFLVGLALRNALEEAGCWA
                     DVWALQLQLYRFGGVEATQALIRHLQELQKGGRADWKVSVNALSSALQLLAWEQAGPK
                     RVKRSLSNMGCENEQEQRVHNVVELLPAVGTYYNLGTALYYAIKNCTDKAKERGRDGA
                     IDLGYDLLMTMVGMSGGPTGAVITAALKPALKAGVQRLIRYYHDEEGVTTSQPETRKD
                     APTYRDDVEETTMSNLVSEVESTTSNWGRPLLKNYVFLAYKR"
     exon            91..1215
                     /gene="Apof"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggacagag agcagggcag aacaggagga ggattgagga cctaacaaag ctacccgggg
       61 actcttactt ctcaatggct ggactatatg ggtgctcagc tcctgacatg cacagtctca
      121 gactcaattc gacatcaatt cagctgcttt gctacctcct gctgtgtcct gtgggtgcca
      181 tttcacacag agagccgaag ggtgtctcta cgatgctccc tccctcgcag ttgggatcac
      241 agccgcctac ctcagacccg ttgtcctgcc aggcactgct cccaaggtcc ctgcctggct
      301 tcactcacat gcctcctctc tccaaattcc tggtaggcct ggctctaagg aatgctctgg
      361 aggaagctgg ctgctgggct gatgtctggg ctcttcagct tcagctttac cgattcggag
      421 gtgtggaggc tacacaggcc ctcatccgcc atcttcaaga gctccagaaa ggtggacgtg
      481 cagactggaa agtgtccgtg aatgctctgt cctctgccct acagctctta gcctgggagc
      541 aggcaggtcc aaagagggtc aaacgttcgc tttctaacat gggctgtgag aatgagcagg
      601 aacagagagt gcacaatgtg gttgagctgc tgccagcagt gggcacctac tacaacctag
      661 gcacagcctt gtattacgcc attaagaact gcactgacaa ggccaaggaa cgaggccgag
      721 atggggccat agacctgggt tatgatcttt tgatgaccat ggtgggtatg tcaggggggc
      781 caactggtgc agtgatcact gctgctctta agccagcgct gaaggctggg gttcagcggc
      841 tgatccgata ttatcatgac gaggaagggg tgaccacctc tcagccagag acccggaagg
      901 atgcccccac atatagagat gacgtggaag aaacaaccat gtccaatttg gtgtcagaag
      961 ttgaaagtac aacttctaac tgggggaggc ctttattaaa gaactatgtt tttttggcat
     1021 acaagagata gtaacagaac aacaaataag tggaaaattc tgataagagg aggagtgtgg
     1081 atggatgggt ggatggtttg gggtgctgtc accacttgcc agtaatttcc ttcttgaaac
     1141 ttagctttta cactctaatg tggccaactt tcgcctgaac aagtggttat agaaattaaa
     1201 aagtgatatc atgaa
//
