LOCUS       NM_001395126            3711 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus apolipoprotein B receptor (Apobr), mRNA.
ACCESSION   NM_001395126 XM_006230319
VERSION     NM_001395126.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 3711)
  AUTHORS   Brown,M.L., Yui,K., Smith,J.D., LeBoeuf,R.C., Weng,W., Umeda,P.K.,
            Li,R., Song,R., Gianturco,S.H. and Bradley,W.A.
  TITLE     The murine macrophage apoB-48 receptor gene (Apob-48r): homology to
            the human receptor
  JOURNAL   J Lipid Res 43 (8), 1181-1191 (2002)
   PUBMED   12177162
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 4, 2021 this sequence version replaced XM_006230319.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.1389.1,
                                           SRR26643295.4130.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                JAXUCZ010000001.1  190599595-190599686
            93-2612             JAXUCZ010000001.1  190599985-190602504
            2613-2878           JAXUCZ010000001.1  190602590-190602855
            2879-3711           JAXUCZ010000001.1  190602950-190603782
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..3711
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /note="apolipoprotein B receptor"
                     /db_xref="GeneID:499264"
                     /db_xref="RGD:1565169"
     exon            1..92
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..2948
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /note="apolipoprotein B-100 receptor; apolipoprotein B48
                     receptor"
                     /codon_start=1
                     /product="apolipoprotein B receptor"
                     /protein_id="NP_001382055.1"
                     /db_xref="GeneID:499264"
                     /db_xref="RGD:1565169"
                     /translation="MDFLRLRLPGLHQALRGALDSFSAFVSYLIGDTVPTVERQPQAA
                     EELGEVTEGKVVGEETQEVLDGLRSGQSERVGAPEESIRCQEGSLAGEQTWEWRADSS
                     TRPRAERQDTGSRKAAEGARGQEPSVSLKPEAERGTLRDRSSDIAQELWEHGEEEASN
                     GELLRTCKQKEEEEVVKAEVVKATEPGMARGVESQPTWHSKPEESAGTEGQNVTDDRK
                     EIDCVAKDVVAEVEWFGAKGADKEEERMVPTRNGQSARAQGTQCPGAESEDWAMLSRE
                     AWTVSGREEADNLGIQEAEYGSDPGDNIPEATGRVWVLEEAGKGDQQDEVDEKREAEA
                     RLLIQTWEAERTGEMTEGQIARSGAVGDQETGDSFEDEERQDLATRDNGVSLEEEVQA
                     KESSREKRSHWATEAILVSDTGVKDEPDREDSPGAKTEELFVGEKSEAVQMTPEESRV
                     KVAEGQELELMRCSQTLTKQHEEGQEGQEETSRAPDLSPEGLLSLKEYPRCVEFADPE
                     LEAWGNLNKDEDSRNSQEVKTHAEAGKDQSATEQTVEVQAEGGQEAQWSEVFGSGGEE
                     ELTCIAFNPELEGSQGTEAGTGPSVEESKPTENEAAEEEEAVVPWEADGACRERRLEE
                     VAPSLQDREDTQTGYLADEIIVGTRTVDAEEGPRWEGGLAPDMELGKAWYSEGREEAG
                     RDTELEEATEKQSGQEVGLEDSAEEKVSGYDTQETDGMGEGEQVQMETSVMAEGIRGA
                     DGVTLGSQAERAEGSKTTMETEQLLRDQILLKEEAGGGQSREPKGHISEGEIQKLQEE
                     EDARIGAQRTEIQETYPGLDDSSGQEGQQTLQIPTVAMPGPSESAEATAGAPGDVHSN
                     WNEAPLPGSRLDVSVPRSRVLLSRSSSRRRSRPSFRRISVPEPQWDPPSPQPQEELPF
                     PEQSPPRLEETPELSATKPEGTPVPVRRKVLGQGFGFAHPGMMQELQARLSQPKPQ"
     exon            93..2612
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /inference="alignment:Splign:2.1.0"
     exon            2613..2878
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /inference="alignment:Splign:2.1.0"
     exon            2879..3711
                     /gene="Apobr"
                     /gene_synonym="Apob48r; RGD1565169"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attgtgagct ttctggaccc acagagacct gcaggatgga ttttctccgg cttcgtctcc
       61 ctgggctaca tcaggctttg aggggagcac tggattcctt cagtgctttt gtgtcctacc
      121 tcattggaga cacagtcccc accgtagaga ggcagccaca ggcagctgag gaactggggg
      181 aggtgactga agggaaggtt gtaggggagg aaacccagga ggtactggat ggacttagaa
      241 gtggccagag tgagagggta ggagcacctg aagagtccat aagatgccaa gaaggaagtt
      301 tagctggtga acagacctgg gagtggagag cagatagttc cacaaggccc cgagcagaaa
      361 ggcaggacac tgggtccagg aaggcagctg agggcgccag gggccaggag ccaagtgtct
      421 cgttgaagcc tgaggcagag cgtggaactc tcagagacag gagcagtgat atagcccagg
      481 agctctggga gcatggtgag gaggaagcga gcaatgggga gctgctgaga acctgtaaac
      541 agaaggaaga agaggaggtg gtcaaagcag aggtggtcaa agcaacagag ccagggatgg
      601 ccagaggggt ggagtcacag ccaacctggc acagcaagcc tgaggagagt gctggcactg
      661 aggggcagaa tgtgacagat gaccgcaaag agatagactg tgtggccaaa gacgtagttg
      721 cagaagtcga gtggtttggt gccaaagggg ctgacaagga agaagagagg atggttccaa
      781 ctaggaatgg ccaaagtgca agggcacagg ggacacaatg cccaggggca gagtctgagg
      841 actgggccat gttgagtaga gaggcctgga cagtctcagg tagggaggag gctgataacc
      901 taggaattca ggaagcagaa tatgggtcag acccaggaga caacatccca gaagctactg
      961 ggagagtctg ggtcctagaa gaggctggca agggagacca gcaggatgag gttgacgaga
     1021 agagagaggc tgaagctagg cttctgatcc agacctggga ggccgagaga accggagaga
     1081 tgactgaagg ccagatagcc agaagcgggg ctgtgggcga ccaggagaca ggggacagct
     1141 ttgaggatga ggagaggcaa gacttagcca ccagggataa tggagtgagt ctggaagagg
     1201 aggtgcaagc aaaagaatcc tccagggaga aaaggagcca ctgggccaca gaggctatac
     1261 tagtctcaga cacgggggtt aaagatgaac ctgacaggga agactctcca ggagccaaga
     1321 ctgaggagtt gtttgtggga gagaagagtg aagcagttca gatgacacca gaggaatcga
     1381 gagtaaaggt cgctgaagga caggagcttg agctgatgag atgttcccag accttgacta
     1441 aacaacacga ggaaggacag gagggtcagg aagagaccag tagagctcca gacctgagcc
     1501 cagaggggtt gctaagcttg aaggaatatc ctaggtgtgt ggagtttgca gatcctgagc
     1561 tagaagcctg gggaaacttg aacaaggatg aggacagcag aaatagccag gaggtaaaaa
     1621 cacatgctga agcaggcaag gaccagtctg caaccgagca gactgtggag gtccaggctg
     1681 aaggaggcca ggaggcccaa tggtcagagg tctttgggtc aggaggagag gaggaactga
     1741 cctgcatagc atttaaccct gagctggagg gaagccaagg aacagaggca gggacaggac
     1801 cgtcagtgga ggaatccaag cccacagaaa acgaggctgc tgaggaggag gaggctgtag
     1861 tgccttggga ggcagacgga gcttgcaggg agaggaggct ggaggaggtg gctccaagcc
     1921 tgcaagacag ggaagataca cagaccggtt acttggctga tgagattatt gtgggtacca
     1981 ggactgtgga cgccgaggaa gggccaagat gggaaggtgg gttggctcca gacatggagc
     2041 tcggaaaagc ctggtattcc gagggcagag aggaggctgg gagagacaca gagctggagg
     2101 aggctacgga gaagcaaagt ggacaggaag ttggtttgga ggactcagca gaggagaagg
     2161 tgtctggcta tgacacccaa gaaacggatg ggatgggaga gggggagcag gtacagatgg
     2221 agacatctgt aatggcagaa ggaataaggg gggcagatgg tgtgacttta ggttcccagg
     2281 cagagagagc agaggggtcc aaaaccacca tggagactga gcagctccta agagatcaga
     2341 tactgttgaa agaagaggct gggggagggc agtcccgaga gccgaagggc cacatctcag
     2401 agggagagat ccaaaagcta caagaggagg aggacgccag gatcggagca cagaggacag
     2461 agatccagga gacctatcca ggtctggacg actcttcagg ccaggagggg cagcagacac
     2521 tccaaatccc cacagtagct atgcctggcc cctcagaatc agctgaggcc acagcaggcg
     2581 ccccagggga cgttcacagc aactggaacg aggccccgct ccctgggtcc cgcctggatg
     2641 tctctgtccc tcggagtcgt gtgctcctct cacgaagttc ctcacggcgg cgctcaaggc
     2701 cttctttccg acgaatctct gttcctgagc cacagtggga ccctcccagt ccccaacccc
     2761 aggaagagct gccatttcct gagcagtccc ctcctcggct agaggaaact ccagagctaa
     2821 gtgccacaaa gcccgagggg actccagtgc cagtcagaag aaaagtgctg ggacaagggt
     2881 ttggcttcgc tcatcctggc atgatgcagg agctgcaagc ccgactgagc cagccaaagc
     2941 cacagtgaca ggacctagag tcctagtgag agaggcctct taagagaggg tctgaaggct
     3001 cttctggacc ctggttactc ttgactcctt cagccacaga aacctatctt tttaactttc
     3061 tggacttcag ctaaaccaga ttatttatga agaccttgaa tgcaaggagt ctgattaaat
     3121 gagtggggac ctgctccacc agcatctatc atggttcctt tcctggtcac ccttcccatc
     3181 tgtctcatct actcggaaga ctacctggaa gacagggttt gggagaccat tttcccctaa
     3241 atttcccctg tatgatcacc tgcccccaat tacccatcat ggtggaaccc cacagagagc
     3301 tgtgtaagat agcacacctc tggggtgcaa gccagcccaa aggaaagagg gacactgctt
     3361 cgagtcaatg gccacggaca acagaccagt tgctttgagt ttccaaaaat gacagctcag
     3421 tatcacaact ctgcaggtca ctatgctaac ctccacgcca gagttgggga acgttgccca
     3481 ggaactccaa gaatgtagga gtagaaaggg gctctgagtg gcaggaagct tcccctcctc
     3541 cctgactcct tcccaagctg ttctgatctt tgggtgtcag gccttcctgt gaaaacacgt
     3601 ggaaacacaa actgggctgg acagctttat taggctccca gcatggtggc ccaactcaag
     3661 gacgaaacaa taaataaacc atttcctaaa aataaataaa tatccaagaa a
//
