LOCUS       NM_001398965            2203 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus adipocyte plasma membrane associated protein
            (Apmap), transcript variant 1, mRNA.
ACCESSION   NM_001398965 XM_006235215
VERSION     NM_001398965.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Ilhan,A., Gartner,W., Nabokikh,A., Daneva,T., Majdic,O., Cohen,G.,
            Bohmig,G.A., Base,W., Horl,W.H. and Wagner,L.
  TITLE     Localization and characterization of the novel protein encoded by
            C20orf3
  JOURNAL   Biochem J 414 (3), 485-495 (2008)
   PUBMED   18513186
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 29, 2021 this sequence version replaced XM_006235215.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1221238.1,
                                           SRR26360181.3289127.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760476,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000003.1  159897547-159897726 c
            181-297             JAXUCZ010000003.1  159888739-159888855 c
            298-413             JAXUCZ010000003.1  159882890-159883005 c
            414-506             JAXUCZ010000003.1  159876516-159876608 c
            507-623             JAXUCZ010000003.1  159875160-159875276 c
            624-798             JAXUCZ010000003.1  159873867-159874041 c
            799-933             JAXUCZ010000003.1  159872666-159872800 c
            934-1126            JAXUCZ010000003.1  159872075-159872267 c
            1127-2203           JAXUCZ010000003.1  159869451-159870527 c
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..2203
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /note="adipocyte plasma membrane associated protein"
                     /db_xref="GeneID:366227"
                     /db_xref="RGD:1308874"
     exon            1..180
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1336
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="adipocyte plasma membrane-associated protein
                     isoform 1"
                     /protein_id="NP_001385894.1"
                     /db_xref="GeneID:366227"
                     /db_xref="RGD:1308874"
                     /translation="MSEADGLRQRRPLRPQVITDDGQVPEVKEGSSFSGRVFRMTFLM
                     LAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNGPE
                     SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNG
                     TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSS
                     KWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETA
                     MARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFL
                     SDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHE
                     HDGYLYLGSFRSPFICRLSLQSI"
     exon            181..297
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            298..413
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            414..506
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            507..623
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            624..798
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            799..933
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1126
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..2203
                     /gene="Apmap"
                     /gene_synonym="Ab2-305; RGD1308874"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcatttcct cgcgccaagg gacggttctg aaaccctcgc gcttctctgt gctggtggag
       61 tcagtggaaa cagtggaggg gcggcagaat gagcgaggca gacgggctga ggcagcgccg
      121 gccactgcgg ccgcaggtca tcacggacga tggccaggtc ccggaggtca aggagggcag
      181 ttcctttagt ggcagagttt tcagaatgac cttcttgatg ctggctgtgt cccttgccat
      241 tcccctgctt ggagccatga tgctgttgga gtcccccata gatcctcaga gtttcagctt
      301 caaagaaccc cctttcatgt ttggtgttct gcaaccaaat acgaagttgc gacaagcaga
      361 aaggctattt gaaaaccaac ttaacggacc agaatccata gtaaatattg gggatgtgct
      421 gtttactggc acagccgatg gccgagttgt aaaactggag aatggagaaa tagagaccat
      481 cgcccggttt ggttcgggcc cttgcaaaac ccgagatgat gaacctacct gtgggagacc
      541 cctgggcatc cgggtaggac ccaacgggac tctttttgtg gttgatgcat acaagggact
      601 gttcgaagtg aatcctcaga aacgttcagt gaaactgctg ctatcctctg agactcccat
      661 tgagggcaag aaaatgtcct ttgtgaatga tctcactatt actcgggatg ggagaaagat
      721 ttatttcacg gattctagca gcaagtggca gagacgagac tacctgcttc tggtgatgga
      781 gggcactgat gatgggcgct tgttggagta tgataccgtg acaaaagaag tgaaggtttt
      841 gttggaccag ttgcagttcc ctaatggagt tcagctgtct cctgaggaag actttgtcct
      901 ggtggcagag acagctatgg ccaggatacg aagagtctat gtgtctggcc tgatgaaagg
      961 aggggcagac atgtttgtgg agaacatgcc tggatttcct gacaatatcc ggcccagcag
     1021 ctctggcggg tactgggttg ctgctgcaac cattcgtgct aaccctgggt tttccatgtt
     1081 ggatttctta tctgacaagc cttttatcaa gagaatgatt tttaagctgt tcagtcagga
     1141 gacagtgatg aagtttgtac cacgatatag cctggtcctg gaagtcagtg acagtggtgc
     1201 cttccggaga agcctgcatg atcctgatgg acaggtggtc acctatgtga gtgaggcaca
     1261 tgaacacgat ggatacctgt acctgggctc cttcagatct cccttcatct gcagactcag
     1321 cctccagtca atttagccag cccagcagct gcccacactg tgcatgccag gaatcatcac
     1381 actcagtcat ataggtctgg aaggagccat ggacatagct ctcttctgtg tttctgctag
     1441 tccttggaag tgtgcaagta gctgctgcaa cctggagaac atatgggcct tacccatact
     1501 ttctcccaag aggtgtctct cacctggact caatgtcact tttagaggga aatagtgtat
     1561 ctgctatggg gaagacaaat catggaaagc catttctctt taaaaaatat gctaagtaca
     1621 aggattcttt agtacttgga aagtttaata cacttgtcac agagctcagg gtttgatgat
     1681 tagagcaggg gattagctct atctgacacc ttctgtatct tcattctaaa gtggggtcat
     1741 gcttttaggg gtggtgtggc gggtgccatg gaagtggtaa tgcatgtgtt gatgcaggga
     1801 ttatgcaagc tgaaacttgt tctcaggggc catgtcagat gtgtgagaat acctggactc
     1861 ctggttttcc tccatagtaa aggggtgttc tcccactctc tacaagtctc ttcatgccag
     1921 agggttttca agactcccat ttagtggcca ggaggatttc attgggtttc tttctgtgac
     1981 tgccttctcc actgtaattg ggtgacccag cgagtttgga cctgcccagg ggtgttttag
     2041 agatgccctt ttacggcctg attcctttag acccacagat gtgattagcg aactgttgat
     2101 gtaatgtttg tgctaatgta ataagctcca agttgcttat ttcttggcaa gtatgtttat
     2161 atactggtct taattttgat aataataaat catattaaac cca
//
