LOCUS       XM_039082479            1242 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus aph-1 homolog B, gamma secretase
            subunit like 1 (Aph1bl1), transcript variant X1, mRNA.
ACCESSION   XM_039082479
VERSION     XM_039082479.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1242
                     /gene="Aph1bl1"
                     /note="aph-1 homolog B, gamma secretase subunit like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 2 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 72 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:120094192"
                     /db_xref="RGD:41103414"
     CDS             82..870
                     /gene="Aph1bl1"
                     /codon_start=1
                     /product="gamma-secretase subunit APH-1B isoform X1"
                     /protein_id="XP_038938407.1"
                     /db_xref="GeneID:120094192"
                     /db_xref="RGD:41103414"
                     /translation="MSVQATQSQVFFVDTLGIDWGAVQDESPNNTNILTRHVLPGACA
                     FFWLVSLLLSSVFWFLVRVITDNRDGPVQNYLLIFGVLLSVCIQELFRLAYYRLLKKA
                     NEGLKSINPEETAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNALGPGTVGIHGDSPQF
                     FLNSAFMTLVIIMLHVFWGIVFFDGCEKNKWYILLTVLLTHLLVSTQTLLSPHYEVNL
                     VTAYIIMVLMGIWAFCVAGGSRRSLKLCLLCQDKDFLLYNQRSR"
ORIGIN      
        1 tagctctctg ccgttgaagt cacctgggga tcagatacct attccctggc ccccacctcc
       61 acatcaatcc tcggactcag aatgtctgtg caggctactc agtctcaggt tttctttgta
      121 gacaccctgg gtattgactg gggtgcagtc caggatgaaa gcccaaataa tacaaatatt
      181 ctgaccaggc atgtcctccc gggagcttgt gccttcttct ggttggtgtc tctgctgctt
      241 tcgtctgttt tctggttcct agtgagagtc atcactgaca acagagatgg accagtacag
      301 aattacctgc tcatctttgg agtgttgctc tctgtctgta tccaagagct gttcaggctt
      361 gcatattata ggctgttaaa aaaagccaat gagggtttga aaagcataaa ccctgaggag
      421 acagcaccct cgatgcgact gttggcctat gtttctggct tgggctttgg aatcatgagt
      481 ggagtgtttt cctttgtgaa caccctgtct aatgccttgg ggccaggcac agtgggcatt
      541 catggtgatt ctcctcagtt cttccttaat tcagctttca tgacgctggt tatcataatg
      601 ctgcacgtgt tctggggcat cgtgtttttt gacggctgtg agaagaataa gtggtacatc
      661 ctcctcacag ttctcctgac ccacctgctg gtgtccaccc agactttact aagtcctcac
      721 tatgaagtga atctggtgac agcatatata atcatggtgc tcatgggcat ctgggcattc
      781 tgtgttgctg gaggcagccg ccgaagcctg aaactctgtc tgctctgcca agacaaggac
      841 tttcttcttt acaaccagcg ctccagataa cctctgacgg tcagcacctc caaacagcag
      901 cctgtgtgcc agaggaaggg cagccgggcc ctgttctaaa atgacccttt tcttctggag
      961 ctttggagca gcagagcttc tagcctgcaa ctgtcctgtg ctttcatgca gcagcctctg
     1021 gaagagctgc agtgtggcct gcagcctggc tgcacatttg aggcatctgg gaaacaaaga
     1081 ccgatgcttc tgggcctccc ctctagactc gagtatccca gatgtgcaat acagctgagt
     1141 cactggggtc caatgggaag tttcagagaa cccaaaggca gttctgtatt tgtctcctaa
     1201 gccaacctct gctgagcaag taaatttctg aaaacctggg ta
//
