LOCUS       XM_006235711            3209 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus APC down-regulated 1 like (Apcdd1l),
            mRNA.
ACCESSION   XM_006235711
VERSION     XM_006235711.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006235711.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006235711.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3209
                     /gene="Apcdd1l"
                     /note="APC down-regulated 1 like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     4 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499949"
                     /db_xref="RGD:1562045"
     CDS             640..2139
                     /gene="Apcdd1l"
                     /codon_start=1
                     /product="protein APCDD1-like"
                     /protein_id="XP_006235773.1"
                     /db_xref="GeneID:499949"
                     /db_xref="RGD:1562045"
                     /translation="MLNYACILVLLGATTTETDGTSGDGRLHWEPQCQQPVPKGTPIT
                     VVPLPLLTGPWISTGCEVRPGPEFLTRSYTFYSNHLFRAYQFYYRDPSCQQPTHSLLI
                     KGKVHLRQASWVTPGATEADYHLHKVGIVFHSHHALLDIARRLNQTQAGQDCTGRLPP
                     GQAWLPGTLYELLSSQVPGDCMVALGFSMHELSLLCLQRHIQQQPGLAPHLVEELFLG
                     DVHTDWAERQHYRPTGYQSPLQSVVHHTRPCPACSLLAHSNEHRPPVLPSRPTLPLRL
                     GGHWVSVGCEARPAVLFLTRHFSFDDRKRSWEGRYHHFSDPACRRPTFTVFAAGHYSG
                     GTPSPRVHGGTELTFVVTRAHVTPMDRGTTDILNFSKPSSCGGPGIWSVGTERDVTAT
                     NGCLPLGIRLPHVEYELFKMEQDPHGQSLLFIGQRPTDGSSPDTPEKRPTSFQAPLML
                     CKRQAQGAPRPSRQWPPMQRPPIGWAPSLPAISLPLLFLTQELAFSEWL"
ORIGIN      
        1 ggcattttcc tgtcttcaca gctgctttgc ctctgagctg ccacccaaaa ccgactcgct
       61 tggatgagtc tggtggggta ggggcaggag gaggagttgg ggtggaggag gaagcccgtc
      121 ccagtcgact ctaggctttg cctaattgca gagagccttg cagaccagat ccagggttgc
      181 ctactttcac tgtggtccta cgctaagtat ctggaagacc tcaatagaaa tttctggggt
      241 ccaggaccca gaaactctaa gaaaaacttt ctgcatcccc taggcctttg ctctttctca
      301 gaacagctct ggcctcagtg ctctggcttt gtgtggaggc ctccttgccc tggactggac
      361 tcttggggag gcgaggaccc tggaagcagg gcacaggagg gtcgcctgtg aatgtgagtg
      421 gcaggagctg ccacgcccca agactgtgca ctgcacaggt ctccacctct tctggcaagt
      481 ttaacctatg agtgcacagc tcagctgccc aggatcccga gcctaggaac aggaacacag
      541 cccaggcaag gggcatccga atctgcccca gcccacagct gccggagcct cctcttggtg
      601 ccttgtcttc cagccagcct ctccgggata cctgcagcca tgctgaacta cgcatgcatc
      661 ctggtactct tgggagctac caccacagaa acggatggga cttcaggaga tggccgtcta
      721 cactgggagc cccagtgtca gcagccagtg cctaagggta cgcccatcac tgtggtccca
      781 ctcccactcc tcacagggcc ctggatctca accggctgtg aggtccgccc agggccagaa
      841 ttcctcaccc gctcctacac cttctactcc aaccacctct tccgagccta ccagttctac
      901 tacagggacc cctcctgcca gcagcctacc cactcactgc tcattaaggg caaagttcat
      961 ctgcgccagg cctcctgggt caccccgggt gccaccgagg ccgactacca tctgcacaag
     1021 gtgggtatag tctttcacag ccaccacgcc ctgcttgaca tagccaggcg cctcaaccag
     1081 acccaggctg gtcaggactg cacaggacgg ctgcccccag gccaggcctg gctgccaggg
     1141 acactgtatg aacttctgag ctcccaggtc ccaggtgact gcatggtggc actgggcttc
     1201 agcatgcatg aactcagtct gctgtgcctg caacgtcaca tccaacagca gcctgggttg
     1261 gcacctcatc tagtcgagga gttgttcctt ggggatgtcc acaccgactg ggcagagaga
     1321 cagcactacc gtcccaccgg ctaccagagc cccctgcaaa gtgttgtgca ccacactcgg
     1381 ccctgcccgg cttgcagcct cctcgcccac tccaacgagc accgcccacc tgtcctgcct
     1441 tcccggccaa ccctgcctct gcgcctcggt ggccactggg tcagcgtggg ctgcgaggca
     1501 aggcctgcgg tgctgttcct cactcggcat ttcagctttg atgaccgcaa acgctcctgg
     1561 gaagggcgct accaccattt ctccgaccct gcctgccgcc ggcctacctt caccgtgttt
     1621 gcggctggcc actactccgg aggcacccca tcccctagag tccacggtgg caccgagctg
     1681 acatttgtgg ttacgcgggc ccatgtgacc cccatggacc ggggcactac agacatactc
     1741 aacttctcca agccaagcag ctgtggtggc ccaggaatct ggtcagtagg tacggagagg
     1801 gatgtcacag ccaccaacgg gtgcctgccc ttgggcatca ggctcccaca tgtagagtat
     1861 gagctattca aaatggaaca agacccccat gggcaaagcc tgctcttcat tggacagagg
     1921 cccacagatg ggtccagtcc tgatactcct gagaaacgcc ctacctcctt tcaggccccc
     1981 ctgatgctct gcaagaggca ggcccaaggg gcccccaggc cctcacggca atggcctccg
     2041 atgcagagac cccccattgg gtgggcccca agtcttcctg ccatctctct ccccttgcta
     2101 ttcctgactc aagaactggc cttctctgaa tggctataac atcagccttt aacttccatg
     2161 ggagcccctc gaacgctgta tggccctccc acagacaccc acctggctct gtgttgtcgg
     2221 agcattatgg gggaaggaca gcccttctcc gttgctctgt cttggatgaa catatggccc
     2281 tgccacctct agtttcgctt gcatcccaca gcgctcacca gaactacaaa gccaggacca
     2341 tagaccatgg ctatggctgc aagatgctgt ttctaaaacc ctactgctag tttaaatggt
     2401 gtcggtttac tggctcctcc tcaccttggg tattgagacc gagagagcat ccaaggatgg
     2461 tgcccaaggt gcctcctgct gcttggccag gttctgggtt gcggtgtaga gattattaat
     2521 ttgaatttaa caatacaaac tcagccaggg catgaattaa agatgccgct gggggctttc
     2581 agtgcctctc tgctctctgg caaagggctc gtctctctgg ggccagctgc attcttgaat
     2641 tctgcctgtt ggcatattca ggcatctgcc tttgcttctg taagtcagac ctcaagctgg
     2701 ccacacagca cacggataaa cccggtcctc cagggccaca gagcacggga agagggcttg
     2761 atctgagctg agaccttggc ctctccccgc aagctgaggc ctctaagact ccctcgccca
     2821 cgcatagcgc atagctctcg caagcttagg gctagccagg cagggcacgg tccgcagagg
     2881 aaagtgcatc tctgcctttg gaaactaatt aatactaatg atagcttcgg cacaatgtgc
     2941 tctgtaatta gccccgcatc tccttccaga acctactgct gtcaacagac agagaggaac
     3001 acagctagca tcttcggggc tgccccaggg ggaggtcagg gccacgaggc tgcgcaacag
     3061 catctggggg cgggacccag caagcctggc ctcccaagtc cccacgctaa tatgtcgggt
     3121 tctcatccgc tcaggggggc tgtcatcacg gtggggaccc cgctcgtagg cctaggcctc
     3181 atctgcacac tgcgagatta actggtgtc
//
