LOCUS       XM_001071384            3420 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus APC down-regulated 1 (Apcdd1), mRNA.
ACCESSION   XM_001071384
VERSION     XM_001071384.5
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086036) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 31, 2024 this sequence was replaced by
            NM_001432563.1.
            
            On Jan 21, 2021 this sequence version replaced XM_001071384.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3420
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3420
                     /gene="Apcdd1"
                     /note="APC down-regulated 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 160 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:689616"
                     /db_xref="RGD:1589962"
     CDS             370..1914
                     /gene="Apcdd1"
                     /codon_start=1
                     /product="protein APCDD1"
                     /protein_id="XP_001071384.2"
                     /db_xref="GeneID:689616"
                     /db_xref="RGD:1589962"
                     /translation="MSRVRRLLLGYLFPALLLHGLGEGSALLHPDSRSHPRSLEKSAW
                     RAFKESQCHHMLKHLHNGARITVQMPPTIEGHWVSTGCEVRSGPEFITRSYRFYNNNT
                     FKAYQFYYGSNRCTNPTYTLIIRGKIRLRQASWIIRGGTEADYQLHGVQVICHTEAVA
                     EQLSRLVNRTCPGFLASGGPWVQDVAYDLWQEESSHECTKAVNFAMHELQLIRVEKQY
                     PHHSLDHLVEELFLGDIHTDATQRVFYRPSSYQPPLQNAKNHNHACIACRIIYRSDEH
                     HPPILPPKADLTIGLHGEWVSQRCEVRPEVLFLTRHFIFHDNNNTWEGHYYHYSDPVC
                     KHPTFTIYARGRYSRGVLSSRVMGGTEFVFKVNHMKVTPMDAATASLLNVFSGNECGA
                     EGSWQVGIQQDVTHTNGCVALGIKLPHTEYEIFKMEQDARGRYLLFNGQRPSDGSSPD
                     RPEKRATSYQMPLVQCASSSPRAEDLLEDSRAHLYGRAAGRTAGSLLLPAFVGLWTLP
                     HWRVLR"
     polyA_site      3420
                     /gene="Apcdd1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcaaatatga agagactcag ccggggcggc agcagcggcc actatacctc cgagctgtgc
       61 gcgccacggc tggggcgggc ctcgggacta gggctgggag ccaaggggcc ggggagggac
      121 ccggagaggc tgggctgcgg ttcggagtcc cgcgctgaca ggggcccgac ggctccgagg
      181 gagcgcgcgc cccgcagtcc cgcgctgcgc ccgccgggta tggggcgcgc cgccgcctga
      241 ggccgagcct ggcgggcgcc cgccgggggc tgcggccgcg gagtcgagcg cgccccgcag
      301 cggagtggcc cgcgcgcgcg atcgcggggg accgagacga actacaacga ggcccggagg
      361 aaaccagaga tgtcccgtgt gcgccgcctt ctgctcggat acctgttccc agcccttctg
      421 ttgcatgggc tgggagaggg ctctgccctc cttcatccgg acagcagatc acaccctcga
      481 tccttagaga aaagcgcctg gagggctttc aaggagtcac agtgccatca tatgctcaag
      541 catctccaca atggcgcacg gatcacggtg caaatgcccc caaccataga gggccactgg
      601 gtgtccacag gctgtgaagt gaggtcgggc ccagagttca tcaccaggtc ttacagattc
      661 tacaacaata ataccttcaa ggcctaccag ttttattatg gcagcaaccg ctgtacaaat
      721 cccacttata ctctcatcat ccgaggcaag atccgccttc gtcaggcatc ctggatcatc
      781 cgtgggggca ctgaggctga ctaccagctt catggcgtcc aagtcatctg ccacacagaa
      841 gcagttgctg aacaactcag tcgactggtg aaccgaactt gcccaggctt cctggcttct
      901 ggtggtccct gggtacagga cgtagcctat gacctgtggc aggaggagag tagtcacgag
      961 tgcaccaagg ctgtgaactt tgccatgcat gagctgcagc tcatccgtgt ggagaagcaa
     1021 tatccccacc atagcctgga ccacctggta gaggagctct tcctgggcga catccacact
     1081 gacgctaccc aaagggtgtt ctaccggcca tccagttacc agcctcccct gcagaacgcc
     1141 aagaatcaca accatgcgtg catagcctgc cgcatcattt accggtccga tgaacaccac
     1201 cctcccatcc tgccccccaa ggctgacctg accattggcc tccatgggga atgggtgagc
     1261 cagcgctgtg aggtacgccc cgaagtcctc ttcctcaccc gccacttcat cttccatgac
     1321 aacaacaaca cctgggaagg gcattactac cactactcgg accccgtctg caagcacccc
     1381 acattcacca tctacgctcg aggccgctac agccgcggtg tgctgtcatc tagggtcatg
     1441 ggtggcacag aatttgtgtt caaagtgaat cacatgaagg tcactcccat ggatgcagcc
     1501 acagcctccc tcctcaatgt cttcagtggg aatgagtgtg gggctgaagg ctcctggcag
     1561 gtgggtatcc agcaggatgt gacacacacc aatggctgtg tggctctggg catcaaacta
     1621 cctcacacag agtatgagat cttcaaaatg gagcaagacg cccggggccg ctacctgcta
     1681 ttcaatggcc agaggcccag cgatggttcc agcccagaca gaccggagaa gagagccaca
     1741 tcctaccaga tgcccttggt ccagtgtgcc tcttcctcac cgagagctga agacttgttg
     1801 gaagacagtc gagcccatct gtatggccga gcagcaggga ggacagctgg gtccctgttg
     1861 cttcctgcct ttgtcggcct ttggacacta ccacattggc gcgtcctcag atagaaggcg
     1921 ttttctaaac caagactctc taccatgtat gacttttctt cacacagaga aaggacagtg
     1981 attcttttga tgcacttgaa tgcctgagat ctgccgttgc ctctcctctt ttcccccttc
     2041 cagcctctga gtcagtcgcg agcagaatgt ttgacgtttc agctctgaat atcttccagc
     2101 ctgatccgtg gcctgagaac ttcatagccg tgattgcact ttaagtcggc agagaactgg
     2161 agctagtgtg tgtagcagtg gcagcaaggg tagcagcgag ggtggcagtg agggtggcag
     2221 ctgccgcctt ccatctgtcc cctgactccc gcctatattt ctgagctgag cttaaaagat
     2281 acaagtgaca aggtgcagct ttctctgccg ttgcttctct ttatctctcc aaatcccttc
     2341 cacactccag gttttccaca ctggacttgg gaccgccatt aagaccccat gtatgaatac
     2401 aggaaagacg ggatgtcttg tgcataagag aagatgaaaa ggttcaacta aatctttgtt
     2461 ccagccttaa tgccaatcaa ccctttcaga aatgttgagt agaggggtgt ccataaaacc
     2521 acaaagtaac ttaaactctg tttactagca cccgttttcg tttgttgcga agagatgtgt
     2581 gccacatact tggtttggtg attacagaat acagtgtgct gcttaaccct cagaggagac
     2641 tgatccggtt gggaaattca gagcagctcc tgtttcaggc agccagaagc agtagtggag
     2701 ggagagatta tgttaagtgc cacacaagtg acaaggagat ctgtggtgtt ttctccaact
     2761 gagccctctg tgcccactgt ggttagagtg gacacatcca ctctgccatc tttgacacgc
     2821 agaaactgaa catcagtgct ccagtaacct acccatgaaa agagattcgg gtgggattca
     2881 cccacagagg agccgctctg ctcagagcca tccctgtgct ccgtggagtc tatggggagt
     2941 caccctgtta ctagaattac tgacttgact cagcttcctc tctacatttt cttggctctg
     3001 tcccggctgt gagatccaga gccatctcat tcagagtgag ctgcttcaca gccctaggaa
     3061 gggaggaggg gacggccacc cattcctttg tattattgcc accggtgcta taaacaccaa
     3121 gtgctattgc tcacaaagac ccatgcaggc aagttgggga gaaacagaaa acctagatgg
     3181 aactgaaagc agacatggag accaggatcc aggagaagag tcagtcctgt atttaagaat
     3241 tcactttatg aagcagtagc attcagtgtg gtgttaaatt ataacgaagg catggagtac
     3301 cagagtgctt tatatttaga ttatatttta agtcatggtg catacttgag ggggtttatt
     3361 aaaaatgaaa gtactaactt aatgtctact aagtttaata aacaaagaat ttggaagtaa
//
