LOCUS       XM_039092524            6799 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus amyloid beta precursor protein binding
            family B member 2 (Apbb2), transcript variant X2, mRNA.
ACCESSION   XM_039092524
VERSION     XM_039092524.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6799
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6799
                     /gene="Apbb2"
                     /note="amyloid beta precursor protein binding family B
                     member 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 51 ESTs, 6 long SRA reads,
                     6 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 51 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:305338"
                     /db_xref="RGD:1562438"
     CDS             626..2911
                     /gene="Apbb2"
                     /codon_start=1
                     /product="amyloid beta precursor protein binding family B
                     member 2 isoform X1"
                     /protein_id="XP_038948452.1"
                     /db_xref="GeneID:305338"
                     /db_xref="RGD:1562438"
                     /translation="MSEVLPADSGVGTLAVFMASSGTTDIANRNSPATPPNTLNLRSS
                     HNELLNAEIKHSDAKNSTPPKCRKKYALTNIQAAMGLSDPAVQPLLGNGSANIKLVKN
                     GENQLRKAAEQGQQDPNKNLSPAAVINLTSEKLEGKDLHPQESSGCEILPSQPRRTKS
                     FLNYYADLETSARELGQNLGPCQGVGEEKAQPGPGQAPVVIGNGDLVPQKPNKPQSSP
                     EDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPD
                     ETADIWSDHSFQTDPDLPPGWKRVSDIAGTYYWHIPTGTTQWERPVSIPADLHGSRKG
                     SLSSVTPSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRY
                     ASLKLRNAPHADDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQ
                     LSYCKNDIRDTVGIWGEGKDMYLILENDTLSLVDPMDRSVLHSQPIVSIRVWGVGRDN
                     GRERDFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSL
                     QERTNMSLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDRPVGMDTLNSAIENLMTSSS
                     KEDWPSVNMNVADATVTVINEKNEEEILVECRVRFLSFMGVGKDVHTFAFIMDTGNQR
                     FECHVFWCEPNAANVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPADSVTRRVTTNV
                     KRGVLSLIDTLKQKRPVTETP"
ORIGIN      
        1 ccaggcccct ccaagccttt cctcgcgcag ccgccgccaa agcctggaga agtggaatct
       61 cgccgccgct gctccctgcg cgggcctcgc ggagccgcac tgggcatgct cagtcgccgg
      121 agccagtgct gctctaagta ggaagctcgc gtgctgcagc ccgcagctga tccgggcgct
      181 cagcgggctg cgaaacctag gacccgggtt cagagccgat cgatcgccgc gcagcgctgg
      241 ttggagtgtc tgctggggac tcactgtact ctctagccaa gcatgctgtg gtcagatctg
      301 cccagccctg gaatagaaac ctttgccgga tggaaaatcc acaaaagaaa gctcttgtga
      361 aaagctgatt ctgacattga cttaagtgcg cccaggttgg tgttaaagaa gctgctggag
      421 aaactggatc tggttggggg tgtggttttg tgttcgttct ctagccacct cactggttgg
      481 cgagtccttg ggagttcctg agtcccctgc taacaagctg actgtcgcta tgggcagaag
      541 gtacctagag gctccggggt gtccaggcag ctcatattgc aaattataac ccgtttcctg
      601 caccactgct ggcgcccagc gatccatgtc agaagtactt ccagctgatt caggtgtcgg
      661 caccttggca gtgtttatgg caagcagcgg aaccacagac attgcaaatc ggaacagccc
      721 agccacacca ccgaataccc ttaatctccg ttcctcccac aatgaactat taaatgcaga
      781 gatcaaacac tcagatgcca agaatagcac gccccccaaa tgcaggaaaa aatatgcact
      841 gactaatatt caggcggcca tgggcctctc agatccagcc gtacaacctc tgctgggaaa
      901 tggctctgcc aacatcaagc tggttaaaaa tggggagaac cagctacgca aggctgcaga
      961 acaggggcag caggacccca acaagaacct cagccctgca gcggtcatca acttaacttc
     1021 tgagaagctg gagggtaaag atctccaccc acaggagtcc tcaggctgtg agattttgcc
     1081 ctcccagccc aggagaacta agagcttcct caattactat gcagacctgg aaacctcggc
     1141 tagagaacta ggacagaacc tgggcccatg ccaaggggtt ggagaggaga aagcccagcc
     1201 aggcccaggc caggccccag tagtcattgg gaatggtgac ttggtgccac agaaaccaaa
     1261 caaaccccag tccagcccag aggatggcca agtagccaca gtatcatcca gcccagagac
     1321 caagaaagac caccctaaaa caggagccaa aaccgactgt gcactccatc ggatccagaa
     1381 cctggcacca agtgatgagg aatccagctg gacaacgctg tcccaagaca gcgcctcccc
     1441 cagctcccca gatgaaacag cagatatctg gagtgatcac tcatttcaga cagatccgga
     1501 tttgccgcct ggctggaaaa gagtcagtga cattgctggg acctattact ggcacatccc
     1561 aacagggacg actcagtggg aacggcccgt ctctatccca gcggatctcc acggttctag
     1621 gaaagggtca cttagctctg taacgccatc tcccacccca gagaacgaga aacagccatg
     1681 gagtgatttt gctgttctga atgggggaaa gattaatagt gacatttgga aggatttgca
     1741 tgcagccaca gttaacccag accccagttt aaaagagttt gaaggagcaa cactgcgcta
     1801 tgcatccttg aaactcagaa acgcccctca tgccgatgac gatgattctt gtagtatcaa
     1861 cagtgaccca gaagccaagt gttttgctgt gcgttctctg ggctgggtag agatggcaga
     1921 ggaggacctt gcccccggga agagcagtgt tgctgtcaac aactgcatcc ggcagctttc
     1981 ctactgcaaa aacgacatcc gggacacagt cggcatctgg ggagagggca aagacatgta
     2041 cctgatcctg gaaaatgaca ctctcagcct ggtggacccc atggaccgct ctgtgttaca
     2101 ctcccagccc atcgtgagca tccgagtgtg gggtgtgggc cgagacaacg gccgagagag
     2161 ggactttgct tatgtggcaa gagacaaaga cacgagaatt ctgaaatgcc atgtgtttcg
     2221 atgtgacaca ccagcaaaag ccattgccac aagtctccac gaaatctgtt ccaagattat
     2281 ggctgaacgg aagaatgcca aagccctggc ctgcagctcc ttacaggaga ggaccaatat
     2341 gagtctcgat gtccctttgc aagtagattt tccaacacca aagacggagc tggtgcagaa
     2401 gttccacgtg cagtacctgg gcatgttacc tgtagaccga cctgtcggca tggacaccct
     2461 gaacagtgcc atagagaatc ttatgacgtc atccagcaag gaggactggc cttcggtgaa
     2521 catgaacgtg gccgatgcca ctgtgacagt catcaatgaa aagaatgaag aggagatctt
     2581 ggtggaatgt cgggtgcgct ttctgtcctt catgggcgtc gggaaggacg tccatacgtt
     2641 tgccttcatc atggacactg ggaaccagcg ctttgagtgc cacgtgttct ggtgtgagcc
     2701 taatgcagcc aatgtgtcgg aagctgtcca ggctgcctgc atgctgcgat atcagaagtg
     2761 cttggtagcc aggccacctt cacagaaagt ccgcccccca cccccgccag ccgattcagt
     2821 gacccggaga gtcacaacca atgtgaagcg aggggtctta tctctcattg acactttgaa
     2881 acagaagcgg cctgtcacag agacacccta gcagcccggg acgcggggag tctgtcactg
     2941 tttcctgagg atcgagtagc tacactaaag aagcccacgc ctggccttcc actcagttgc
     3001 tgatgctttg tctccagaga atttatcttt aaccagacag tgttagacaa gcatgtgacc
     3061 tcgtcttgcc gccatcatgt gatatgaaaa gaagcatgat tttttttcct gtaagttaca
     3121 tcatgagcag tggaaggttt tcttctcgtt gtaaatattg tgaacaggac ttccagcgca
     3181 cacaccgaag aatgcggcca cacccttcct agacaactaa cacgtgtcct tggatgaacg
     3241 gtgcccaagt ttgttttgct gtcctcttga ctggatctgt cacaagccag cttggggtcc
     3301 ctcggcactt tgccccgatt tcagctttta agacatttgg atcctgagta acagatacca
     3361 ttgaattgct gtaaaagtag ggtgatgagc tcgggtttca gtctttccta acagcgagcc
     3421 tgttggacaa aactcgcagc tggcgttggt acagacacca gccacccgtt ttcctcggcg
     3481 agctctctga cgcgtggaca ccggctcacg tctacagctg tttggggtgc tgggcaaagg
     3541 agaactttaa aattgataga aaactaaaat tgaggaatta aaatcaagca aaaaaaaata
     3601 gcctttcttt tcagatggtt cttttcaggt ggttttcaga ctggttattt taaaaaaaga
     3661 gattaacaga gtcacgatgc attcgggatg gaacgtattt caaacttctg ccttacattg
     3721 tacaatgcag ctagagaatt aaagtgtact atgccattct ctctacccac acctgaaaag
     3781 tgaaatattc ctacagtttc cacccctagt ttgataccga gctaatatgc aatttagagc
     3841 tgaggaaatg ttctttatgt ctctgtcgca cactagatta ttttccacct gcactgcgtg
     3901 gttcttgtta gttctcttcc tggagacaag tgtgtgctcc tggaatcccc tcgctgcccc
     3961 aacctccctc tgtgctccta tgtccaggaa gctgtctgtc catcatatac tgtccatggc
     4021 aacgagtttt aagttgtcat tctcctgaat ttacgtgttt aatgttagaa atgtgttaag
     4081 acctgactag aagatgtgtt tttaaacttc tgttttccca ttttactttc aaagatttaa
     4141 ttttttttcc tatcagagca aaatatactc agaaatgatg ggtttcctga cagtgtctcc
     4201 catgtatcag tttcctgcct cttttttatg tagctaagga acctaaccgt aagcacatac
     4261 aactttagac tctcttggcc ttgttgttta aaaggtcatc ttacttgtgt tgtttatgtt
     4321 taatgtcaga accaatatcc agttataaaa tagtgctttt ttttttaacc ttgctctgta
     4381 cctgtcagaa cagtctgcac ggtgtgatca cgtttgagcc ttacatggta ggaaaggcac
     4441 taaacaaact gaaggaatga gaacacaggg caccaaaagc taaagaagtg gcttaggatg
     4501 ccaccgaagt ccatgagagc cgggatcacg acccacatct cgaaactttt accacatttt
     4561 atctcctccc tgcaatcagg aggacccttc acaaatggct ctggggccat gcagagaaca
     4621 gaagtacagt caggcgacct cagagttccc gagtgaatta ggaaagtgtc cactttatct
     4681 acccagcggc acttactgta agaccattgt cttttctcgg tccaggactg tgttcctcaa
     4741 atgtgtcaca gaggaagaat atctgtcctc agcagcctgg tcccatctca gacttccccg
     4801 agatcattac ctgtggtagg aacattccca cctgtggccc tcaccagtgc agattgtggt
     4861 ggggtgacag gcggtgggag gtggagaagc tggattgtcc accggcgtcc tgactttaca
     4921 ggaaaagcaa tgttgcttga gaaggggtta tgcttggtgc cggcttgcac gctagctgaa
     4981 gtaacgggtg ccatctgaga ctttctgcat accggaaacc ttactgtgcc agagaaaaac
     5041 cgtttagaat ccgtcctcgt ggtctcttac tttgatctgt ttcttctcca cagcagaagg
     5101 ttttagagca cgcagcttca aaactctgaa gagtccacgt ttctataggc ggtctcaccc
     5161 aaaccccttt ggtttttttt tttaagacat gtctgtttgt tttcaggatc aagaagactg
     5221 agctagcttt aaagagcaaa ccgatttata tatgcaattt taagatgcag ttaagatgaa
     5281 tgatagcctt ttgcaagtga aatgctttta ctgcacattt tctgttttgg gaatagcttt
     5341 gtgttctaag tgcaggttga tttttttttt ttgtaaaatt atgttaaaca atatgttcag
     5401 atcctttctg ccatggccaa aaaagtatgt atggaagtgt gtttgtatcc gtctgtgaga
     5461 ggaggccgat gttttacctg aggtctttgt gatacttcgg ttatctatgc attctttctc
     5521 tgtgattcgg taaacaggcg gccatgttca cgatgccttg tgtgtcttat ctttttcttt
     5581 ttttaaatta acctgttaaa tacagcttga aatattttta ttttatttat tctgttttta
     5641 ctgaaatata ctgcattcct gtgttactgt actatctttg ctgggtatga tgtctgtgta
     5701 tccaggtctc acttaagtaa cccagtgaac tctacgtcat ctagaaagtg gttctgtaac
     5761 gattggcagt cacatggttc tgtaacagtt ggcagtcaca tctctgttgg aatatgtagg
     5821 aaagaagtta acccttaaag ttctttttat tttttacaag cagctagaca gatgtgccct
     5881 caccacctta tccgcatgct ccttggaagc gttgaggggg cagccgacat gccgtctggc
     5941 ggagaacttt actttgtaga caaaggcact gtggggcatc atttttatac ccttctcaac
     6001 acgcgtgatt tcatccaaaa tacacacaca gagccacacg cctttgtttc cacctggatt
     6061 taaggccacc cctagccaat tagagccact gttttgtctg tctgtctgtc ctactgcatg
     6121 aagggacatt agacccattt ccattaaagc aaattcttgg tgataactgt tggcagtgct
     6181 acttttattg ttttaatcca cattaggggt ttaagaagga cacataacaa actattcaaa
     6241 ctggacctct taacttgtag ccccaaactc cccttaatgt gtggtatatt caatttgtga
     6301 gcatttcaac acaagacttc agaagccaca tgtctccctg acattagcac aatttaatga
     6361 aactgaaagc tctctagtcg gcccggttta acctaatatc tgacgtgttt atagccagta
     6421 agagagtaat tgagcttgtt tcggcatact ggtggtatgg cccagtggta tagctcttac
     6481 accacctgtg cagggatcgg agtttagccc ctggagagga caggaggaga ggttggcact
     6541 tcaaggctgt gaagacatct ccaggcggcc acatcggccg cttcctcctg agaggacatc
     6601 tcatttcttt gcgttgccgt ttgctgtgga ccacgtttac acgtttacat gtaaaatgtc
     6661 gtgggaataa atgtagctgc ataaaagcat tctcgttgat ctgatagcca ggccacatat
     6721 ataagaaaca catacaaatt tagtgtctct tcggtaattt tattttttgt attcttactt
     6781 caaattaaac ttttttttt
//
