LOCUS       NM_001100577            2488 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus amyloid beta precursor protein binding family B
            member 1 interacting protein (Apbb1ip), mRNA.
ACCESSION   NM_001100577 XM_001053610 XM_225631
VERSION     NM_001100577.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Banno,A. and Ginsberg,M.H.
  TITLE     Integrin activation
  JOURNAL   Biochem Soc Trans 36 (Pt 2), 229-234 (2008)
   PUBMED   18363565
  REMARK    Review article
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Menasche,G., Kliche,S., Chen,E.J., Stradal,T.E., Schraven,B. and
            Koretzky,G.
  TITLE     RIAM links the ADAP/SKAP-55 signaling module to Rap1, facilitating
            T-cell-receptor-mediated integrin activation
  JOURNAL   Mol Cell Biol 27 (11), 4070-4081 (2007)
   PUBMED   17403904
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On or before Dec 18, 2009 this sequence version replaced
            XM_225631.4, XM_001053610.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.58655.1,
                                           SRR26643429.53165.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000017.1  89891022-89891093
            73-160              JAXUCZ010000017.1  89893710-89893797
            161-459             JAXUCZ010000017.1  89896744-89897042
            460-537             JAXUCZ010000017.1  89899554-89899631
            538-697             JAXUCZ010000017.1  89908557-89908716
            698-819             JAXUCZ010000017.1  89910161-89910282
            820-903             JAXUCZ010000017.1  89921267-89921350
            904-1047            JAXUCZ010000017.1  89924910-89925053
            1048-1158           JAXUCZ010000017.1  89930186-89930296
            1159-1257           JAXUCZ010000017.1  89934815-89934913
            1258-1366           JAXUCZ010000017.1  89935534-89935642
            1367-1470           JAXUCZ010000017.1  89936729-89936832
            1471-2488           JAXUCZ010000017.1  89940082-89941099
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..2488
                     /gene="Apbb1ip"
                     /note="amyloid beta precursor protein binding family B
                     member 1 interacting protein"
                     /db_xref="GeneID:307171"
                     /db_xref="RGD:1304795"
     CDS             1..1995
                     /gene="Apbb1ip"
                     /note="amyloid beta (A4) precursor protein-binding, family
                     B, member 1 interacting protein"
                     /codon_start=1
                     /product="amyloid beta A4 precursor protein-binding family
                     B member 1-interacting protein"
                     /protein_id="NP_001094047.1"
                     /db_xref="GeneID:307171"
                     /db_xref="RGD:1304795"
                     /translation="MGESNEDIDQMFSTLLGEMDLLTQSLGVDTLPPAEPKPPREEFN
                     FSVGFKDLNESLNALEDQDLDALMADLVADISEAEQRTIQAQKESSQNQGHSALLEAS
                     DGQGTAPRGYGANAAAFDVSDYEEALPPPPADPMLDLLPPPPPPPPKPLSKEEEEALA
                     KADKIKLALEKLKEAKVKKLVVKVHMGDNSTKSLMVDERQLARDVLDNLFEKTHCDCN
                     VDWCLYEIYPELQIERIFEDHENVVEVLSDWTRDTENRVLFLEKEEKYAVFKNPQNFY
                     LDNKGKKEKESNEKMNAKNKEYLLEESFCGTSIIVPELEGALYLKEDGKKSWKRRYFL
                     LRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQK
                     ESQYIKYLCCDDARTLSQWVMGIRIAKYGKTLYDNYQRAVARAGLASRWTNLGTATTP
                     AQPAAGLKTGTSQPNGPMPQAAPSPGPPLRETLTQTETTKDEKQGLANHSPGASRENH
                     RPKSSLLPPPPPVRRSSDTCGSPALPPKAKGPGSCTFTAQPENFLPPPPPPPPQEDDN
                     SMLLPPPPPLAYLDEPPDFVPPPPPPATVEDSALPPPPPPPPCLSQEMTKSSPLPAKK
                     LPVPPKRQENQGLPGAPRNTEQDFMSDLMKALQKKRGNVP"
     exon            1..72
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            73..160
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            161..459
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            460..537
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            538..697
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            698..819
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            820..903
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1047
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1158
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1257
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1366
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1470
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..2488
                     /gene="Apbb1ip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggtgaat caaatgaaga catagaccag atgttcagca ctctgctggg ggagatggat
       61 ctcttgaccc agagtttagg agtggacact cttcctcctg cagaacccaa gccaccccga
      121 gaagagttta acttcagtgt ggggtttaag gatttaaatg agtccttaaa tgcactggaa
      181 gaccaagatt tagatgccct catggcagat ctggtagcag atataagtga agccgaacag
      241 agaaccatcc aggctcagaa agagtcctct cagaatcaag gtcactcagc acttctggag
      301 gcctcagatg gccagggtac agccccaaga ggttatggag caaatgctgc tgcttttgat
      361 gttagcgact acgaggaagc tttaccacct ccaccagcag atcccatgct agaccttcta
      421 ccccctccac ctcctcctcc tcctaaacct ctctctaaag aggaagaaga agccctagca
      481 aaggctgata agattaagtt ggcactggaa aagttgaagg aagccaaggt taagaagctt
      541 gtagttaagg tgcacatggg tgacaacagt accaagtcac tgatggtgga tgagcgacag
      601 ttggctcggg atgttctcga caatcttttt gaaaaaaccc actgcgactg caatgtggac
      661 tggtgccttt atgaaatata tcccgaattg caaatcgaga gaattttcga agaccatgaa
      721 aatgttgttg aagtcttatc agactggaca agagacacag agaacagagt actgtttttg
      781 gagaaagagg aaaaatatgc tgtgtttaaa aaccctcaga atttctactt ggataataag
      841 gggaaaaaag aaaaggaaag caatgagaaa atgaatgcta aaaacaaaga atacttactt
      901 gaggaaagtt tctgtggcac atccatcata gtaccggaac ttgaaggagc tctttatttg
      961 aaagaagacg ggaagaagtc ctggaaacga cgctactttc ttctgagagc ttctggaatc
     1021 tattatgtac ccaaaggaaa gacaaagaca tcccgagacc tggcgtgttt catacagttc
     1081 gaaaatgtta acatttacta tgggattcag tgcaaaatga aatacaaagc acccactgac
     1141 cactgctttg ttttaaagca tcctcaaatt cagaaggaat ctcagtacat caagtacctt
     1201 tgctgtgatg acgcaagaac tctcagccag tgggttatgg gaataaggat cgccaagtac
     1261 gggaaaactc tctatgataa ctatcagcgg gctgtggcta gagctggact cgcctctcgg
     1321 tggacgaacc tggggactgc cactacacca gctcagcctg ctgcaggact taaaacaggc
     1381 accagccagc ccaatggtcc aatgccccag gccgcgcctt cccctggtcc tcctctccga
     1441 gagaccctga cacaaactga aacaactaag gatgaaaagc aaggcttggc taaccactcc
     1501 ccaggagcaa gcagggagaa ccaccgccct aagagcagcc tgcttccacc accccctcca
     1561 gtaagacgat cttcggacac ctgtggcagc cctgccttgc cacccaaagc caagggccct
     1621 ggcagctgca ccttcaccgc ccagcccgag aacttcctgc caccaccacc gcccccaccg
     1681 ccccaggagg acgacaacag catgctactc ccaccacccc cacccctggc ctacctcgat
     1741 gagccaccgg atttcgtgcc accgccccca ccacctgcaa ctgttgaaga ctctgcattg
     1801 ccacccccgc cgccaccccc accctgtctc tcccaggaga tgaccaagtc atctccattg
     1861 cccgccaaaa agctcccagt gccccccaag aggcaagaga accaaggact ccctggtgcc
     1921 ccaaggaaca cggagcaaga ttttatgtca gacctcatga aagcattgca aaagaaaaga
     1981 ggcaatgtac cctagagaca tgtcagcatc tgggacgctc tctagctaga ttcatatttt
     2041 ggtactctgc tgtcatgcat cttgttcatt ttagtaaaat gttttgccac tagaaataat
     2101 gtaaaaactc ttcactgttg tgcatactgt gttcatagcc attagactag ctgtatttgg
     2161 agtttctaac tgtatacatc caagcacaca aacatgcaca ttctgtatgt tttcacctga
     2221 atggactttt atcttgcagt acaagctaac tgaaatgata ttctggatat gtttctgtgt
     2281 gctcagaagg cacaaatttt taaaattaaa gtttgtctga aaatagtatt tatagaaata
     2341 gtgtttaaat tttgtatggt gtcaacacta ctttatattt gactctcaaa aagtttcaaa
     2401 ttcctatgcc tccttaagtc ttgttctatt tccttcttgg tgtctgtaac ctacagatat
     2461 agcaaaacag ggaaaaggaa aaagaaag
//
