LOCUS       XM_039092566            3323 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus amyloid beta precursor protein binding
            family A member 2 (Apba2), transcript variant X2, mRNA.
ACCESSION   XM_039092566
VERSION     XM_039092566.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092566.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3323
                     /gene="Apba2"
                     /gene_synonym="Mint2"
                     /note="amyloid beta precursor protein binding family A
                     member 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 19 ESTs, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:83610"
                     /db_xref="RGD:620845"
     CDS             382..2634
                     /gene="Apba2"
                     /gene_synonym="Mint2"
                     /codon_start=1
                     /product="amyloid-beta A4 precursor protein-binding family
                     A member 2 isoform X1"
                     /protein_id="XP_038948494.1"
                     /db_xref="GeneID:83610"
                     /db_xref="RGD:620845"
                     /translation="MAHRKRQSTASSMLDHRARPGPIPHDQEPENEDTELPLESYVPT
                     GLELGTLRPDSPTPEEQECHNHSPDGDSSSDYVNNTSEEEDYDEGLPEEEEGVTYYIR
                     YCPEDDSYLEGMDCNGEEYLAHGAHPVDTDECQEAVEDWTDSVGPHTHSHGAENSQEY
                     PDSHLPIPEDDPTVLEVHDQEEDGHYCPSKESYQDYYPPETNGNTGGASPYRMRRGDG
                     DLEEQEEDIDQIVAEIKMSLSMTSITSASEASPEHMPELDPGDSTEACSPSDTGRGPS
                     RQEARPKSLNLPPEVKHSGDPQRGLKTKTRTPEERPKWPQEQVCNGLEQPRKQQRSDL
                     NGPTDNNNIPETKKVASFPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKN
                     IRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQETM
                     MDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESE
                     DAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSEN
                     CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSING
                     TSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIIC
                     SLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRL
                     LTGQETPLYI"
ORIGIN      
        1 gtgcgggcac cggcagcatc gctttcacct gttctgcttg cccgggacca gactactaag
       61 gctccccaat cggccggtcc cagcacactc ccaggaatct gtgtgctccc caaagcgcca
      121 ccgggactcg taaagccggc ctcagcccgt gtcccaagga cccaggtccc agttctctgg
      181 agactgaggc actgctgaag ctcagccagg tgacaccccc gccccgtcgc agtagacttt
      241 cctgcagaca ggagcaggga gagccatcct gtgtgtggag actgccggaa gactggatca
      301 ccaggagagt tctcaggaca ttatcaaggc actcatttct gtggctgctt ccaggtaaca
      361 atggctgtgt gagtgtctac catggcccac cgcaagcgcc agagcactgc aagcagcatg
      421 ttggaccaca gggcccggcc aggtcctatc ccccatgacc aggagcctga gaatgaggat
      481 acagaactgc ctctggagag ctatgtaccc acaggcctgg agctaggcac tctgagacca
      541 gacagcccca cgcctgagga acaggagtgc cacaaccata gccctgatgg ggactccagc
      601 tctgactatg tgaacaacac gtctgaggag gaggactatg acgagggcct ccctgaggag
      661 gaggaaggtg tcacctacta catccgctat tgtcctgagg atgacagcta cctggagggc
      721 atggactgta atggggagga gtacctagcc catggtgcac atcctgtgga cactgatgag
      781 tgtcaggagg cggtagagga ctggacggac tcagtgggtc ctcatactca tagccacggg
      841 gctgaaaaca gccaagagta tccagacagc cacctgccta tcccagagga tgaccctact
      901 gtcctggagg tccatgacca ggaagaagat ggccactact gtcccagcaa ggagagctac
      961 caggactatt atcccccaga gaccaatggg aacacgggtg gcgcttctcc ctatcgcatg
     1021 aggcgtgggg atggggacct agaggagcag gaggaagaca tcgaccagat agtggctgag
     1081 atcaagatga gcctgagcat gaccagtatt accagtgcca gtgaggccag ccctgagcac
     1141 atgcctgagc tggaccctgg ggactccact gaggcctgtt cacccagtga cactggccgt
     1201 ggacccagta ggcaagaagc gaggcccaag tcgctgaacc ttccccctga ggttaagcac
     1261 tccggagacc cccaaagagg actcaagacc aagaccagga ccccagagga gaggccaaag
     1321 tggccccaag agcaggtttg caatggcttg gaacagccga ggaagcagca gcgctctgat
     1381 ctcaatggac ccactgacaa taacaacatc ccagagacaa agaaggtggc ctcgtttcca
     1441 agctttgtag ctgttccagg gccctgtgag ccagaagacc tcatcgatgg catcatcttt
     1501 gcagccaact acctgggctc cacccagctg ctctctgagc gcaacccctc caaaaacatc
     1561 cgaatgatgc aagctcaaga agctgtcagc agggtcaaga ggatgcagaa ggctgctaag
     1621 atcaagaaaa aagcgaattc tgagggtgat gctcagacac tgacagaagt agacctcttc
     1681 atttctaccc agaggatcaa agtcttaaac gctgacacac aggaaaccat gatggaccat
     1741 gccttgcgca ccatctccta cattgcagac attgggaaca tcgtggttct gatggccagg
     1801 cgccgcatgc ccaggtcagc ctctcaggac tgcatcgaga ccacgcctgg ggcccaggaa
     1861 gggaagaagc agtacaagat gatctgtcac gtgttcgagt cagaggatgc ccagctgata
     1921 gcccagtcaa ttgggcaggc cttcagtgtg gcctaccagg agttcctgag ggccaacggc
     1981 atcaaccctg aggacctgag ccagaaggaa tacagtgata tcataaatac ccaggagatg
     2041 tataatgatg accttatcca cttctcaaac tcggagaact gcaaggagct gcagctggag
     2101 aagcacaagg gtgagatttt gggtgtggtg gtcgtggagt caggctgggg ctccatcctg
     2161 cccactgtga tcctggcgaa catgatgaac ggcggcccag cagctcgctc ggggaagctg
     2221 agcattggcg accagatcat gtccatcaat ggcaccagcc tggtggggct gcccctcgct
     2281 acctgccagg gtatcatcaa gggcctgaag aaccaaacac aggtaaagct caacatcgtc
     2341 agctgtcccc cagtcaccac agtcctcatc aaacgtccag atctcaagta ccagctgggt
     2401 ttcagcgtgc aaaatggaat catttgcagc ctcatgagag ggggtattgc agagcgaggt
     2461 ggtgtccgag tcggccaccg tatcatcgag atcaacggac agagtgtggt agccacagcc
     2521 cacgagaaga tagtccaggc tctgtctaac tcagttggag agattcacat gaagaccatg
     2581 cctgcagcca tgttcaggct cctcacaggc caggagacac cgctgtacat ctaggtacac
     2641 cctgcctcgc caaggagcag ggactccagg cagacccacc tgggcccaga ggagccagaa
     2701 gccaggacaa agccctgacc cctgaccccg cagcccaacc aagaactctg gctctccccc
     2761 ctccccaccc ccaagggtgt gtccttgtca cctaggtttt ttttttgttt gtttggttgg
     2821 ttggtttggg gttttttttt tgtttgtttg ttttattttg ttttgggttt tgctaaaaaa
     2881 agaaaaggga aaaaaaaaag ctatgtcctt actgaagggg agtcacagga caatcctttg
     2941 taaaacttac cagtcttctg ccatattttc attgcggctg atgaagggtg ctcacaggta
     3001 gttctatgtg tggtgtgctg tgtctctact ccctgaggct atggaatgtg aatgtggcgc
     3061 ccaccccgcc cgcacatctg tgtggctgtg aagggagccc tctgtgatgc agctgcagcc
     3121 ttttctgccc ttggctggga cacctggggt ccagtggtgt cctaaaaggg cccccatgtg
     3181 ctggccttgc ctcctctaca caggcacagg gggcagcctg gctcccaggc tgagacttgt
     3241 gccgtgtggg aacgtgtgat tgattgtaag tatttacgca gcaaggggat gctcccaagt
     3301 taaataaaaa atcatggtca cga
//
