LOCUS       XM_039105699             704 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus adaptor related protein complex 5
            subunit sigma 1 (Ap5s1), transcript variant X2, mRNA.
ACCESSION   XM_039105699
VERSION     XM_039105699.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105699.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..704
                     /gene="Ap5s1"
                     /gene_synonym="RGD1561852"
                     /note="adaptor related protein complex 5 subunit sigma 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     205 samples with support for all annotated introns"
                     /db_xref="GeneID:499893"
                     /db_xref="RGD:1561852"
     CDS             348..704
                     /gene="Ap5s1"
                     /gene_synonym="RGD1561852"
                     /codon_start=1
                     /product="AP-5 complex subunit sigma-1 isoform X2"
                     /protein_id="XP_038961627.1"
                     /db_xref="GeneID:499893"
                     /db_xref="RGD:1561852"
                     /translation="MVHAFLIHTLRAPNLEDTGLCRVLYSCVFGAEKSPDDPRPHGAE
                     RDRLFRKEQILAVARWSHCVGCSSKHLDVPPQTRSLSSQLSLCPCMRPLTEPSTWQLG
                     TLSRSHRQCYGWACSP"
ORIGIN      
        1 acgcaaatgg gaccgacagt gggcgggact catggtggcc tggggtaatg acgtgttctg
       61 ctagcagaaa ggtgaccaga ggtcaaggtc tgcaaatcta ggttctcttc ctgaagcgcg
      121 tttgccaaat ttcctgttgg gtaactttaa attcttggtc ttagccgtgt ttaaacactg
      181 tatctcctca gccttgagac cccggggccg ccactctcac gctgcccaga gcggccaggc
      241 cctctctgtg tacctgtggc taactcgaat tcctgtgctc ttgcctccgc ctcccgaggg
      301 ttgggatttc aggtctccgg cttctctgga gaacccaccc tggagctatg gtccacgctt
      361 tcctcatcca cacgttaagg gccccgaatt tggaagatac aggcctttgc cgagtgctct
      421 actcctgtgt ctttggtgct gagaaatcac ctgatgatcc ccgaccacat ggtgcagaaa
      481 gggacaggct cttccgaaag gaacagattt tggcggtggc caggtggagt cactgtgtag
      541 gctgcagcag caagcatctg gatgttcctc cacagacccg cagcctcagt tctcagctga
      601 gtctgtgtcc ctgcatgagg cccctcacgg agccttccac ctggcagctg gggacccttt
      661 ccaggagcca cagacagtgc tatggctggg cgtgctctcc ttag
//
