LOCUS       NM_001271032            3551 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus adaptor related protein complex 5 subunit beta 1
            (Ap5b1), mRNA.
ACCESSION   NM_001271032 XM_001073814 XM_003749045 XM_003753380 XM_341994
VERSION     NM_001271032.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Hirst,J., Barlow,L.D., Francisco,G.C., Sahlender,D.A., Seaman,M.N.,
            Dacks,J.B. and Robinson,M.S.
  TITLE     The fifth adaptor protein complex
  JOURNAL   PLoS Biol 9 (10), e1001170 (2011)
   PUBMED   22022230
  REMARK    Erratum:[PLoS Biol. 2012 Mar;10(3). doi:
            10.1371/annotation/89dff893-c156-44bb-a731-bfcc91843583]
REFERENCE   2  (bases 1 to 3551)
  AUTHORS   Schroder,B., Wrocklage,C., Pan,C., Jager,R., Kosters,B.,
            Schafer,H., Elsasser,H.P., Mann,M. and Hasilik,A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On or before Aug 29, 2012 this sequence version replaced
            XM_341994.5, XM_003749045.1, XM_001073814.3, XM_003753380.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2007105.1,
                                           SRR26643298.6601.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                JAXUCZ010000001.1  212305612-212305670
            60-230              JAXUCZ010000001.1  212306049-212306219
            231-3551            JAXUCZ010000001.1  212306323-212309643
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..3551
                     /gene="Ap5b1"
                     /gene_synonym="Beta5; RGD1562657"
                     /note="adaptor related protein complex 5 subunit beta 1"
                     /db_xref="GeneID:361709"
                     /db_xref="RGD:1562657"
     exon            1..59
                     /gene="Ap5b1"
                     /gene_synonym="Beta5; RGD1562657"
                     /inference="alignment:Splign:2.1.0"
     exon            60..230
                     /gene="Ap5b1"
                     /gene_synonym="Beta5; RGD1562657"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..2711
                     /gene="Ap5b1"
                     /gene_synonym="Beta5; RGD1562657"
                     /note="adapter-related protein complex 5 beta subunit;
                     adaptor-related protein complex 5 beta subunit;
                     adaptor-related protein complex 5, beta 1 subunit"
                     /codon_start=1
                     /product="AP-5 complex subunit beta-1"
                     /protein_id="NP_001257961.1"
                     /db_xref="GeneID:361709"
                     /db_xref="RGD:1562657"
                     /translation="MGPLSREAWAQRLGSFRASPSAFLAGAEGEDLGHDLLSDLRSEK
                     LSELIKVSLLTLSLEYSDKLWPDALAAEAAATSLLDTLVLLPSKPSALRRLLLLAATT
                     ALVSGGALGPTSEASSRLLPLLLGLASGQDMGRSFGTTSEQRHLQATACECLGELERC
                     KPGLLAGALGVLRSLLGQKGPIQPVSLLLALVLHNTLVVQSRFGAGLQGLLVAKDSSP
                     GSCPWDWTLAEEWDDHLKPQAHGWPTAGEEERDFPILDPNPEDTRELKAAVAQLLDTS
                     YLLTPVAQAQLVWLLGWALQGLRGQPPVLFKPQLVRLLGTAQLTLLHSVLSLKAAFGE
                     ALFTAQDEALLLRRLTLVAQHPALPSPTHLFYLHCILSFPENCPLGPEGEEAAPLLLG
                     PQLRRGLMPSLLHDPMVLLARLHLLCLLCADDEEEEKGQLQGPQWFLQELLAGLQQRA
                     AVDGGPRALATLCFQASYLVTSCLTRQPTVQTSLVHGLAQLYRARPSLAPHFVDLLDE
                     VSPELREPLRKVLLREVVARPGKNEALRWHLQMLAKVAEGATQSAILGFLQAAAIHCT
                     DWGLHQALLRVCRALLRTGGGEGLADLLQELARQLENADGRDHARLYYVLLSHLSSSK
                     LGMALGPSLAAPALASSLMAENQGFASALMVQETSAPIQLSVGPQKAKGPLPVLHLQV
                     QALDTPVYSLELRFRVEGQLYEPVEAVHIPSVRPGQPAHPLHLPLQPRSPAPARLHVR
                     ALYTTPAGLTCHAHLPPLSVNFADLFLPFPQLPKGSELCFFDELWNSCLPKGVESRVW
                     CPLGPQGLEALVSQHLEPFVVVAQPPTTYLIAVRLPPHSMLLLRLEKAQVHGVPVALR
                     TDDWAVLPLVGDYLRGLAAH"
     exon            231..3551
                     /gene="Ap5b1"
                     /gene_synonym="Beta5; RGD1562657"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgccagcct gccagcccgg aaggagccga ccgagcgcct gcggcagctg actcaagcga
       61 gattaagtgg atgattgacc atgggtcccc tgagtcgaga agcctgggcc cagcgcctgg
      121 ggtctttccg agccagccca tccgcctttc tagcaggtgc tgaaggtgag gatttgggtc
      181 acgacctgtt gagtgaccta aggagtgaaa agctaagcga gctgatcaag gtttccttac
      241 tgacactgag cttggagtac tctgacaaac tttggcctga tgcccttgcc gcggaggctg
      301 ctgccacttc cttgttggac acgcttgtcc tcttgccctc aaaaccttca gctctccgga
      361 ggctcctgtt gttagcagcc actacagccc tggtgtcagg tggtgctctc ggacccactt
      421 cggaagcttc cagccggctc ctgcccttac ttcttggctt agcttctggc caagacatgg
      481 gacgaagctt tggaaccacc tcagagcagc gccatctaca ggccacagcg tgtgaatgcc
      541 ttggagaact tgagcgctgt aaacctgggt tgctggccgg cgctctgggg gtgctgcgga
      601 gcctcctagg gcaaaagggt cccatccagc ctgtcagcct gcttctcgcc cttgttctgc
      661 ataacacctt ggtggtacag tccaggtttg gggctggcct gcaaggcctg cttgtggcta
      721 aggactcctc ccctgggagt tgtccctggg actggacact ggctgaagaa tgggatgacc
      781 atcttaagcc ccaggcgcac ggctggccca cagctgggga ggaggaacgt gactttccaa
      841 ttctggatcc caaccctgag gacactcgag agctgaaggc tgcggtggcc cagcttctgg
      901 acacttccta tctgctcact cccgtggctc aggcccaact tgtgtggctg ttgggctggg
      961 cccttcaggg tcttcgggga cagccaccag tgcttttcaa gccacagcta gttcggctgc
     1021 tgggcacagc acagcttaca ctgttacact cagttctatc tctcaaggca gccttcggtg
     1081 aggccctgtt cactgctcag gatgaagcgc tcctgctccg taggcttacc ctggtggccc
     1141 agcacccagc cttaccctcg cccacacacc tcttttacct gcactgcatc ctgagcttcc
     1201 ctgagaattg tccattaggt ccagaagggg aagaggctgc cccactgctg ttggggcccc
     1261 agttacgccg gggcctcatg cccagtctcc ttcatgaccc aatggtcctc ctggcccgcc
     1321 tgcatttgct atgcctgctt tgtgctgatg atgaggaaga ggagaaaggc cagcttcagg
     1381 gcccacagtg gttcctgcag gagctgctgg ccggtcttca gcagagggca gccgtggatg
     1441 gcggtccccg agccttggcc actctctgtt tccaggcctc atacctcgtt accagctgcc
     1501 tgaccagaca gcccacagtc cagacatctc tggtccatgg gctggcccaa ctgtaccgag
     1561 cccgaccttc cctggctccc cactttgtgg acctcttaga tgaggtaagc cctgagctga
     1621 gagagcccct caggaaggtg ctgctacgag aggtggtagc caggccaggc aagaacgaag
     1681 cacttcgctg gcacctgcag atgctggcaa aggtggcaga gggagccact cagagtgcca
     1741 tccttggctt tctacaggct gcagccatac actgcaccga ctggggccta caccaggccc
     1801 tactgcgggt gtgccgtgct ctgctccgga cgggtggggg agaggggctg gcagacctgt
     1861 tgcaggaact ggccagacag ctggagaacg ctgatgggcg ggaccatgcc cgactgtact
     1921 atgtcctctt gtcccatctg tcaagttcta agttggggat ggcactgggc ccctcactgg
     1981 ctgcccctgc gctggcctcg tcactgatgg ctgagaacca gggcttcgca tcagcactga
     2041 tggtgcagga gacctcagct ccaattcagt tgagtgtggg gcctcagaag gccaaaggcc
     2101 cactcccggt gctgcatctg caggtgcagg cactggatac tcctgtgtac tctctggagc
     2161 tgcgctttcg tgtagaagga caactgtacg agcctgtgga ggctgtccac ataccctctg
     2221 tgcgtccagg acaacctgcc catcctctgc acctgccttt gcagccccgt agcccagccc
     2281 ccgcccgcct gcatgtccgg gccctttaca ccacaccggc cggcctcacg tgccatgccc
     2341 acctaccacc cctgtctgtg aactttgctg acctcttcct gcctttcccc cagctcccca
     2401 agggctctga gttgtgtttc tttgatgagc tctggaactc ctgcctgcca aagggtgtag
     2461 aaagtcgtgt gtggtgtcca cttgggccac agggcctgga ggccttggtg tcccaacacc
     2521 tagagccctt tgtcgtggtg gcgcagcccc ctaccaccta cctcatagct gtccgcttgc
     2581 ctcctcactc catgctgctg ctgcgcctgg agaaagctca ggtgcacggt gtgcctgtgg
     2641 ccctcaggac tgatgactgg gctgtgctgc ccctggtggg ggactacctc cgagggcttg
     2701 cagcccactg agcaatgcca ggtgagactg tacttgtggc tggtgtgaga gcctgccaaa
     2761 ggagcacgtt cttgtagctg ctgccccata aacgcccatt cactgacaac tcctgctggc
     2821 ttgttttctt ttggacccct gttaggagca agctacagac ttccataatt cttgcccaga
     2881 tagtccgaac atgtttctca ctgggtctga cctggcccaa gagccctgtg caacttctca
     2941 tgaaggttgg agcttgaggt tgggcctccc aactctgctc cagctgagct cacacggtga
     3001 gcgagcagcc tggagcaggg gtgactacat agccccttcc tgggtagagc tggttggacc
     3061 taactgtaca gggtgtgcca gaaaggttca gttctgagca aatggagggc ccacatgatc
     3121 tggttcaaaa caacccccca aacttagctt ttaatggcag ctcttaggag atccagtctg
     3181 cttaggaatc tcctcagatt cctgttctca ggcaggtgtt ggtggtacac cttcctccca
     3241 atacttggaa ggcagaggca ggtggattga ttgctgcgtt tgatgccagc ctggcctaca
     3301 gagtgagttc taagacagcc agagctacac agagaaaccc tgtctcaaaa acaaagaact
     3361 tggggctgga gagatggctc agcggttaag agcactgact gctcttccag aggtcctgag
     3421 ttcaattccc agcaaccaca tggtggctca caaccatcta taaagagatc cgatgccctc
     3481 ttctggtgta tctgaagaca gctacagtgt actcatatgt aataaatgaa taaatttaaa
     3541 aaaaaaaaaa a
//
