LOCUS       NM_001172150            2535 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus adaptor related protein complex 1 subunit sigma 3
            (Ap1s3), mRNA.
ACCESSION   NM_001172150
VERSION     NM_001172150.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000009.1.
            
            [WARNING] On Jul 25, 2024 this sequence was replaced by
            NM_001172150.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN12840105, SAMN12840114
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               JAXUCZ010000009.1  88458086-88458199   c
            115-121             JAXUCZ010000009.1  88440096-88440102   c
            122-300             JAXUCZ010000009.1  88417867-88418045   c
            301-409             JAXUCZ010000009.1  88416462-88416570   c
            410-547             JAXUCZ010000009.1  88405886-88406023   c
            548-2535            JAXUCZ010000009.1  88399109-88401096   c
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q34"
     gene            1..2535
                     /gene="Ap1s3"
                     /note="adaptor related protein complex 1 subunit sigma 3"
                     /db_xref="GeneID:367304"
                     /db_xref="RGD:1311772"
     exon            1..114
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
     exon            115..121
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..583
                     /gene="Ap1s3"
                     /note="adaptor related protein complex 1 sigma 3 subunit;
                     adaptor-related protein complex AP-1, sigma 3-like"
                     /codon_start=1
                     /product="AP-1 complex subunit sigma-3"
                     /protein_id="NP_001165621.1"
                     /db_xref="GeneID:367304"
                     /db_xref="RGD:1311772"
                     /translation="MIHFILLFSRQGKLRLQKWYTTLPDKERKKITREIIQTVLSRGH
                     RTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELD
                     IIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEEYMNKPTF"
     exon            122..300
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
     exon            301..409
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
     exon            410..547
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
     exon            548..2535
                     /gene="Ap1s3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcattgtggg aagtagccat ggtctgaggc tggcgcctca cctgtcagcc gcccgggctg
       61 ctacagtctc ttctggccct cgcatcccgg gcgatcgctg ttgtcgggac ccgggactat
      121 gatacatttc atcttgctgt tcagtcgaca agggaagctg cggctgcaga aatggtacac
      181 cacgctccct gacaaagaga ggaagaagat cacccgggag atcatccaga ccgtcctctc
      241 tcgtggacac aggaccagca gtttcattga ctggaaggag ctgaaacttg tttataaaag
      301 gtatgctagt ttatattttt gctgtgcaat agaaaaccaa gacaatgagc tcttgacact
      361 agagattgtt catcgttatg tggagttgct ggataagtac tttggaaatg tctgtgagct
      421 ggacattatc tttaattttg agaaggcata ttttatcctt gacgagttta taataggtgg
      481 agaaattcag gaaacatcca agaaaacagc ggtcaaggcc attgaagact ctgatatgtt
      541 acaagagaca atggaagaat acatgaacaa gccgacattt taagtgtaca gcctacttga
      601 agattctgcg tgcttcatgc tgtgatccta caaacaagca actcctcgaa tccggtctcc
      661 acacagcctc tggcacaaca ccaaaaatga cttaaaggga ttctgtgcta gctagcaaat
      721 gtcaagttgt tgctccatgt ctgtatgata ctgtgtggca atacccacgg tggctccagg
      781 cgattccgat taatggctgc agacacaata gttgcttgtc ttgttttaaa tccttgtggt
      841 atttgtttaa ggcaatttca aatattagtt acaatatgat aatttttgtt gccatttgac
      901 cttctacctg tagaccaaca actgccttgt gataacatac aatttcaatg taaagtgtat
      961 tttatataat aaatgccttt cctaaatgtt taaaaatgta catatgttaa gtttatgtta
     1021 gtagctcaga tttcatacat gatgctaggt atttttttta atatgttcaa tgctactata
     1081 atttcaggtc agatacaatg tatatgactt taatgtcttg aattcaactt ttttttttta
     1141 gaattgggat aaaacttcat tagagatttt aatgtcttag aaggtgctag atcaaggttt
     1201 ttactttgct ttcaattgaa tataagggac atttcagtaa gatggtttct atgaactatt
     1261 tattaaggtg tctagagctc tggagatgaa atgttacagc atctcctgtt attaccataa
     1321 tactgagagg aagagctata tcaatattta tatagcagta attgtgatct ctcctatgat
     1381 tttatatctc atgttccttg tggttttttt tttttaaaga tattttattt tcagatatct
     1441 cattttttta tgagacttaa aaaataattt taatgtaagg tgactgttta aggcttcctt
     1501 agctcacatg tattttcatt gtgaccttca tgggaggtga ctctatttcc tttttttttc
     1561 cccctcttac ccagaaaaac attttctgtt gactgtaatt attgtgacca tgtcaccttc
     1621 atgcatccaa aacaaaagtt ctgagcaccc agaacaaaac accaaaacaa aagcctgagc
     1681 tgatgtgaag tgggaagctt cttggagcct ttgttcctga tgtctgtctt ctgtctgtag
     1741 ttctgcatat gtgttctcag tgttagtgtc aaggtttgct gtcctttgca ttacagtgct
     1801 gcggactctt gtggttttcc taagacaata gtgtacttga ttttgtattc ggagagagct
     1861 ctcgtacagc ggacccttag agaatgtggt tgttcatctc atcaggcata tttaagggaa
     1921 gatggcaaaa ccagtgcaga aggacagaca gacaaactga cccattcctt agtatgacca
     1981 tttatttaaa agcaataatt cagatttcat atgagctaat aactaggctt ttaatagttg
     2041 atttatcttc aaattaatat aattttgata atgtttgttc tttctgaaca tctttgggca
     2101 gtcttcagtt ttgtgtgtta acttttttaa aaagtacggt aaaaattgtt gtttttcaaa
     2161 catttttgta aaactgaact ttctgtaact tcagaggttt tccagttcct ttccattgtt
     2221 tttgaaggaa agtatctttt gagtttcatt aaatgtacta cttatattct ggataattcc
     2281 atatttgatc ttgtctagct tgcacaagga ttcttcctgt cagtctattc atagagaaag
     2341 agatcatatt tatgtgatac attgaagtaa atacagggga cttggggaac agcttacatg
     2401 agctttagtg aaaaatcatg atatgttttc tttattatta taagattcta agacaaagta
     2461 ccaaataaga ggaaaaaata tactgaattt gtataaaaca tccaaataaa aggttaaaaa
     2521 tatgttaatg atgaa
//
