LOCUS       NM_001044239            1926 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus adaptor related protein complex 1 subunit mu 1
            (Ap1m1), mRNA.
ACCESSION   NM_001044239 XM_001068216 XM_240364
VERSION     NM_001044239.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Farias,G.G., Cuitino,L., Guo,X., Ren,X., Jarnik,M., Mattera,R. and
            Bonifacino,J.S.
  TITLE     Signal-mediated, AP-1/clathrin-dependent sorting of transmembrane
            receptors to the somatodendritic domain of hippocampal neurons
  JOURNAL   Neuron 75 (5), 810-823 (2012)
   PUBMED   22958822
  REMARK    GeneRIF: The primary recognition event that underlies
            somatodendritic sorting contributes to the evolving view of AP-1 as
            a global regulator of cell polarity.
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 1926)
  AUTHORS   Delevoye,C., Hurbain,I., Tenza,D., Sibarita,J.B., Uzan-Gafsou,S.,
            Ohno,H., Geerts,W.J., Verkleij,A.J., Salamero,J., Marks,M.S. and
            Raposo,G.
  TITLE     AP-1 and KIF13A coordinate endosomal sorting and positioning during
            melanosome biogenesis
  JOURNAL   J Cell Biol 187 (2), 247-264 (2009)
   PUBMED   19841138
REFERENCE   4  (bases 1 to 1926)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   5  (bases 1 to 1926)
  AUTHORS   Morokuma,Y., Nakamura,N., Kato,A., Notoya,M., Yamamoto,Y.,
            Sakai,Y., Fukuda,H., Yamashina,S., Hirata,Y. and Hirose,S.
  TITLE     MARCH-XI, a novel transmembrane ubiquitin ligase implicated in
            ubiquitin-dependent protein sorting in developing spermatids
  JOURNAL   J Biol Chem 282 (34), 24806-24815 (2007)
   PUBMED   17604280
REFERENCE   6  (bases 1 to 1926)
  AUTHORS   Hoffert,J.D., Pisitkun,T., Wang,G., Shen,R.F. and Knepper,M.A.
  TITLE     Quantitative phosphoproteomics of vasopressin-sensitive renal
            cells: regulation of aquaporin-2 phosphorylation at two sites
  JOURNAL   Proc Natl Acad Sci U S A 103 (18), 7159-7164 (2006)
   PUBMED   16641100
REFERENCE   7  (bases 1 to 1926)
  AUTHORS   Meyer,C., Zizioli,D., Lausmann,S., Eskelinen,E.L., Hamann,J.,
            Saftig,P., von Figura,K. and Schu,P.
  TITLE     mu1A-adaptin-deficient mice: lethality, loss of AP-1 binding and
            rerouting of mannose 6-phosphate receptors
  JOURNAL   EMBO J 19 (10), 2193-2203 (2000)
   PUBMED   10811610
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001044239.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107903.1, SRR26360181.1570055.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               JAXUCZ010000016.1  17636268-17636374   c
            108-264             JAXUCZ010000016.1  17631215-17631371   c
            265-332             JAXUCZ010000016.1  17628973-17629040   c
            333-463             JAXUCZ010000016.1  17627907-17628037   c
            464-611             JAXUCZ010000016.1  17627038-17627185   c
            612-738             JAXUCZ010000016.1  17625872-17625998   c
            739-881             JAXUCZ010000016.1  17624756-17624898   c
            882-953             JAXUCZ010000016.1  17624443-17624514   c
            954-1112            JAXUCZ010000016.1  17624095-17624253   c
            1113-1238           JAXUCZ010000016.1  17622027-17622152   c
            1239-1314           JAXUCZ010000016.1  17621676-17621751   c
            1315-1926           JAXUCZ010000016.1  17620910-17621521   c
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..1926
                     /gene="Ap1m1"
                     /note="adaptor related protein complex 1 subunit mu 1"
                     /db_xref="GeneID:306332"
                     /db_xref="RGD:1307653"
     exon            1..107
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..1337
                     /gene="Ap1m1"
                     /note="mu-adaptin 1; mu1A-adaptin; AP-mu chain family
                     member mu1A; adaptor protein complex AP-1 mu-1 subunit;
                     golgi adaptor HA1/AP1 adaptin mu-1 subunit; clathrin
                     assembly protein complex 1 medium chain 1; adaptor-related
                     protein complex AP-1, mu subunit 1; adaptor protein
                     complex AP-1 subunit mu-1; adaptor-related protein complex
                     1, mu 1 subunit; adapter-related protein complex 1 subunit
                     mu-1; clathrin assembly protein complex 1 mu-1 medium
                     chain 1"
                     /codon_start=1
                     /product="AP-1 complex subunit mu-1"
                     /protein_id="NP_001037704.1"
                     /db_xref="GeneID:306332"
                     /db_xref="RGD:1307653"
                     /translation="MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEG
                     MLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEES
                     IRDNFVIIYELLDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWR
                     SEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV
                     LFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL
                     IWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKW
                     VPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQV
                     RYLKIIEKSGYQALPWVRYITQNGDYQLRTQ"
     exon            108..264
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            265..332
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            333..463
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..611
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            612..738
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            739..881
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            882..953
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1112
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1238
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1314
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1926
                     /gene="Ap1m1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgaacgccgg cagttcctgc cgttgccgcc gccctcggct actgccgagg ccttccaaag
       61 ccgccatgtc cgccagcgcc gtctacgtac tggacctgaa gggcaaggtg ctcatctgca
      121 ggaactaccg tggggatgtg gacatgtcag aggtggagca cttcatgccc attctgatgg
      181 agaaggagga ggagggcatg ctgtcaccta tcttggccca tggtggcgtt cgtttcatgt
      241 ggattaagca caacaacctg tacctggtcg ccacttcaaa aaagaatgct tgtgtgtcgc
      301 tagtattctc cttcctctac aaggtggtgc aggtgttctc tgagtacttt aaggagctgg
      361 aggaggagag catccgagac aactttgtta tcatttatga gcttctggat gagctcatgg
      421 acttcggcta cccgcagacc accgacagca agatcctgca ggagtacatc actcaggaag
      481 gccacaagct ggaaacagga gcccctcggc ccccagccac cgtcaccaat gctgtgtcct
      541 ggcgctcaga aggtatcaag tatcggaaga acgaagtatt cctggacgtc attgaggccg
      601 ttaacctctt ggtcagtgcc aatggcaacg tgctgcgtag tgagatcgtg ggttccatca
      661 agatgcgcgt cttcctctca ggcatgcctg agctacgcct gggtctcaat gacaaagtcc
      721 tcttcgacaa cacgggccga gggaagagca agtcagtgga gctggaggac gtgaagttcc
      781 accagtgtgt gcggttgtca cgttttgaga atgaccgcac aatatccttc attccaccag
      841 acggagaatt cgaactcatg tcctaccgcc tcaacaccca tgtgaagcct ttgatctgga
      901 tcgagtccgt gattgaaaag cattcccaca gccgcattga gtacatggtc aaggccaaga
      961 gccagttcaa gcggcggtca acagccaaca atgtggagat ccacatccca gtccccaatg
     1021 acgccgactc acccaagttc aagaccacgg tggggagtgt caagtgggtc cctgaaaaca
     1081 gtgagatcgt gtggtccatc aaatccttcc cgggtggcaa ggagtacctg atgcgggccc
     1141 acttcggcct tcccagtgtg gaagcggaag acaaggaggg caagcctccc atcagcgtca
     1201 agttcgagat cccctatttc actacctctg gcatccaggt gcgctacctg aaaatcattg
     1261 agaagagcgg gtaccaggcc ctgccctggg tacgctatat cacgcagaat ggagattacc
     1321 agctccggac ccagtgagag gccttggtaa ccagcccagc ccacccagcc tcagggcaca
     1381 cctgccacac tcaccaaaac tgaagctgga gggtggccct ggacgtgcag ccaccctccc
     1441 ctcaagcctg agtagactca cacagaaccc cttccctggt cccattctga tccagggtgg
     1501 gaaggaaggg tctgccagcc tcccccaggg acaagccagc tggagctgag ctcctggtgc
     1561 ctcatgactg gccacccacc accctgtggg cgccatccct gctcaccact ggagcctcct
     1621 tttgttgcca ttttgctgag catgttggtc actgtcgtct gtggctgtcc tgtcaccttt
     1681 ctgtcctgtc ctgtgcagct gcctcctatc cacactggtc cttccctggc aggacagtcg
     1741 ctctcctggg ccagctgtgc ccccttgccc gcccttgacc acatcagtgt tttccccgga
     1801 agggcacatg gcctcagcct ctgccccaaa gtccctgggc agcacaggcc agtctcactg
     1861 tacaagacct cgtcgtcctc cacccatgtg tgacagtgac attaaagtct atttgttaca
     1921 tgtgca
//
