LOCUS       NM_001134910            1608 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus annexin A13 (Anxa13), mRNA.
ACCESSION   NM_001134910 XM_001068572 XM_343245
VERSION     NM_001134910.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Fernandez-Lizarbe,S., Lecona,E., Santiago-Gomez,A., Olmo,N.,
            Lizarbe,M.A. and Turnay,J.
  TITLE     Structural and lipid-binding characterization of human annexin A13a
            reveals strong differences with its long A13b isoform
  JOURNAL   Biol Chem 398 (3), 359-371 (2017)
   PUBMED   27676605
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Bohm,D., Keller,K., Pieter,J., Boehm,N., Wolters,D., Siggelkow,W.,
            Lebrecht,A., Schmidt,M., Kolbl,H., Pfeiffer,N. and Grus,F.H.
  TITLE     Comparison of tear protein levels in breast cancer patients and
            healthy controls using a de novo proteomic approach
  JOURNAL   Oncol Rep 28 (2), 429-438 (2012)
   PUBMED   22664934
REFERENCE   3  (bases 1 to 1608)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 1608)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   5  (bases 1 to 1608)
  AUTHORS   Turnay,J., Lecona,E., Fernandez-Lizarbe,S., Guzman-Aranguez,A.,
            Fernandez,M.P., Olmo,N. and Lizarbe,M.A.
  TITLE     Structure-function relationship in annexin A13, the founder member
            of the vertebrate family of annexins
  JOURNAL   Biochem J 389 (Pt 3), 899-911 (2005)
   PUBMED   15813707
REFERENCE   6  (bases 1 to 1608)
  AUTHORS   Lecat,S., Verkade,P., Thiele,C., Fiedler,K., Simons,K. and
            Lafont,F.
  TITLE     Different properties of two isoforms of annexin XIII in MDCK cells
  JOURNAL   J Cell Sci 113 (Pt 14), 2607-2618 (2000)
   PUBMED   10862718
REFERENCE   7  (bases 1 to 1608)
  AUTHORS   Lafont,F., Lecat,S., Verkade,P. and Simons,K.
  TITLE     Annexin XIIIb associates with lipid microdomains to function in
            apical delivery
  JOURNAL   J Cell Biol 142 (6), 1413-1427 (1998)
   PUBMED   9744874
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before Sep 14, 2008 this sequence version replaced
            XM_001068572.1, XM_343245.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.20825.1,
                                           SRR26643293.41164.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                JAXUCZ010000007.1  91826350-91826386   c
            38-122              JAXUCZ010000007.1  91804025-91804109   c
            123-217             JAXUCZ010000007.1  91795979-91796073   c
            218-388             JAXUCZ010000007.1  91792574-91792744   c
            389-422             JAXUCZ010000007.1  91787939-91787972   c
            423-502             JAXUCZ010000007.1  91787755-91787834   c
            503-571             JAXUCZ010000007.1  91785986-91786054   c
            572-673             JAXUCZ010000007.1  91784937-91785038   c
            674-749             JAXUCZ010000007.1  91780924-91780999   c
            750-862             JAXUCZ010000007.1  91777413-91777525   c
            863-1608            JAXUCZ010000007.1  91773844-91774589   c
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..1608
                     /gene="Anxa13"
                     /note="annexin A13"
                     /db_xref="GeneID:362915"
                     /db_xref="RGD:1307545"
     exon            1..37
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..982
                     /gene="Anxa13"
                     /codon_start=1
                     /product="annexin A13"
                     /protein_id="NP_001128382.1"
                     /db_xref="GeneID:362915"
                     /db_xref="RGD:1307545"
                     /translation="MGNHHAKERSHHHHHGFDADRDAKKLYKACKGMGTDEAAVIEVL
                     SSRTSEQRQQIKQKYKEKYSKDLEEVLKSELSGNFEKAALALLDRPNEYAARQLQKAM
                     KGLGTDEAMLIEILCTRSNKEIVDIKEAYQRLFGRSLESDVKDDTSGNLRKILVSLLQ
                     AGRDEEDTVDKELAGQDAKDLYDAGEGRWGTDELAFNEVLAKRSYKQLRATFQAYQIL
                     IGKDMEEAIEEETSGDLKKAYLTIVRCAQDLEGYFADLLYKAMKGVGTDEETLIRIIV
                     TRAEVDLQGIKAKFQEKYQKSLSDMVHSDTSGDFRKLLVALLH"
     exon            38..122
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            123..217
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            218..388
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            389..422
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            423..502
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            503..571
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            572..673
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            674..749
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            750..862
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
     exon            863..1608
                     /gene="Anxa13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagccgtctc agagaagagg agatggggaa tcatcatgcc aaagagagaa gccatcacca
       61 tcaccatggc ttcgatgccg accgagatgc caaaaagtta tacaaagcct gcaaaggaat
      121 gggaacggat gaggcagccg tcattgaagt cttatctagc aggacatcgg agcagaggca
      181 gcagataaag cagaagtaca aggagaagta cagtaaggac ttagaggagg tgctcaagag
      241 tgaactgagt ggaaacttcg agaaggcagc tttggccctt ctggatcgac ctaatgagta
      301 tgcagcacgg cagctgcaga aggctatgaa gggcctaggc actgatgagg ccatgctcat
      361 agagatccta tgcacaagaa gcaacaagga aattgtcgac atcaaagaag cttaccaaag
      421 gttatttggc aggagccttg aatctgatgt caaagacgac acaagtggaa acctgagaaa
      481 gattctggtg tccctgctcc aggccggtcg tgatgaagaa gacactgtgg acaaagaatt
      541 ggctggtcag gatgccaaag atttgtatga tgcaggcgaa ggccgatggg gtaccgacga
      601 gcttgccttc aatgaagtcc tggccaagag gagctacaag cagttgcgtg ctacctttca
      661 ggcttaccag atcctcattg gcaaagacat ggaagaagcc atcgaagaag agacgtcggg
      721 agacttgaag aaggcctatt taactatagt gagatgtgcc caggaccttg agggctattt
      781 tgctgaccta ctatacaagg ccatgaaggg tgtggggaca gacgaggaga cgttaattcg
      841 catcattgtg accagagctg aggttgacct gcaggggata aaagccaagt tccaggagaa
      901 gtatcagaag tcgctctctg acatggttca ctcagatacc tctggggact tccgaaaact
      961 gctggtagct ctcttgcact gatccaagcc cgaacgaatc aaatttgcaa atgagcgaaa
     1021 acccttcacc ccctctggac tgtctgctca tcagtttaaa gggagcccga ggcccagcag
     1081 ctgaagtcag gagcagcgtc ctccaagggc ttgaacagcc ttgaatgctg gcttagcagg
     1141 aacctaaagt gcctccagcc tccctttagc atttgaagcg aatgctttct aagcacaaat
     1201 gaaaccagca gttggtgggg gagggggggc tgaacattta taataaaatg tttagaaaat
     1261 tatatgcctc ccagatgccc agagccaaag cagagattaa atggctaaaa cggaatagag
     1321 gcaagattaa acggtttgtt cgtttccctt ctgtgcattc agtttcaaag cctttccgtt
     1381 aattacggtg atggtctgcg cctccgtcag ctgctttgcc aaattggctt gatgaacttg
     1441 ggatctcgcc tgggaaacag agagctcggg aaatccaaat ggactggggg attgcaaacg
     1501 tctattaaca atcaccgggg atagcggtca aggccggcat cgaggaaaga gacggcctgc
     1561 ctatgtgaaa tgcaaataga agtaaaactc actgacctcg cctggttc
//
