LOCUS       XM_039094754            3231 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus anoctamin 9 (Ano9), transcript variant
            X4, mRNA.
ACCESSION   XM_039094754
VERSION     XM_039094754.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094754.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3231
                     /gene="Ano9"
                     /note="anoctamin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
     CDS             714..2528
                     /gene="Ano9"
                     /codon_start=1
                     /product="anoctamin-9 isoform X3"
                     /protein_id="XP_038950682.1"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
                     /translation="MLPASPSSHTPLPYQVLRPMGRAALTGKLFHREYFGEKVALYFT
                     WLGWYTYMLVPAAVVGLIVFLSGFALFDSSQISKEICSADDIFMCPLGDNSRRYQRLS
                     EMCTFAKLTHLFDNEGTVIFAIFMALWATVFLEIWKRKRAREVQSWELYEWDEEEEEM
                     ALELINSPHYELKKHHHSYLSSTIILILSLFMICLMIGMAHLLVVYRVLAAALFSSFL
                     EQQVTTAVVVTGAVVHYVIIVIMTKVNKCVALKLCKFEEPRTFSEQESKFTVKFFILQ
                     FFAHFSSLIYIAFILGRINGHPGKSTRLAGLWKLEECHLSGCMMDLFIQMAIIMGLKQ
                     TLSNCIEYLYPLLAHKCRSVQAYRHGRKSKDPELAEWQRNYHMNPVNTFSLFDEFMEM
                     MIQYGFTTIFVAAFPLAPLLALFSNLVEIRLDAIKMVRLQRRLVPRKAKDIGTWLQVL
                     ETIGVLAVIANGMVIAFTSEFIPRVVYKYHYGPCRKNQTFTDDCLKDYVNHSLSVFYT
                     KDFQDHGRMEGQENVTVCRYRDYRNDHDYNLSEQFWFILAIRLAFVILFEHVALCIKL
                     IAAWFVPDVPQSVKNEVLEEKYQRIRGRMCFSSRSTDV"
ORIGIN      
        1 tccacagtga cacgcctact ccaacaaggc cacacccact ccaacagggc cacacccact
       61 tcaacagggc cacacctcct aatagagaga ctgtctgggc caagcatata ccatcacaga
      121 tacctcgatg ggggcaaaac aagacagact tgtgtggggg ggggattgcc ctgtgttcac
      181 aagttgacta tctcaggcac ttaagctgta tctgagtatg gctccacaag agcctgtgtg
      241 gcctcaggca agttacccta acctctgaac atcagtttcc acagaagcag aatcactcat
      301 agacatgtaa acagaatccg aattgtgaac tttgtcgtga acagcaagaa gagactcagt
      361 ggtgagctca gatgggcagg tcggtggctg aggagggtgc tgctgtgggc tggattctcc
      421 tatcctccat tgctttctga ttgaggcacc ctataaccct agacaccttt gaggatctgg
      481 tgaaggatgg ggtttttgag accatgtttc ttctgcacaa gggggaagag gacctgagca
      541 gagaatgggc tcagtggaga aatgtgttcc agccacagcc aattgataaa atcaggtaat
      601 accacaccga gcagctcacc tgtgggccac agacacatct gtgtttaaag cagataacct
      661 ggggcccagc caatccagtc ctaactcaca gagacagtcc cccacttaca ccgatgctac
      721 cagcttcacc ttcttctcac acacccctac cctaccaggt actgaggcca atggggaggg
      781 cggccttgac ggggaagctt ttccacaggg aatactttgg agagaaggtg gctctgtact
      841 tcacctggct tggctggtac acctacatgc tcgtgcctgc tgctgtggtg ggcctcatcg
      901 tctttctgag tggctttgcc ctgtttgatt ccagccagat cagcaaagag atctgtagtg
      961 ccgatgacat cttcatgtgc cctctcggcg acaacagtcg cagataccag cggctctcag
     1021 agatgtgcac ttttgcaaag ctcacgcatc tcttcgacaa cgagggcact gtgatatttg
     1081 ccatctttat ggctctgtgg gctacggtct tcctggagat ctggaagcga aagcgtgccc
     1141 gtgaggtcca gagctgggaa ctgtatgagt gggatgagga agaggaagag atggccctgg
     1201 agctcatcaa ctctccgcat tatgagctga aaaagcacca tcattcctat ctgagcagca
     1261 ctatcatcct gatcctgtcc ctgttcatga tttgtttgat gattggcatg gctcatttgc
     1321 tggttgtcta ccgagtgctg gctgctgccc tcttcagcag cttcctggag cagcaggtga
     1381 ccaccgctgt ggtggtgaca ggggcggtgg tacattatgt aatcatcgtc attatgacta
     1441 aggtcaacaa atgtgtagcc ctgaagcttt gtaaattcga ggaacccagg accttttcag
     1501 agcaagagag caagttcact gtcaagttct tcatcctgca gttcttcgcc cacttctcct
     1561 cgctcattta cattgccttc attctgggca ggatcaatgg tcaccctggg aaatccacgc
     1621 gcctggctgg cctgtggaag ctggaggagt gccatctcag tggctgcatg atggacctgt
     1681 tcatccagat ggccatcatc atgggcctga agcagacgct gagcaactgc attgagtacc
     1741 tgtacccgtt gttggcccat aaatgccgct cagtgcaggc ttacagacat ggtcgcaagt
     1801 ccaaagaccc agaactggcg gagtggcagc ggaactacca catgaatccg gtcaacacct
     1861 tcagcctctt tgatgagttc atggagatga tgatccagta tggcttcacc accatctttg
     1921 tggccgcgtt cccgctcgcg cccctgttgg cgctcttcag caaccttgtg gagatccgcc
     1981 tggatgccat caagatggtc agactacagc ggcgcctggt tcctcgcaag gctaaggaca
     2041 tagggacctg gctgcaggta ctggagacca ttggagtgct ggcagtcatt gccaatggaa
     2101 tggtcattgc cttcacctcc gagttcatcc ccagagtagt ctacaagtac cattatggcc
     2161 cgtgcagaaa gaatcagacc ttcacagatg actgcctcaa ggactatgtt aaccacagct
     2221 tatctgtctt ctacaccaaa gacttccagg accatggcag gatggaaggc caagagaatg
     2281 tgactgtgtg caggtaccgg gactaccgaa atgaccacga ctacaacctc tctgagcagt
     2341 tctggttcat tttggccatc cggctggctt ttgtcatcct ctttgagcat gtcgccctgt
     2401 gcatcaagct cattgctgcc tggtttgtgc ctgatgtgcc ccagtcagtg aagaatgagg
     2461 ttctggagga gaagtatcag aggattcgtg gaaggatgtg cttcagttcc aggagcacgg
     2521 atgtatagac aacccggggc aggtggagaa atgccgcttt ccaggagcct ggactaagaa
     2581 gaagtcccca cctctacagt ttgcctctgt ccatagcaat gcatacgcat gttttgaggg
     2641 aggctgtaaa atggtccgtg tatatgtagg gtcctggatg gtctacataa atgttcgtga
     2701 atgaaggcca taggagggcc ttgaatatat gtagatgtat ataggcatcc taggaagccc
     2761 atgtatatgt gttaatcaca ggagactctt gtatatgtcg ggggtccctg aaatgccatg
     2821 tatatttagg ttatttatga acagcacaga tgtgcctgtg gggtttgctt caacttttct
     2881 ggggttcaga ttggtacaga cctgacttga agctcctgag tgaccctagt acccatagaa
     2941 ttgctggctg ctcataaaac cctcgtgcag tgaaattagc ccaagttcca tggacctcct
     3001 ggctcttggg cctcagatct tgcctgctct gtggcctctt gcttggtaga aggtagagac
     3061 taacttccgg cccctccctc ccccacatta acctggatcc ccacagccgg caaaactttt
     3121 tttttttttt aaagatttta tttatttact gtatgtatgt gagtacactg tcactgtctt
     3181 cagacacacc agaagagggc atcagatctc attacagatg gttgtgagcc a
//
