LOCUS       XM_039094743            2305 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus anoctamin 9 (Ano9), transcript variant
            X1, mRNA.
ACCESSION   XM_039094743
VERSION     XM_039094743.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2305
                     /gene="Ano9"
                     /note="anoctamin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
     CDS             32..2305
                     /gene="Ano9"
                     /codon_start=1
                     /product="anoctamin-9 isoform X1"
                     /protein_id="XP_038950671.1"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
                     /translation="MFLRVLCWVPAPHLFPSCVLCWLPDLHSLLSVFRVLFLSHTLFL
                     QPEASDQWDCVLVADLQTQKSQKHVQRQQQFLEKLERNGFHFKVLKDQKKVFFGIRAD
                     SAVIDMYRTLLMKPEDPRSRAKQNFNIATTRIRIVNFVVNSKKRLSDTFEDLVKDGVF
                     ETMFLLHKGEEDLSREWAQWRNVFQPQPIDKIREYFGEKVALYFTWLGWYTYMLVPAA
                     VVGLIVFLSGFALFDSSQISKEICSADDIFMCPLGDNSRRYQRLSEMCTFAKLTHLFD
                     NEGTVIFAIFMALWATVFLEIWKRKRAREVQSWELYEWDEEEEEMALELINSPHYELK
                     KHHHSYLSSTIILILSLFMICLMIGMAHLLVVYRVLAAALFSSFLEQQVTTAVVVTGA
                     VVHYVIIVIMTKVNKCVALKLCKFEEPRTFSEQESKFTVKFFILQFFAHFSSLIYIAF
                     ILGRINGHPGKSTRLAGLWKLEECHLSGCMMDLFIQMAIIMGLKQTLSNCIEYLYPLL
                     AHKCRSVQAYRHGRKSKDPELAEWQRNYHMNPVNTFSLFDEFMEMMIQYGFTTIFVAA
                     FPLAPLLALFSNLVEIRLDAIKMVRLQRRLVPRKAKDIGTWLQVLETIGVLAVIANGM
                     VIAFTSEFIPRVVYKYHYGPCRKNQTFTDDCLKDYVNHSLSVFYTKDFQDHGRMEGQE
                     NVTVCRYRDYRNDHDYNLSEQFWFILAIRLAFVILFEHVALCIKLIAAWFVPDVPQSV
                     KNEVLEEKYQRIRGRMW"
ORIGIN      
        1 tgtgtgtggt tatggtccta cacctccttc catgttcctt cgtgttctct gttgggttcc
       61 cgccccacac cttttcccat cctgtgtctt gtgctggctt ccagatttac attccctctt
      121 atctgtgttc agggttctgt ttctatccca taccttattc ctccagcctg aggcctctga
      181 tcaatgggac tgtgtcctgg tggctgatct ccagacccag aaaagtcaga agcatgttca
      241 gaggcaacaa cagttcctag aaaaactcga gaggaatggt ttccacttca aggtattaaa
      301 ggaccagaag aaggtgttct ttgggatccg agccgacagt gctgtcattg acatgtaccg
      361 gactctcctc atgaagcctg aagatcctag gtccagagcc aagcagaact tcaacatagc
      421 taccacaaga atccgaattg tgaactttgt cgtgaacagc aagaagagac tcagtgacac
      481 ctttgaggat ctggtgaagg atggggtttt tgagaccatg tttcttctgc acaaggggga
      541 agaggacctg agcagagaat gggctcagtg gagaaatgtg ttccagccac agccaattga
      601 taaaatcagg gaatactttg gagagaaggt ggctctgtac ttcacctggc ttggctggta
      661 cacctacatg ctcgtgcctg ctgctgtggt gggcctcatc gtctttctga gtggctttgc
      721 cctgtttgat tccagccaga tcagcaaaga gatctgtagt gccgatgaca tcttcatgtg
      781 ccctctcggc gacaacagtc gcagatacca gcggctctca gagatgtgca cttttgcaaa
      841 gctcacgcat ctcttcgaca acgagggcac tgtgatattt gccatcttta tggctctgtg
      901 ggctacggtc ttcctggaga tctggaagcg aaagcgtgcc cgtgaggtcc agagctggga
      961 actgtatgag tgggatgagg aagaggaaga gatggccctg gagctcatca actctccgca
     1021 ttatgagctg aaaaagcacc atcattccta tctgagcagc actatcatcc tgatcctgtc
     1081 cctgttcatg atttgtttga tgattggcat ggctcatttg ctggttgtct accgagtgct
     1141 ggctgctgcc ctcttcagca gcttcctgga gcagcaggtg accaccgctg tggtggtgac
     1201 aggggcggtg gtacattatg taatcatcgt cattatgact aaggtcaaca aatgtgtagc
     1261 cctgaagctt tgtaaattcg aggaacccag gaccttttca gagcaagaga gcaagttcac
     1321 tgtcaagttc ttcatcctgc agttcttcgc ccacttctcc tcgctcattt acattgcctt
     1381 cattctgggc aggatcaatg gtcaccctgg gaaatccacg cgcctggctg gcctgtggaa
     1441 gctggaggag tgccatctca gtggctgcat gatggacctg ttcatccaga tggccatcat
     1501 catgggcctg aagcagacgc tgagcaactg cattgagtac ctgtacccgt tgttggccca
     1561 taaatgccgc tcagtgcagg cttacagaca tggtcgcaag tccaaagacc cagaactggc
     1621 ggagtggcag cggaactacc acatgaatcc ggtcaacacc ttcagcctct ttgatgagtt
     1681 catggagatg atgatccagt atggcttcac caccatcttt gtggccgcgt tcccgctcgc
     1741 gcccctgttg gcgctcttca gcaaccttgt ggagatccgc ctggatgcca tcaagatggt
     1801 cagactacag cggcgcctgg ttcctcgcaa ggctaaggac atagggacct ggctgcaggt
     1861 actggagacc attggagtgc tggcagtcat tgccaatgga atggtcattg ccttcacctc
     1921 cgagttcatc cccagagtag tctacaagta ccattatggc ccgtgcagaa agaatcagac
     1981 cttcacagat gactgcctca aggactatgt taaccacagc ttatctgtct tctacaccaa
     2041 agacttccag gaccatggca ggatggaagg ccaagagaat gtgactgtgt gcaggtaccg
     2101 ggactaccga aatgaccacg actacaacct ctctgagcag ttctggttca ttttggccat
     2161 ccggctggct tttgtcatcc tctttgagca tgtcgccctg tgcatcaagc tcattgctgc
     2221 ctggtttgtg cctgatgtgc cccagtcagt gaagaatgag gttctggagg agaagtatca
     2281 gaggattcgt ggaaggatgt ggtag
//
