LOCUS       XM_006230589            3540 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus anoctamin 9 (Ano9), transcript variant
            X2, mRNA.
ACCESSION   XM_006230589
VERSION     XM_006230589.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230589.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006230589.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3540
                     /gene="Ano9"
                     /note="anoctamin 9; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
     CDS             591..2834
                     /gene="Ano9"
                     /codon_start=1
                     /product="anoctamin-9 isoform X2"
                     /protein_id="XP_006230651.1"
                     /db_xref="GeneID:499287"
                     /db_xref="RGD:1560565"
                     /translation="MQVDESLQILVGSEGDHLPLMEMGSCKPEASDQWDCVLVADLQT
                     QKSQKHVQRQQQFLEKLERNGFHFKVLKDQKKVFFGIRADSAVIDMYRTLLMKPEDPR
                     SRAKQNFNIATTRIRIVNFVVNSKKRLSDTFEDLVKDGVFETMFLLHKGEEDLSREWA
                     QWRNVFQPQPIDKIREYFGEKVALYFTWLGWYTYMLVPAAVVGLIVFLSGFALFDSSQ
                     ISKEICSADDIFMCPLGDNSRRYQRLSEMCTFAKLTHLFDNEGTVIFAIFMALWATVF
                     LEIWKRKRAREVQSWELYEWDEEEEEMALELINSPHYELKKHHHSYLSSTIILILSLF
                     MICLMIGMAHLLVVYRVLAAALFSSFLEQQVTTAVVVTGAVVHYVIIVIMTKVNKCVA
                     LKLCKFEEPRTFSEQESKFTVKFFILQFFAHFSSLIYIAFILGRINGHPGKSTRLAGL
                     WKLEECHLSGCMMDLFIQMAIIMGLKQTLSNCIEYLYPLLAHKCRSVQAYRHGRKSKD
                     PELAEWQRNYHMNPVNTFSLFDEFMEMMIQYGFTTIFVAAFPLAPLLALFSNLVEIRL
                     DAIKMVRLQRRLVPRKAKDIGTWLQVLETIGVLAVIANGMVIAFTSEFIPRVVYKYHY
                     GPCRKNQTFTDDCLKDYVNHSLSVFYTKDFQDHGRMEGQENVTVCRYRDYRNDHDYNL
                     SEQFWFILAIRLAFVILFEHVALCIKLIAAWFVPDVPQSVKNEVLEEKYQRIRGRMCF
                     SSRSTDV"
ORIGIN      
        1 agcttcagta tcctcaggct gcttgctcca cacactgcct tctccaagca gctgtctcag
       61 tccagatgca cagcagggct cacagtctca gggtcacagg tgcccaggaa tgagaagtca
      121 gtcctttggg gctctatctt gctgtccctt tgcctttctc ctctgtgcat ttggaatgaa
      181 ctctgcaggt gtcgtggaga caggtggtac tgagtacctt tctattatta aggtcgtcta
      241 tgtcaccatt ttctctcgaa ttggggtgcc atggactctg ccttgcagcc aggacatccc
      301 tgtagggaag gtgataggaa acccaggaga gagctacagc gctcttctgc ccccttgctc
      361 cacccttacc cttgaaagga aggtgttggg gtctctggac actggaaggg cttttcttgg
      421 cgggttttgc tactggctcc tccccagcat aacttgggca agcaatcaga ggagtgggcg
      481 gggcaaacca cacacggaag tcaggtaaca gccgggagcc cgcagctact ctcatacctg
      541 ccaatgccag catccagagc cccgcgttga ctaagggacc agtcaccagc atgcaggtcg
      601 atgagagcct ccagatcttg gtggggtcag aaggggacca cttgccattg atggaaatgg
      661 gtagttgtaa gcctgaggcc tctgatcaat gggactgtgt cctggtggct gatctccaga
      721 cccagaaaag tcagaagcat gttcagaggc aacaacagtt cctagaaaaa ctcgagagga
      781 atggtttcca cttcaaggta ttaaaggacc agaagaaggt gttctttggg atccgagccg
      841 acagtgctgt cattgacatg taccggactc tcctcatgaa gcctgaagat cctaggtcca
      901 gagccaagca gaacttcaac atagctacca caagaatccg aattgtgaac tttgtcgtga
      961 acagcaagaa gagactcagt gacacctttg aggatctggt gaaggatggg gtttttgaga
     1021 ccatgtttct tctgcacaag ggggaagagg acctgagcag agaatgggct cagtggagaa
     1081 atgtgttcca gccacagcca attgataaaa tcagggaata ctttggagag aaggtggctc
     1141 tgtacttcac ctggcttggc tggtacacct acatgctcgt gcctgctgct gtggtgggcc
     1201 tcatcgtctt tctgagtggc tttgccctgt ttgattccag ccagatcagc aaagagatct
     1261 gtagtgccga tgacatcttc atgtgccctc tcggcgacaa cagtcgcaga taccagcggc
     1321 tctcagagat gtgcactttt gcaaagctca cgcatctctt cgacaacgag ggcactgtga
     1381 tatttgccat ctttatggct ctgtgggcta cggtcttcct ggagatctgg aagcgaaagc
     1441 gtgcccgtga ggtccagagc tgggaactgt atgagtggga tgaggaagag gaagagatgg
     1501 ccctggagct catcaactct ccgcattatg agctgaaaaa gcaccatcat tcctatctga
     1561 gcagcactat catcctgatc ctgtccctgt tcatgatttg tttgatgatt ggcatggctc
     1621 atttgctggt tgtctaccga gtgctggctg ctgccctctt cagcagcttc ctggagcagc
     1681 aggtgaccac cgctgtggtg gtgacagggg cggtggtaca ttatgtaatc atcgtcatta
     1741 tgactaaggt caacaaatgt gtagccctga agctttgtaa attcgaggaa cccaggacct
     1801 tttcagagca agagagcaag ttcactgtca agttcttcat cctgcagttc ttcgcccact
     1861 tctcctcgct catttacatt gccttcattc tgggcaggat caatggtcac cctgggaaat
     1921 ccacgcgcct ggctggcctg tggaagctgg aggagtgcca tctcagtggc tgcatgatgg
     1981 acctgttcat ccagatggcc atcatcatgg gcctgaagca gacgctgagc aactgcattg
     2041 agtacctgta cccgttgttg gcccataaat gccgctcagt gcaggcttac agacatggtc
     2101 gcaagtccaa agacccagaa ctggcggagt ggcagcggaa ctaccacatg aatccggtca
     2161 acaccttcag cctctttgat gagttcatgg agatgatgat ccagtatggc ttcaccacca
     2221 tctttgtggc cgcgttcccg ctcgcgcccc tgttggcgct cttcagcaac cttgtggaga
     2281 tccgcctgga tgccatcaag atggtcagac tacagcggcg cctggttcct cgcaaggcta
     2341 aggacatagg gacctggctg caggtactgg agaccattgg agtgctggca gtcattgcca
     2401 atggaatggt cattgccttc acctccgagt tcatccccag agtagtctac aagtaccatt
     2461 atggcccgtg cagaaagaat cagaccttca cagatgactg cctcaaggac tatgttaacc
     2521 acagcttatc tgtcttctac accaaagact tccaggacca tggcaggatg gaaggccaag
     2581 agaatgtgac tgtgtgcagg taccgggact accgaaatga ccacgactac aacctctctg
     2641 agcagttctg gttcattttg gccatccggc tggcttttgt catcctcttt gagcatgtcg
     2701 ccctgtgcat caagctcatt gctgcctggt ttgtgcctga tgtgccccag tcagtgaaga
     2761 atgaggttct ggaggagaag tatcagagga ttcgtggaag gatgtgcttc agttccagga
     2821 gcacggatgt atagacaacc cggggcaggt ggagaaatgc cgctttccag gagcctggac
     2881 taagaagaag tccccacctc tacagtttgc ctctgtccat agcaatgcat acgcatgttt
     2941 tgagggaggc tgtaaaatgg tccgtgtata tgtagggtcc tggatggtct acataaatgt
     3001 tcgtgaatga aggccatagg agggccttga atatatgtag atgtatatag gcatcctagg
     3061 aagcccatgt atatgtgtta atcacaggag actcttgtat atgtcggggg tccctgaaat
     3121 gccatgtata tttaggttat ttatgaacag cacagatgtg cctgtggggt ttgcttcaac
     3181 ttttctgggg ttcagattgg tacagacctg acttgaagct cctgagtgac cctagtaccc
     3241 atagaattgc tggctgctca taaaaccctc gtgcagtgaa attagcccaa gttccatgga
     3301 cctcctggct cttgggcctc agatcttgcc tgctctgtgg cctcttgctt ggtagaaggt
     3361 agagactaac ttccggcccc tccctccccc acattaacct ggatccccac agccggcaaa
     3421 actttttttt ttttttaaag attttattta tttactgtat gtatgtgagt acactgtcac
     3481 tgtcttcaga cacaccagaa gagggcatca gatctcatta cagatggttg tgagccacca
//
