LOCUS       XM_017591259            2789 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat and ubiquitin domain
            containing 1 (Ankub1), transcript variant X1, mRNA.
ACCESSION   XM_017591259
VERSION     XM_017591259.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591259.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591259.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2789
                     /gene="Ankub1"
                     /note="ankyrin repeat and ubiquitin domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:100361272"
                     /db_xref="RGD:2320491"
     CDS             671..2320
                     /gene="Ankub1"
                     /codon_start=1
                     /product="protein ANKUB1 isoform X1"
                     /protein_id="XP_017446748.1"
                     /db_xref="GeneID:100361272"
                     /db_xref="RGD:2320491"
                     /translation="MPYRKGGRKKRERGRGTLYWSANKDTDCFLKMSLLFKDYFHIPL
                     SEDKQGRWYLELTYAGAALKNNWSLSDVGISFCSTLKCFVKKEDKPTLYVFNAVTQET
                     MAIKENMSILDRKVSDLRMLVTLSCGFPVSVYCLRTPAGLEMYDCNTLKDYQTDIGTT
                     LRLDVWDGWKEFLMGCLLGQKPKVQRYLSKEGPVLKYQKRVALYIAAFHGHTELTEWA
                     LKQGAQPHEAVGVHPCRAWCHEALHTDVSNCPIHAAAEAGQLLILKAFVNFSVLCLEC
                     KNAAGQSPLAIASKHQHKDCVLYLLSKIWSTVSFLKLSVPMRIYIKIKQWILRAQTRR
                     CHKSQPSRARVSGAKVGDTVMVDGFTKPKMTSKSWYKAEDKSWHTAQSKLPPCKQQPS
                     RKPIGSLPMSQHDTKKQIFTFPSLVDAKNFSEVQSYQQENQKKIAAPARKEKNIKNPY
                     LPQVPLPPVSRVHYAHPQFYCTPPSGDCLLRSLFKSFSEHSGRTPRENAIYCLAVASA
                     FKEKRWLQQLEIARVLAKRSISNLTVKGGPAKCENYPESVL"
ORIGIN      
        1 ctctctctct ctctctctct ctctctctct ctcaaaaaaa agtgtattgg ctttaaatat
       61 aatcttcaag ttataaaaat aaaatttatg atatagagtg acatagggta tggggcttta
      121 ttaatatttg ctaataggtt ctaacaacca cttaacaact agtatacctt tgaattagtg
      181 ataagtatac atgatattct gaaatatctg taacaacagt aacataaaat gaaagtaaat
      241 gtaatttgaa ttggcaacag acatagctgc agataatgac ctaattaaac agaattaaag
      301 agggaaaaat ctcaatttca cttagagtta acaaaaataa atttgtaggg actggggaga
      361 tagtttagtg ttaagcaatg gctattcttt caaagaacct gggttcactt cccaatactc
      421 agatgagagc tgtaaaacca gggtctccaa tgcccccttc tagcatctcc aggttccaag
      481 cacatatgtg ttagacagac atgtaagcaa agcactcaca cacataaaat gcaaataata
      541 ctttttttta aaaatggagg tgtagggttt ttttctcccc agctaaaatc tatttataag
      601 tttatggtat taataggatc aaaataaaga attctatcca atttcttctc tgtgttctaa
      661 aacaagtata atgccataca ggaagggagg aagaaagaag agagaaaggg ggaggggaac
      721 attgtactgg tctgctaata aagacacaga ctgttttctt aagatgtcat tgctctttaa
      781 ggattatttc cacattcctc tttctgaaga caaacaaggc aggtggtatc ttgagctgac
      841 atatgctgga gctgccctaa agaataactg gagtctgtca gatgttggaa tatctttctg
      901 ttcaacgctc aaatgctttg ttaagaaaga agacaagccc actctctatg tgttcaatgc
      961 tgtgacccag gagaccatgg ccatcaagga gaacatgtct atcctggata ggaaggtgtc
     1021 tgacctgaga atgctggtaa ctctgagctg tggcttccct gtgagtgtct actgtctccg
     1081 gacaccagcg ggactggaga tgtatgactg caacaccctc aaggattacc agacggatat
     1141 cggcacaaca cttcgtttgg atgtctggga tggatggaag gaatttctca tgggatgtct
     1201 tcttgggcaa aaacctaaag tccaacgcta cttatcaaaa gaaggaccag tcctcaagta
     1261 ccagaaaagg gtagccctgt acatcgctgc ttttcatgga cacactgagc ttactgagtg
     1321 ggctctgaag cagggtgcgc agccccatga ggcagtgggc gttcaccctt gccgagcatg
     1381 gtgccacgaa gcccttcaca cagatgtctc taactgtcct attcatgcgg ctgcagaagc
     1441 tggccagctg ttaattctga aggcctttgt caacttcagt gtcctgtgcc tggaatgtaa
     1501 gaacgcggca gggcaatctc ccctggccat tgcgtcgaaa caccagcata aagactgtgt
     1561 gctgtattta ctgagcaaaa tatggtccac tgtttctttt ctaaaacttt cggtcccaat
     1621 gaggatttat attaaaataa agcaatggat tctccgagct cagactcgtc ggtgccataa
     1681 aagccagcct agcagagcca gggtctctgg ggcaaaggtt ggagacactg tgatggtgga
     1741 tggtttcacc aagcccaaaa tgacttccaa gagctggtac aaggctgaag acaagagttg
     1801 gcataccgcc cagagtaaac taccaccctg caagcaacag ccaagcagga aacctattgg
     1861 ttccttacca atgtcacagc acgacaccaa aaaacaaatc ttcacatttc catccttagt
     1921 agatgcaaag aacttttcag aagtgcaaag ttatcaacaa gaaaaccaga aaaaaatcgc
     1981 tgccccggct agaaaagaaa agaacatcaa aaatccctat ctcccccagg tccctctccc
     2041 tccagtttca agagtgcatt atgcacaccc acagttctat tgcactccgc ccagtggtga
     2101 ttgtttgctg aggtccctct tcaagtcttt ctcagagcac agtgggagga ctccacggga
     2161 gaatgccatc tactgcttag ctgtggcaag tgcctttaaa gagaagcgat ggcttcagca
     2221 gttagaaata gcaagagtcc tagccaagag aagcatttct aacctgactg tcaaaggagg
     2281 tccagcaaag tgtgaaaact acccagaaag tgtgctttga aacgtcatag cagccctggt
     2341 ttgaatagag atacggtcaa acggaagctc cagttctaat ggcaacacat ctaataatag
     2401 ttctaatgct acacagcttc aacctgagga ggagcatggt caacttctgt tgaatgttta
     2461 acatcgagct ctcctgaaca ctgtattgtt caacactccc cagagcagca gaacccatgg
     2521 aatgaggatg tattaaaagg gtttattgga tcggcttaca tgatgtagtt tggatggtcc
     2581 aacaacacgt gccttcagaa tgaagaaccg ggtacctgct caacccagga ggctggatga
     2641 tcccacagtt ccaacctgct gccaaaggtg tgaaggattc ttggtcctcc ctccacatta
     2701 gcagccagaa gaagatgggt ttttctatca ggaaaggatg cagcagcagc agcagcagca
     2761 gcagcagcag cagcagcagc agcagcagc
//
