LOCUS       XM_039079048            7332 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat and sterile alpha motif
            domain containing 1B (Anks1b), transcript variant X8, mRNA.
ACCESSION   XM_039079048
VERSION     XM_039079048.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079048.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7332
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7332
                     /gene="Anks1b"
                     /gene_synonym="AIDA-1; EB-1; RGD1565556"
                     /note="ankyrin repeat and sterile alpha motif domain
                     containing 1B; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 20 ESTs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 32 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:314721"
                     /db_xref="RGD:1565556"
     CDS             320..3910
                     /gene="Anks1b"
                     /gene_synonym="AIDA-1; EB-1; RGD1565556"
                     /codon_start=1
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X8"
                     /protein_id="XP_038934976.1"
                     /db_xref="GeneID:314721"
                     /db_xref="RGD:1565556"
                     /translation="MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLL
                     SIWRGPNVNCTDSSGYTALHHAALNGHKDIVLKLLQFEASTNVADNKGYFPIHLAAWK
                     GDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSK
                     LETPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHTPLHLAARNGHKAVVQVLLEAGM
                     DVSCQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPSQKSLQ
                     IATLLQDYLEGVGRSVVLEEEHAQEDTAQETRLSSPAQSPSQKTKSETVTGELSKLLD
                     EIKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVED
                     EEEDPNSCGPTGLWEALTPCNGCRNLGFPMLAQESYPKKRNYPMEIVPSASLDTFPSE
                     NENFLCELVDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTGHHRNSSTGPTPDCS
                     PPSPDTALKNIVKVIRPQPKQRTSIVSSLDFQRMNHNQEYFEISTSTGCTSFTSSPPV
                     SPPTSSVETTEIKNEGAEHTDDLSQQEDDEHPKEYDAGQFAGLLHGSSPACEAPENPF
                     HLYGKRNQGEDGQEEASLANSPLPFKQTPIENNPEPSVKKIKPKVVSRTIFHKRSHQL
                     ENHTIVGTRMSRGGSRNGDQWGVNPGGFVERACTLGRIRSLPKALIDMHLSKNVSKSD
                     SDLIAYPSKDKARVNWSKSSTAERSSKDNSERTPSFTSEWEEIDKIMNSIDVGINSEL
                     EGMNGPRCPVQTVGQWLESIGLPQYENHLTANGFDNVQFMGSNVMEDQDLLEIGILNS
                     GHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKK
                     IWELELINVLKISLIGHRKRILASLGDRLHEDPPQKPPRSITLRTGDWGEPSITLRPP
                     NEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQK
                     STEQMKKVPTIILSVSYKGVKFIDAANKNIIAEHEIRNISCAAQDPEDLSTFAYITKD
                     LKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPS
                     KPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF"
ORIGIN      
        1 tccttccgtt cctcggcagc acccgggccc agtccccacc cgctcgcacc ccacccgcgg
       61 gaaggaggcc tcgggaatgc aggggagtgg ctgtgggggc gcgtcgccgc tcggccagcc
      121 cctctaccca aacacgggct gctccccatt gtaaagctgc tccgggagaa ggaggacggc
      181 gtgctgctcc ctgtgcgggg ctgcggggaa tctcagcgtc cttttagggt ggggcgggga
      241 gggccctggc ttttggggag tggacctgga ggaggaccgg agcagggaaa ggactctgta
      301 gcggactcgg tgagagacta tggggaagga ccaggagctg ctagaggctg ctcgtactgg
      361 caatgtggct ctggtcgaga aactcctatc tggcaggaaa ggagggatcc tgggtggtgg
      421 atccggacct ctgcccctgt ctaatctgct aagcatctgg cgaggtccca acgtgaactg
      481 cacagacagt tcgggttaca ccgctttgca ccacgcagcc ttaaatggac ataaggacat
      541 agttctcaaa ctacttcaat tcgaggcgtc caccaatgtc gcagacaaca aaggttactt
      601 ccccattcac ctggctgcct ggaaaggaga cgtggagatt gtgaagattc ttatccatca
      661 cgggccttca cattccagag tcaatgaaca gaacaacgag aacgaaactg ccctccactg
      721 tgcagcgcaa tacggacact cagaagtagt ggctgttctc ctagaggagc tcaccgatcc
      781 caccattagg aacagcaagc tcgaaacacc gctggacttg gcagcgctct acggaaggct
      841 gagggtggtg aagatgatca tcagcgcgca cccaaactta atgagctgta acacgcggaa
      901 gcacacgccg ctccacctcg cggcccgcaa tggtcacaag gccgtggtgc aggtgctgct
      961 ggaggcgggg atggacgtga gctgtcaaac agagaagggg agtgctcttc acgaagcggc
     1021 gttgtttggg aaggtggatg tggtgcgagt tctgttagaa acaggaattg atgccaacat
     1081 aaaggacagc ctaggtagaa ccgtcttaga cattctgaaa gagcacccgt ctcagaagtc
     1141 tctccagatt gcaacgctcc tgcaagacta tttggaaggc gtgggaaggt cggtggtcct
     1201 cgaggaagag catgctcagg aagacacagc acaagagaca cgcctttcgt ctcctgccca
     1261 gtctccttct caaaagacta aaagtgaaac tgtcactgga gaactatcga aactcctgga
     1321 tgaaataaaa ctctgtcaag aaaaggatta ttcctttgaa gatctgtgcc atacaatctc
     1381 agaccactac ttagataatt tgagcaagat ctcagaggaa gaacttggga aaaatggaag
     1441 ccagagtgta agaacttcat ctacaataaa tttgtcacca ggagaagtgg aagacgaaga
     1501 ggaggatcca aactcttgtg gacccacggg actttgggaa gcgctaactc cttgtaacgg
     1561 atgtaggaac cttggctttc ccatgctcgc acaggagtct tatccaaaga agaggaatta
     1621 ccccatggaa attgtaccat ctgcttctct ggacacattc ccttcagaaa atgagaactt
     1681 tctttgtgaa ctcgtggaca cagctgttac aaagaagccc tgttccttag aaatcgcaag
     1741 ggcaccttct ccgagaactg ataatgcctc tgaggtagca attactgctc caggaactgg
     1801 tcaccataga aacagctcta caggcccaac acctgactgc tcacctccat cccccgacac
     1861 tgccctaaaa aatatcgtaa aagttatccg acctcagcca aaacaacgaa catctattgt
     1921 gtcgtctctg gatttccagc gaatgaatca taaccaagaa tactttgaaa tcagcacatc
     1981 tacaggctgt accagcttta cttcgagccc tccagtgagc ccacccacct cctctgtgga
     2041 aaccacagaa atcaagaacg agggagctga acacacagat gacctctctc agcaggaaga
     2101 tgacgaacac ccaaaagagt atgatgctgg gcaattcgca ggccttctcc acgggtcctc
     2161 tccagcctgt gaggctccag aaaatccgtt tcacctgtat gggaaaagaa atcaaggtga
     2221 agacggacaa gaggaagcca gcttggccaa cagtcctttg cctttcaaac agactccaat
     2281 agaaaataac ccagagcctt cagtgaagaa aattaaaccc aaagtggtca gtagaacgat
     2341 tttccacaaa agaagccacc aacttgagaa ccataccatc gttggcacaa gaatgtccag
     2401 gggtggatcc cgcaacggcg accaatgggg tgtgaatcca gggggcttcg tggagagagc
     2461 gtgcactcta gggagaataa ggtcattgcc taaagccctg atcgacatgc atttatccaa
     2521 aaatgtctcc aagtccgatt ccgatcttat tgcgtaccct tccaaggaca aagcgagagt
     2581 taactggagc aaatcgtcaa ctgcagagcg cagttccaaa gataattctg aaagaacgcc
     2641 ttccttcaca tctgaatggg aagaaatcga caaaataatg aactcgattg acgttggaat
     2701 caacagcgaa cttgaaggga tgaacggacc cagatgccct gtccaaacag taggacaatg
     2761 gttggaaagc attgggctac ctcagtacga gaaccacctg acggctaatg gatttgacaa
     2821 tgtacagttt atgggaagca atgttatgga agatcaggat ttgttggaaa ttggaatcct
     2881 taactctggt cacagacaaa gaattctaca ggcgatccag ctgcttccaa agatgaggcc
     2941 catcggccac gatggctacc atcccacctc tgtagctgag tggctggatt ccatcgagct
     3001 gggcgactac acgaaagcct ttctcatcaa tggctacacg tcgatggacc tgttgaaaaa
     3061 gatctgggag cttgaactta ttaacgtttt aaaaatcagt ttgattggcc acaggaagcg
     3121 cattttggca tctctgggag acagactgca cgaggaccct ccacagaagc cccctcggtc
     3181 catcaccctc aggacagggg actggggaga accttccatc accttgcgac ctcctaatga
     3241 agccacagcc tcaactccag tccagtactg gcagcatcac ccagaaaagc tcatcttcca
     3301 gtcgtgtgac tacaaagcct tttatttagg ttctatgctg ataaaagagc tgaggggaac
     3361 ggaatcaaca caggacgctt gcgcaaagat gcgggctaac tgtcagaagt ctacggagca
     3421 aatgaagaaa gtccccacta tcattctttc tgtctcatat aaaggagtca aatttattga
     3481 tgcggcaaat aagaacataa ttgccgagca tgaaattcgt aatatctctt gtgctgccca
     3541 ggacccagaa gacctctcaa cctttgctta tatcacaaaa gatctgaagt ccaaccacca
     3601 ctactgtcac gtgtttactg cctttgatgt gaatttagcc tatgaaatca tcctaacgct
     3661 ggggcaggca tttgaggtcg cttaccagct agctctacaa gcaagaaaag ggggccattc
     3721 ctccacgctt ccggagagct ttgagaacaa gccctcgaaa cccatcccaa agccccgagt
     3781 tagcattcgc aagtcagtgc agatcgaccc ttctgagcaa aagactctgg ccaatctgcc
     3841 gtggattgtg gagccggggc aagaagccaa gaggggcatt aataccaagt atgaaaccac
     3901 gattttctga tacccgccgc cccgtcctcg cggtgccttg ctcgccaagc agtccccgca
     3961 gcaggctttc cttcgcgcct ccgtgtccac ccaccccggg aggaagaccg ctccagctcg
     4021 cgtggcctcg tcacgggcgg aagggcgacg gccatcccta gggagccttc tgccagcgag
     4081 actttgacgc cccttagagg cgcgaggggg gctgcgcggg gcgccccaac tccgctacca
     4141 ccgcctcctt cgaggtactg ctcaactgcc ccgtatttgc tttgctttag ttggggggag
     4201 aatacctttt taaaagtgaa gggtggggag agggagggtc tccagtactg cctaaaagtc
     4261 taaacatctt gggttaagtt ttcactgtca gccatttcga agggaaagtc agaacagtac
     4321 tacacacccc tccaaccccc ccaaaagcat ctgtaaaatc attgtattac tgagtacaat
     4381 ttcatgcaaa aagacaaagc aaccctcacc aggaaattct gcccccaccc cacccgattt
     4441 ctatatttgt ggattttata tgtaatcaac tatgtcagat aaaggaaacc tttattgaat
     4501 gattcaaaaa tttaaaaagt gatttaaaac agaggaattt attatgcaca gaaaaaatgt
     4561 gtcttgtatt aaatattttt attaaaagaa tgtttcatta atgcattcat atgaaaacta
     4621 ggttttgttg tgcgggatgt ttctggtttc gtttcaaatg actacattcc tacagctact
     4681 tgccctgagg acctggctta gttgtggtga aaccctgttg tccttgcctc cagagcggaa
     4741 gaaaaggcta ggctcagggg tgacccgaag tgctgactca cccatagcct gcataagtgg
     4801 tttttttggg ggggttgctt tgggtttttt tcgttttgtt ttgttttgtt ttagcctttg
     4861 aggtgtttta atgaacatgt ttaacgaaaa taaaagctag ggctcctgct gtcaagattt
     4921 ctgtcaagga aaccttgttt gagaacggtg ttaataaaat tctattgcaa aattcttttc
     4981 tagaaaaaaa aataaataac acaaaaaaga agaaattcca aagtaataaa aacttttctt
     5041 gaaacagatt taaaaaaaga tgtttgctta ctatttgatt aaataaattt acttacgttt
     5101 ctttaaggta ttttaatttt tttaatgtct ctgtggagta tttgtatgat accataatgt
     5161 atatttctgt agaaacaaat tatataaaca gtatcaatat cattatagaa aaataacatt
     5221 ttaatgtata ttgttctaac caatcatatt gtgaatcatt ttgaagttca ttatagcgat
     5281 attgataaat tgtgaacttg tcttaatgtt ttttttttat taaccaatat cattttaaac
     5341 ctgagattat cacattcatc aggtggtgag ttttaaagac aaactaaatt tcatttcaac
     5401 tgacaaatgt atatggtttt agttcagtat tgaagaattt taatacaata ttaaattact
     5461 tgaactgaat agttccttgt atatattttg cctattccct gttgatatgt atgtagtaaa
     5521 cagagaagag aataacgtta aaatatggtt accaaaagga acttgtatag gaggagcaaa
     5581 gcagccaaca gctttgctgg gacacaagca tatgtgtaaa caagcttggg cttccagata
     5641 taaattttgt aatttttgtc attatttata tcctatatta aaaaaaagca cacaaaataa
     5701 aacagaagtt gtacagtggc tggtgcctgg catcgtgttg tgagcacctc ctctcttcca
     5761 ctgaggagca ggaccaaagg cccagccctc ttcacagata gagacttgtt tttcaattgg
     5821 cgacatcagt gaggggggaa aagaaaaggc ttgctcattt ccaagttcac gcagtctgaa
     5881 aaaggaatac tgtcttccga agcttgaatc tcagccataa gccaccaggt ctttgcattg
     5941 tctctttaaa agtggtgtat aagggggaaa ttggcaagac agacatttct aaacagaggg
     6001 gaacacagac agacagacag acagacagac acacaaacac acacacacac acacacacac
     6061 acacacacac accccagact gcgtatgtgg cataacatac agcttgcatg ggaagcagcc
     6121 ccctgcacat tgcttataca tcctcgagtc ctttcatctt ttttcctaaa acgtgtgcac
     6181 ccgctataaa gtgggtgatg ggctcgtcag agctgggctg attctgtggc cggtgaccac
     6241 catgcctcag gtccctcaac ctccatcacc catggcccaa tccataactg ccacccttga
     6301 aaacccaaag cagtctgagg gtgctctctg cctgtcactc agaggcctgg gacgttgaac
     6361 ccaaaaaagc taaacttatg aaagccgggc tgaaatgggg cccggggcct gggatagctc
     6421 aggcaggggt tttccactct gatgtttcca ctgggccagt ttgtttcttt gtctctattt
     6481 tctctgttca tcccgctgag tgtttgtatc catgatgatt ccagcatgaa gtacgtagca
     6541 cactccagtt aggagaaatt ttttaaagat acaagactag cgtggtggtg agatgagata
     6601 gtcttctcgt gctcgcagca acctgaaggg gcaataagga caaagaaggc catgtggcag
     6661 ggttagcccc ctccagacca ggggtacaac ggacagttgt ggtgagcctc ggaaaggcag
     6721 gggtaacctt ccctctccgt tcttcaccca tggccagagc aaggcaggta gtgaaaggga
     6781 tatgcctgat gcagaaaagc cagctcaggc atggcaggtg ggatttatag ctggttttgt
     6841 ttaaagcgaa ggcctgatat ttgataaatg cagtaaccag cggttgagag tgacaagccc
     6901 ttaaatgcga acattaatca aaggagaact taaacggccc cctttacaga aggacttgaa
     6961 ttcaatcgat ccatttaatt tttttcttat taaaccgtgc tctgtaataa atctgagtga
     7021 atggacccta tgaaaactct gctgggctta ttaataagtc atggaagtgg tttttctcaa
     7081 gtcggactgc ttgggaatgt tgccagccta tctgatgttt ggatgagacg gaatagacgt
     7141 ttaagcataa agggcatatg accacagtct cgaaaatcag tcaacatttg cacttggact
     7201 ccaagtaaat gttactccta cttctaaaat gaattgaaga tttggggagt agtctagttt
     7261 ccggtgagct agaatgtaac gcctacgttc agaaatctgt actggaataa aagcctcttt
     7321 gctgacattg ca
//
