LOCUS       NM_001270039            2977 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ankyrin repeat domain 55 (Ankrd55), mRNA.
ACCESSION   NM_001270039 XM_001066855 XM_342195
VERSION     NM_001270039.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   denDekker,A.D., Xu,X., Vaughn,M.D., Puckett,A.H., Gardner,L.L.,
            Lambring,C.J., Deschenes,L. and Samuelson,D.J.
  TITLE     Rat Mcs1b is concordant to the genome-wide association-identified
            breast cancer risk locus at human 5q11.2 and MIER3 is a candidate
            cancer susceptibility gene
  JOURNAL   Cancer Res 72 (22), 6002-6012 (2012)
   PUBMED   22993404
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JQ013731.1.
            
            On or before Jun 27, 2012 this sequence version replaced
            XM_342195.5, XM_001066855.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JQ013731.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q14"
     gene            1..2977
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /note="ankyrin repeat domain 55"
                     /db_xref="GeneID:361898"
                     /db_xref="RGD:1307735"
     exon            1..1000
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     CDS             907..2664
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 55"
                     /protein_id="NP_001256968.1"
                     /db_xref="GeneID:361898"
                     /db_xref="RGD:1307735"
                     /translation="MVYQAASNGDVNSLTAVIREDPSILECCDSEGCTPLMHAVSGRQ
                     VDTVKLLLKMGANINTQDAYGRTSLCLATYLGWLEGCVSLLRNGAKHNIPDKNGRLPL
                     HAATAEPDVRLLIVLLQQSSLSEINHQDTEGMTPLHWAAFHNRPQHTQMLLKKGADPT
                     LVDKDFKTALHWAVQSGNRILCSIILSHRQGPSIINYDDESGKTCVHIAAASGFGDII
                     HDLAKVPECNLQALDVDDRTPLHWAAAAGKAECVQSLLDLGMDSNLRDINESTPLAYA
                     LYCGHTACVRLLSREGRAEPARSLPSQNSQPQKKEGRFSVLNQIFCKNKKEEQKAHQK
                     EQSRARPKEEDTSEVNDIIATFDSVVDTNCQDQPGDQVDMVVFKKRTSENSKYLLPEK
                     KSLARKGLPPIRTQSLPPITLGSNFLTASHGATSHAGLNSGLQHTAQRSQKSRSEQDL
                     LNNRTGCQVSLDNPWKGDTRQAFSCKAWTVSSSDKLLDRMFTGQPGHQELSGPPHLPH
                     LPNPSPGQGLQHLSPNRPKVRDFPFTRNSLAPLPDQKFLSGEPLRTNRVLPAIPSQRG
                     HDPPAEESEWSSSPTHDEN"
     exon            1001..1131
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1241
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1302
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1431
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1616
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1617..1784
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            1785..2449
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            2450..2542
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
     exon            2543..2977
                     /gene="Ankrd55"
                     /gene_synonym="RGD1307735"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttacagtt ggacagcagt ggtgggcagg ttgtgagggg gccacgtgag agctagttct
       61 gcatagggaa agctcctggt aggaaggagg cagctactgc tagatgctca gcaagggagg
      121 agagccccat cttctccctt cccagtctcc agggcctccc atgtgaagca acaggataag
      181 ggcatctgga gatagatagt gagctaagat caaggtacga acatctttgg aagagagaga
      241 ggaatgacca taatgcttct cccaaagatg gacaaagtga ggtactaaga agaccggtaa
      301 tatgtccatg gatgtagttc agttggtaga gggcttacct agagagcaca tgttttcaat
      361 ttccaacaat tgcacaaaac caggcatagc agcccacgtc tgcaaatgcc aactctcagg
      421 ggtgggtgta agagaatcag aaatccaagg tcagcctcag ctacatagaa aattaaggcc
      481 aacctgggct acacaggacc gtggctctaa acagaaacaa acaaaagaga aaacatagta
      541 tgcttcagat cttgaagaat agattgaaat gaagaagatg gccctcttcc cttactggtc
      601 tctctgattt tgggaaacct caatgcctaa agagtcataa cacgtcaatc ccaaggctcc
      661 ttgccaacat gtggtagtgt gcgaatgacc tagagtggcc cacttttctt cagaagtgtc
      721 ccttcagaag agagtatatg actaagctga ccccgcctct gcctggattc actggagagg
      781 aaggtttagt gactcacttg tgtgggtgac aatctggtct gtggtatcct ttgagtgaac
      841 tcactttgca cactaacaga gtatctggtt tgtgtaggtg actcatctga agaagtcgac
      901 ctgacaatgg tgtatcaggc agcatcgaat ggagatgtca actctctgac tgccgtgatc
      961 cgggaggatc cgtccatcct agaatgttgt gacagtgaag gatgtacgcc cttgatgcat
     1021 gcagtttcgg gacgtcaagt ggacacagtg aagctgctgc taaagatggg cgccaacatt
     1081 aatacacagg atgcatacgg tcgcaccagt ttatgcctgg caacctacct gggctggctt
     1141 gaaggctgtg tgagtctgct cagaaatggt gccaagcaca acatcccaga taaaaatggc
     1201 cgcctgccac tgcacgctgc cactgctgaa cctgatgtga ggcttctcat cgtcctgctg
     1261 cagcagtcta gcctcagtga gatcaaccat caggacacag agggaatgac accacttcat
     1321 tgggcagctt ttcacaaccg gcctcaacat acccagatgc tgttgaagaa gggggcagac
     1381 cccacccttg tggacaagga ctttaaaaca gctctccact gggctgtcca gagcggaaat
     1441 cgaattctgt gctccatcat tctgagccat cgtcagggcc catccattat caactacgac
     1501 gacgagagtg ggaagacgtg tgtccatatc gcagctgctt ccggtttcgg cgacatcatt
     1561 cacgatctgg ccaaggtccc cgagtgtaac ctgcaggctc tggatgtgga tgacaggaca
     1621 cccctgcact gggctgcagc tgctggaaag gcagaatgcg tccagtcact gctggacttg
     1681 ggcatggaca gcaacctgag ggacattaat gagagcacgc ccctggccta cgccttgtac
     1741 tgtggtcaca cagcctgcgt caggctcctt tcccgagagg gccgagcaga gcctgctagg
     1801 tctctcccct ctcagaacag tcaaccccaa aagaaggaag gacgattcag cgtgctcaac
     1861 caaatcttct gcaaaaacaa gaaagaggag cagaaagccc atcagaagga gcagagcagg
     1921 gccagaccta aggaggagga cacctcggaa gtcaatgaca tcatcgccac ctttgacagc
     1981 gtcgtggata ccaactgcca agatcagcct ggtgaccagg tggacatggt tgtctttaag
     2041 aagaggacct cagagaattc aaagtatctc ttgccagaaa agaaatccct ggcccggaag
     2101 gggcttccac caatcagaac acagagtctc ccacccatca ccctgggcag taacttcctg
     2161 acagcctccc atggagccac gtcccacgct ggtctgaact ctggtcttca gcatactgcc
     2221 cagcgttctc agaaaagccg aagcgaacag gacctgttga ataataggac tggctgccag
     2281 gtgtcactag ataatccctg gaagggtgac actaggcagg cattctcctg caaggcttgg
     2341 actgtgtctt cctctgataa gttactagac aggatgttca ctggccagcc tggtcaccag
     2401 gagctgtctg ggccaccaca tcttcctcat ctacctaatc cctcaccagg gcaaggtcta
     2461 cagcatctct ccccaaacag acctaaagtc agagacttcc cctttactcg gaacagcctg
     2521 gcacctctgc cggaccaaaa atttctatct ggagaacccc tgagaacgaa ccgggtgctt
     2581 ccagcgattc caagccagag gggacatgac ccaccagctg aagagagcga gtggtcctcc
     2641 agtcccaccc atgatgaaaa ctgactgcag gttgctctgt ggaaatatag aagactttaa
     2701 tttttcaact ttccaagggt gagattactc tagtttatat gagcaaagtc ttaattttag
     2761 taagctgcgt tctacaagcc acttacggtt ttataattca aggttcctca tttcaaataa
     2821 atacacttcc taaatactca cttagaatct ccaggtgtgc aaacatcacc cagtctatga
     2881 gtttctgtgg acccccgccc tcaacacact gtaattcaga aacaaaatac acacctgaaa
     2941 ggaaggttta ggtacgtttc atttatgttt gtgccat
//
