LOCUS       NM_001191606            4831 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ankyrin repeat domain containing 50 (Ankrd50),
            mRNA.
ACCESSION   NM_001191606 XM_215553
VERSION     NM_001191606.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4831)
  AUTHORS   McGough,I.J., Steinberg,F., Gallon,M., Yatsu,A., Ohbayashi,N.,
            Heesom,K.J., Fukuda,M. and Cullen,P.J.
  TITLE     Identification of molecular heterogeneity in
            SNX27-retromer-mediated endosome-to-plasma-membrane recycling
  JOURNAL   J Cell Sci 127 (Pt 22), 4940-4953 (2014)
   PUBMED   25278552
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_215553.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1151764.1,
                                           SRR26360172.1151947.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840108,
                                           SAMN12840115 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-512               JAXUCZ010000002.1  123426630-123427141 c
            513-742             JAXUCZ010000002.1  123407753-123407982 c
            743-4287            JAXUCZ010000002.1  123398722-123402266 c
            4288-4831           JAXUCZ010000002.1  123396606-123397149 c
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q25"
     gene            1..4831
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /note="ankyrin repeat domain containing 50"
                     /db_xref="GeneID:294988"
                     /db_xref="RGD:1311665"
     CDS             1..4284
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /note="ankrin repeat domain 50; ankyrin repeat domain 50"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 50"
                     /protein_id="NP_001178535.1"
                     /db_xref="GeneID:294988"
                     /db_xref="RGD:1311665"
                     /translation="MTNPWEEKVCKMAQTSLLQGKQFYCREWVFHKLQHCLQEKSSRC
                     FSAANAQSLVGDAGNNASALSGKGASWGVLLVGGPGSGKTALCTELLWPSSPASLQRG
                     LHRQALAFHFCKAQDSDTLCVGGFIRGLVAQICQSGLLQGYEDKLRDPAVQSLLEPGE
                     CERNPAEAFKRCVLLPLLGMKPPPQSLYLLVDSVDEGCNVVEGEQTSPNLSGTVAELL
                     AGHHEFFPPWLLLLCSARKQSRAVTKMFTGFRKISLDDLRKAYIVKDVQQYILHRLDQ
                     EEALRQHLTKETAETLNQLHIKSSGCFLYLERVLDGVVENFIMLREIRDIPGTLNGLY
                     LWLCQRLFVRKQFAKVQPILNVILAACRPLTMTELYHAVWTKNMSLTLEDFQRKLDVL
                     SKLLVDGLGSTKILFHHSFAEWLLDVKHCTQKYLCNAAEGHRMLAMSYTCQARNLTPL
                     EAQEFALHLINSNLQLEPAELALWMIWNGTPVKDSLSTLIPKEQEVLQLLIRAGAHVN
                     SEDDRTSCIVRQALEREDSIRTLLDSGASVNQCDSNGRTLLANAAYSGSLDVVNLLVS
                     RGADLEIEDTHGHTPLTLAARQGHTKVVNCLIGCGANINHTDQDGWTALRSAAWGGHT
                     EVVSALLYAGVKVDCADADSRTALRAAAWGGHEDIVLNLLQHGAEVNKADNEGRTALI
                     AAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDRGAE
                     VDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVVN
                     TLLFWGAAVDSIDSEGRTVLSIASAQGNVEVVRTLLDRGLDESHRDDAGWTPLHMAAF
                     EGHRLICEALIEQGARTNEIDNDGRIPFILASQEGHYDCVQILLENKSNIDQRGYDGR
                     NALRVAALEGHRDIVELLFSHGADVNYKDADGRPTLYILALENQLTMAEYFLENGANV
                     EASDAEGRTALHVSCWQGHVEMVRVLIACHADVNAADNEKRSALQSAAWQGHVKVVQL
                     LIEHGAVVDHTCNQGATALCIAAQEGHVDVVQVLLEHGADPNHADQFGRTAMRVAAKN
                     GHSQIIKLLEKYGASSLNGCSPSPVHTMEQKPPQSTPSKMQSLTIRSNSSGGTGGGDL
                     QPSLRGLPNGPAHAFSSPSESPDSTVDRQKSSLSNNSLKSSKNSSLRTTSSTATAQTV
                     PIDSFHSLSFTEQIQQHSLPRSRSRQSVVSPSSTTQSLGHSHNSPSSEFEWSQVKPSL
                     KSTKSNKGGKSENSSKSGSAGKKAKQNNSSQPKVLEYEMTQFDKRGPVAKSGSSPPKQ
                     MPAESQCKIMVPSSQDSNRAQPQFLIHQQGGEQKRRNGIMTNPNYHLQSNQVFLGRVS
                     VPRTLQERGHQEVLEGFPPSETELNLKQALKLQIEGSDPSFNYKKETPL"
     exon            1..512
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /inference="alignment:Splign:2.1.0"
     exon            513..742
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /inference="alignment:Splign:2.1.0"
     exon            743..4287
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /inference="alignment:Splign:2.1.0"
     exon            4288..4831
                     /gene="Ankrd50"
                     /gene_synonym="RGD1311665"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgactaatc cttgggaaga gaaagtctgc aaaatggccc agacgagtct cctgcaaggg
       61 aagcagttct actgtcggga atgggttttc cacaaacttc agcactgcct ccaggagaaa
      121 tcaagccgct gtttcagtgc agccaatgca cagtccctgg tcggggatgc tgggaataat
      181 gctagtgccc tctctggaaa gggagcctcc tggggcgtgt tgctggtcgg agggcctggc
      241 agtgggaaga cagccctgtg cactgagctc ctgtggccca gttcccccgc cagcctgcag
      301 agaggtctgc atcggcaggc tttggctttc cacttctgca aagcccagga ctcggacaca
      361 ctgtgtgtcg gggggtttat cagaggtctg gtagcccaga tctgccaaag cggactcctc
      421 caaggttatg aggacaagct aagagatcca gccgtccaaa gtctcctaga gcccggagag
      481 tgtgagagga acccagcgga agcatttaaa aggtgtgtgc tgctcccact cttggggatg
      541 aagccacccc cgcaaagcct ctacctgttg gttgactccg tggatgaagg ctgcaatgtg
      601 gtggaagggg agcagacgtc acccaacctc tccgggactg tggcagagct cttggctggt
      661 caccacgagt tctttccccc atggctcctg cttctctgct ctgcccggaa gcagagcaga
      721 gctgtcacta aaatgtttac tgggttccgg aagatcagtt tggatgacct ccggaaggcg
      781 tatatcgtca aggatgtaca gcagtacatc ctccaccgcc tggatcaaga ggaggcactc
      841 cggcagcatc tcaccaagga gacggctgag actctgaacc agctgcacat caagagcagc
      901 gggtgcttct tgtacctgga gcgagtgcta gatggagttg tagagaattt catcatgctt
      961 cgagagatcc gtgacatccc cggaactctg aatggtctct acctctggct ctgccagaga
     1021 ctttttgtcc gaaaacagtt tgccaaagtt cagcccattc tgaatgtgat cctcgctgcc
     1081 tgccggcccc tgaccatgac agaattatac catgctgtgt ggaccaaaaa tatgtctcta
     1141 accttggaag actttcagcg caagctagac gtcctctcca agctcttggt ggatgggttg
     1201 ggcagcacca aaatcctgtt tcaccacagc tttgctgagt ggctcttgga tgtgaagcac
     1261 tgcacccaga aatacctgtg taacgctgca gaaggacaca ggatgctggc catgagctac
     1321 acctgccagg cccggaacct gaccccactg gaagcacaag aatttgcctt gcacttgatt
     1381 aattcaaact tgcagctgga gccagccgaa ctggctctgt ggatgatatg gaatggtacc
     1441 ccagtcaaag actcactgtc caccttgata cccaaggagc aagaggtcct gcagctgctg
     1501 atccgagctg gtgctcatgt caacagtgag gatgatcgca cctcctgtat tgtccggcaa
     1561 gccctcgaga gagaggactc aattcggact ttactggata gtggagcttc tgtcaatcag
     1621 tgtgattcca atgggagaac tctgctggcc aatgccgcat acagtggcag tctggatgtt
     1681 gtgaacttgc ttgtctccag gggagccgat ttagaaatcg aagacaccca tggacacacg
     1741 ccacttactc tagctgctag acaagggcac acaaaggtgg ttaactgtct aattgggtgt
     1801 ggagccaata ttaatcatac agatcaggac ggttggacag cactgaggtc tgctgcttgg
     1861 gggggccaca cagaagtggt gtctgctctg ctttacgctg gcgtaaaggt agactgtgca
     1921 gatgcggaca gccggactgc tctgcgtgca gcagcctggg gtggccacga ggacatcgtc
     1981 ctgaacctgc tacaacatgg tgcagaggtc aacaaagccg acaatgaagg gaggactgca
     2041 ctcatagctg cagcatatat gggccacaga gagatcgtag agcacctgct ggaccatggt
     2101 gcagaggtaa accatgagga cgtggatggc agaacagcgc tctctgtggc tgcgctctgt
     2161 gtgccggcaa gcaaagggca tgcgtcagtc gtgagcctct tgattgatcg aggggctgag
     2221 gtagatcact gtgataagga tggcatgacc cccctgctgg tcgctgccta cgaaggtcat
     2281 gtggatgttg tagacctgct tctagaagga ggagcagatg ttgatcacac cgataacaat
     2341 ggacggacac cccttctggc tgcagcttcc atggggcatg cttccgtggt caacacactt
     2401 ctgttctggg gcgcagccgt ggacagcatt gacagcgaag gcaggacagt tctcagcata
     2461 gcttcagcac aggggaatgt ggaggtggtg cgcactctcc tggacagagg cttggacgag
     2521 agccaccgag atgatgctgg ctggacacct ctacacatgg cagcttttga gggtcacagg
     2581 ttaatatgtg aagctctcat tgaacaaggt gctagaacaa atgagattga caatgatggg
     2641 cgcatcccct tcattttggc ctcccaagag ggccattatg attgtgtcca gattctgctg
     2701 gagaacaaat ccaacattga tcagagaggc tatgacggga gaaatgcatt acgagttgct
     2761 gccctggaag gacaccggga catcgtggaa ttactcttta gccatggggc tgatgtgaac
     2821 tacaaagatg ccgatgggcg gcccacactt tacatattgg ccttagaaaa ccagcttaca
     2881 atggccgagt actttctaga aaatggtgca aacgtggagg ccagtgatgc agagggaagg
     2941 acagcgctgc acgtctcctg ctggcagggt cacgtggaga tggtacgggt acttatcgcc
     3001 tgccatgccg atgtcaatgc agcagacaat gagaagcgct cagccttgca gtctgcggcc
     3061 tggcagggcc atgtcaaagt ggtccagctt ctgatagagc atggtgccgt ggtggaccac
     3121 acgtgcaacc aaggagccac agccctctgc atcgcagccc aggagggaca tgtagacgta
     3181 gtgcaggttt tgctggagca cggtgctgat cccaatcatg ccgaccaatt tggacgtact
     3241 gccatgaggg tggcagccaa aaacgggcat tctcagatca ttaagttgtt agaaaaatac
     3301 ggtgcttcca gtctgaatgg ctgctcccct tcccctgtcc acacaatgga gcagaagcct
     3361 ccacagtcga caccatccaa gatgcagtct cttaccatca ggtccaacag ctctggtggt
     3421 acaggcggag gggatctgca gccttccctc cggggcttgc ccaatgggcc ggctcatgcc
     3481 ttcagctctc catcagagtc tccagactca accgtggatc ggcaaaagtc gtctctgtcc
     3541 aacaattctc tgaaaagctc caaaaactca tctctgagaa caacgtcctc cacagccacg
     3601 gctcagacgg tgcccattga cagtttccat agcctgtcgt tcacggagca gatccaacag
     3661 cactcgctgc ctcgcagcag gagcaggcag tctgttgtgt ccccctcttc cacaacccag
     3721 tccttaggac acagccataa ttctcccagt agtgagttcg aatggagcca ggtgaaacca
     3781 agtctgaagt caacaaaatc aaataaagga ggcaagtcag aaaactccag caagtctggg
     3841 tcagctggga agaaagctaa acaaaacaat tcctcacagc caaaggttct agaatatgaa
     3901 atgactcagt ttgacaaaag aggacctgtt gccaagtctg ggagtagccc gcctaagcag
     3961 atgccagctg aatctcagtg taaaatcatg gtcccttcat ctcaggacag caaccgtgcc
     4021 cagccacagt ttctcatcca ccagcagggc ggcgagcaga agaggaggaa tgggataatg
     4081 accaacccca attaccatct gcagagcaac caggtgttcc tgggcagggt ctccgtccct
     4141 cgaacactgc aggagcgagg gcatcaggag gtgctggagg gcttcccccc ctccgagaca
     4201 gagctgaacc ttaaacaagc gctgaagctc cagattgagg gctctgaccc cagcttcaac
     4261 tacaagaagg aaacgccctt gtgagagttt ccagtttcca gttgtatgaa acagaaggca
     4321 ttgtggttgg aacagccgtt cagctgccag atggaagcca gacgcctgag gacgtgctgc
     4381 cgagactgtg actcccgcag tactgtgtcc tgacttactg tcatgtgcct acccagtaag
     4441 gctgccattc tcagcataac ccccatgctg aagcagtctc caccacaccg aataaatgca
     4501 gatgtaaact gcagctcctc aataccaaac cgggtgttga gtattttccc atttggtaaa
     4561 cgtgcatgtg ccatggtcgg gtgtctctgc aaaagcactg ttccgtattt attgttttct
     4621 gcgttgtgct gtgtactcgg tcccatcgca ttgtctggtg tgcctggttc ttgtgtattt
     4681 aatagatgtt actcaataaa gcaattcttg caactgtttt ctgtccgcta accttcagca
     4741 ctggataaaa acgagtgtca gtgttgatgc cacatggagg tgaaaatgac tttgtgatga
     4801 attttccaca gggatcaatt ctggtggtgt a
//
