LOCUS       XM_039081350            2451 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat domain 49 (Ankrd49),
            transcript variant X2, mRNA.
ACCESSION   XM_039081350
VERSION     XM_039081350.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081350.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2451
                     /gene="Ankrd49"
                     /gene_synonym="RGD1311759"
                     /note="ankyrin repeat domain 49; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 30 ESTs, 4 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315434"
                     /db_xref="RGD:1311759"
     CDS             430..1149
                     /gene="Ankrd49"
                     /gene_synonym="RGD1311759"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 49
                     isoform X1"
                     /protein_id="XP_038937278.1"
                     /db_xref="GeneID:315434"
                     /db_xref="RGD:1311759"
                     /translation="MEEEKVKDDENPDLESSVDFSEQFNQLELLETHGHLIPTGTQSL
                     WAGNSDDDDEQEEKNEEWYQLQEKKLEKEPSKLLLWAAEKNRLATVQRLLSEKAAEVN
                     TRDEDEYTPLHRAAYSGHLDVVRELVAQGADVHAVTIDGWTPLHSACKWNNTRVASFL
                     LQHDADINAQTKGLLTPLHLAAGNRDSRDTLELLLMNRYIKPELKNNSRETASDIARR
                     TSIYHYLFEIAEGCTNTSPPP"
ORIGIN      
        1 ggaaggtctc gccttaacag gacaaagacc tttcttccct gcgtcccttg acaatcgccc
       61 cagaatcctc agctcaccat atctggcttg ctctgtgtgc tcagagaacc ttgaagagag
      121 tgcagtaaaa ataatttgga accttaaatt agatcagacc tcaggacccc agaaggtctt
      181 gatgtaccgt aatttgtctt aatctgttgg aaccctagcg caggcctctg agatggggcg
      241 tgggcttcca cctcactgag ataacaaccg aaacagtttg tacctctctc aaaatggagt
      301 gttcctataa gttaggaaca catcctattc ctccatagcg gttggaaaga aacaatgtag
      361 acataattca tctctttaaa gattgcgccc tagtacttga aatgcttttt agctaggaga
      421 atagtaaaaa tggaagaaga aaaagtaaag gacgatgaaa acccagacct ggaaagctct
      481 gtggactttt ctgaacagtt taaccagctt gaattgttgg aaacccacgg acacctgatt
      541 cccactggta cgcagagtct ctgggcaggc aattctgatg atgatgatga gcaagaggaa
      601 aaaaacgaag agtggtatca attgcaagaa aaaaagctgg agaaagagcc aagcaaattg
      661 cttctttggg ctgctgaaaa gaatcggctt gctacagtgc agagactcct ctctgagaag
      721 gccgctgagg tgaacaccag agacgaagat gaatataccc ctcttcaccg cgcagcctac
      781 agcggacatt tagatgttgt tcgggagctg gtggctcagg gggcagatgt tcatgcagtg
      841 accatagatg gctggacacc gctgcacagt gcttgtaagt ggaataacac cagggtggcc
      901 tctttcttac ttcagcatga tgcagacatc aacgcccaga caaaaggcct tttgacccct
      961 ttgcaccttg ctgctgggaa cagagacagc agagacaccc tggaactcct cctgatgaat
     1021 cgttacatca aaccagagct gaagaacaac tcacgagaaa ctgcttctga tatcgccagg
     1081 aggacaagca tctatcacta cctctttgaa atcgcggaag gctgtacaaa cacttcacct
     1141 ccgccttaat aactctagta gttttcttaa gtttcaaagt accagtgcct cccatgtgtg
     1201 agatgtaaaa tattcccatg tacagagaac agatgtctca ctacagaagt tgttgtatgt
     1261 atcatggttt tcttccaggt gagctgcctg acctgatgtc aaatgtctct gagagttgtt
     1321 tgggtgcagc tgtggtgatt tctgcagttt gtgattttat cagaagtaat tttactggac
     1381 acgggtaata cagaaactaa ggatattttt tggtgctgat ccaagagaaa agtattttta
     1441 aatatcccat accctgggtc ttgttcagtt tagcctattg acttgtattt ttataaacta
     1501 actccaaatt ttcatcttca acatactggt gcagttcaac tgtcttctct gcatctccat
     1561 tgctttcctt ctgaacaaga aacactaaaa agtcagtgac ttaacatctg tgtaagtttt
     1621 aaaaaaaaat aatggaatgt ttagatgttt tttaagatgt aggccgttct aagaaaagca
     1681 gttagggaga tgcttaattc ttgaatgttt tacactgcct cccccaccac actcataatc
     1741 ctgtggacag tcctacctca ccctggtcaa cccatgtgac ccttactgtt atgaccagac
     1801 agtgtctcca tttagacatg cacaaaactg taccttggtc caaaagatta aaactgccct
     1861 ccaaagtgtt caccttcctt cctgcaggat tgggcattgc tcatgaattc caggaaatgt
     1921 ccagcactac cccacagccc tcattttcta caagccatga caaaggaaaa aggacaggaa
     1981 ttctaacagt gaggagtgat tgtcatatgg gaccagaata tcaagtggct caggctttct
     2041 taaaacaaaa acaaaagcaa gcaaacaaac aaacaaactc atagtgtgac tagtaacagt
     2101 gtaaatacaa atagaataca agtttgacaa tgcagaaggc aacctgcata tgacttcacc
     2161 agatctatgg catgtttgtt taaattacac taacttttaa tcttcttggt gcctgcaacg
     2221 tagctttcga tggactccct agcccctctg tattcccaag aggtcttctg agcatgagaa
     2281 tttgagtcct agggaaaggg cactgagggc tcattgtcaa ctcagaacac acctctagca
     2341 tgtctaggag ggagtttctg gaaaagtaac tgaagaagat gcacatcctg atgtgggtgg
     2401 tacatcacct gagctcaagt cccagattaa ataaagagag caagccaaga a
//
