LOCUS       NM_001135013            2774 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ankyrin repeat domain 42 (Ankrd42), mRNA.
ACCESSION   NM_001135013 XM_001062764 XM_215000
VERSION     NM_001135013.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2774)
  AUTHORS   Yamauchi,S., Ito,H. and Miyajima,A.
  TITLE     IkappaBeta, a nuclear IkappaB protein, positively regulates the
            NF-kappaB-mediated expression of proinflammatory cytokines
  JOURNAL   Proc Natl Acad Sci U S A 107 (26), 11924-11929 (2010)
   PUBMED   20547855
REFERENCE   2  (bases 1 to 2774)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Sep 19, 2008 this sequence version replaced
            XM_215000.4, XM_001062764.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1283075.1,
                                           SRR26643297.2613.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-988               JAXUCZ010000001.1  156102530-156103517 c
            989-1152            JAXUCZ010000001.1  156100064-156100227 c
            1153-1260           JAXUCZ010000001.1  156094674-156094781 c
            1261-1380           JAXUCZ010000001.1  156090862-156090981 c
            1381-1516           JAXUCZ010000001.1  156086791-156086926 c
            1517-1717           JAXUCZ010000001.1  156081967-156082167 c
            1718-1843           JAXUCZ010000001.1  156080412-156080537 c
            1844-1949           JAXUCZ010000001.1  156078653-156078758 c
            1950-2122           JAXUCZ010000001.1  156072877-156073049 c
            2123-2249           JAXUCZ010000001.1  156067335-156067461 c
            2250-2394           JAXUCZ010000001.1  156063617-156063761 c
            2395-2774           JAXUCZ010000001.1  156060516-156060895 c
FEATURES             Location/Qualifiers
     source          1..2774
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2774
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /note="ankyrin repeat domain 42"
                     /db_xref="GeneID:293117"
                     /db_xref="RGD:1310789"
     exon            1..988
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     CDS             916..2481
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 42"
                     /protein_id="NP_001128485.1"
                     /db_xref="GeneID:293117"
                     /db_xref="RGD:1310789"
                     /translation="MKDHTTPGVSNPGPSKSCRETADSSSRNKVPFGSIHDAVRAGDV
                     KQLSDIVERGANVNEVDALHQFTPLHWAAHSGSLECLHWLLWNGADATQTTTRGWTAA
                     HVAAIRGQDACLQALIINGANLATQDDRGCTPVHLAATHGHSFSLQVMLRSGVDPSVT
                     DKREWRPVHYAAFHGRLGCLQLLVKWGCGIEDVDYNGNLPVHLAAMEGHLHCFKFLLS
                     RVNSAVQALKAFNDNGENVLDLAHRFLKQNIVQFIQGAEYEGSHLDDQDDLAFPGHVA
                     AFKGDLEMLKKLIDDGVINLNERDENGSTPMHKAAGQGHIDCLQWLVEMGADSNITNK
                     AGERPSDVAKRFAHLAAVKLLEGLQKYEIDDIEGDKNHISFFIRHGVEGSTDAKDDLS
                     LSESDKANARMRAHKKIVELRQLLEIAESNFKHLGGITEEDLKQKKELLESKKTITEL
                     QEQLAYERLRREKLECQLDEYRVEVNQLKEALEKIQVPSAEAMEDDSCEYSKEKRRMK
                     KKNSPGGMFVRRF"
     exon            989..1152
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1260
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1380
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1381..1516
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1717
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..1843
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1844..1949
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            1950..2122
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            2123..2249
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            2250..2394
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
     exon            2395..2774
                     /gene="Ankrd42"
                     /gene_synonym="RGD1310789"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccgccacg ccctccagcc tgcaggaact gagactctgg aaaacaactc tgagcagagc
       61 gttccggccg acggcggttg ccgtcacaac caccagcgtg ccccggagac cggagactgc
      121 ggcctccgcg ccagccgccg tgcgtgtgcg gtccgcggtc cgcacggcta cctcggctcc
      181 gggtctaggg agaaggtcct ggaaaagcag ggattctgtt gccacaaccc cagagaaaga
      241 aacctagaag gagggaaccg ccacaccaag atctcttcag taagagtaag tgaggacggc
      301 ggcgtttccc gaagggactc gagaagaccc agtgaagacc taaggcagca ccgctgcgtc
      361 tctcaggaga gaattaggga acaggatggc tacctgcaga gcagcccatg ggtagctgtg
      421 aggggcgaca gtggccaacg cagtggcgac gcgagcctag gtgaagtcgc tggcttgcat
      481 ccctgcgact tgagggcaac cgtcaacaaa gacgcctggg tggacgtccc tgaaactcga
      541 gggctccgaa ccagtgactc cgggatccga gacagtgagg actgcagcgg ttcttgggaa
      601 ggagcaagtg tcgatgccag ccactgcctc agttcttggg aaggagtaag tgatgaaagg
      661 agttacgagg ccagagactc ttctagggtg aacatcagtg aagactccag ccaccggctc
      721 cgtggcttat gggagagaga aagcgaagag gattcccgct taaggggctc ttgggagaga
      781 agggaggatc gtggatcacg caccagcgac gaggagtcca gttcttacag cagtggtcca
      841 tgcgtgggag caagtgaaga ccagctcagc agcagggact tgggctccac tcctccccag
      901 agtccaagtc caaggatgaa ggaccacact acgcctggtg tgtctaatcc aggtccctcc
      961 aagtcctgta gggagactgc agactcaagt tccaggaaca aggtgccctt tggtagcata
     1021 catgacgcag tacgggctgg cgacgtcaag cagctttcag acatcgtgga acgtggagcc
     1081 aacgttaatg aagtggatgc gctccatcag tttactcctt tacattgggc tgcacattct
     1141 ggaagtttag agtgccttca ctggctactc tggaatggtg cggatgccac acagacaact
     1201 acaaggggat ggacagcagc tcacgtagct gccatccggg gtcaggatgc ctgcttgcag
     1261 gctcttataa tcaatggagc caacctagca actcaagatg accgtggatg cactccagta
     1321 caccttgctg ccactcacgg acactctttt tctttacaag taatgctgcg aagtggagtg
     1381 gatcccagcg tgactgacaa gagagaatgg agacctgtgc attatgcagc ttttcatggg
     1441 cggcttggct gcttgcaact tcttgtcaaa tggggatgtg gcatagaaga cgtggactac
     1501 aatggaaacc ttcccgttca cttagcagcc atggaaggcc acctccattg ttttaagttc
     1561 ctactgagta gagtgaacag tgcagtacaa gccttgaaag ccttcaatga taatggagaa
     1621 aatgtactgg acctggcaca tcggttctta aaacagaaca ttgtacagtt tattcagggg
     1681 gctgagtatg aaggaagcca tttagatgat caggatgatt tagcctttcc aggccatgtg
     1741 gctgccttta agggtgattt agaaatgctt aagaaactga tagacgatgg ggtaattaat
     1801 ctgaatgaac gtgatgaaaa tggatcaact cccatgcata aagctgctgg acagggccac
     1861 atcgattgtt tgcagtggtt agttgaaatg ggagctgaca gcaatattac caacaaagca
     1921 ggagagagac ccagcgatgt ggctaagaga tttgcccatt tggcagcagt gaaactctta
     1981 gaggggctac agaaatatga gatagatgac attgaaggtg ataaaaatca tataagtttt
     2041 ttcataaggc atggtgttga aggaagcacc gatgccaagg atgacttaag tctgagtgaa
     2101 tcagacaaag cgaacgccag aatgagagct cataagaaaa ttgtagaatt gagacaactt
     2161 ctggaaatcg ctgagagcaa ctttaaacac ttgggtggga taacagaaga ggatctaaag
     2221 cagaagaaag aactactgga gtctaagaag accatcacag agctgcagga gcagctggcc
     2281 tatgagcgac tccgcaggga gaagttagag tgtcaactgg atgagtaccg agtggaagtg
     2341 aatcaactca aggaagcgct ggagaaaatc caggtcccca gtgctgaggc tatggaagat
     2401 gactcctgtg aatatagcaa agagaagagg cgaatgaaaa aaaaaaactc tcctgggggc
     2461 atgtttgtga gaaggttcta atcagtgcag taaggttaaa taaagccttg attttccttc
     2521 actttagagg tatgtgaata gatagaaatc cttcagttct gaaggtgaaa atgttataca
     2581 tcaaacagac ttaaaaattc catggactta ggatattttt tatatgcata tatatgcaag
     2641 ccaacatcta tgagaaataa ttttgcaagt attcatataa actgtgaact atgagatggt
     2701 ataatctaat agtcaaagga aatccaattc tagataataa aattattaaa atgatactat
     2761 ggcttcacaa taaa
//
