LOCUS       XM_039087714            6460 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ANKRD40 C-terminal like (Ankrd40cl),
            mRNA.
ACCESSION   XM_039087714
VERSION     XM_039087714.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087714.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6460
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6460
                     /gene="Ankrd40cl"
                     /note="ANKRD40 C-terminal like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 99% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120095278"
                     /db_xref="RGD:41070601"
     CDS             5042..5419
                     /gene="Ankrd40cl"
                     /codon_start=1
                     /product="putative ANKRD40 C-terminal-like protein"
                     /protein_id="XP_038943642.1"
                     /db_xref="GeneID:120095278"
                     /db_xref="RGD:41070601"
                     /translation="MNPHLPAEPHDSKPDTTGLELVLKVRIQDSRENDFIEIELHRQE
                     LSYQSLLQVSCSELGVPPEQVEKMRKLPNTVLRKDKDIQRLQDFQEIELLLVKSGNPE
                     WTQHTSPRTETPCYNSNAAKMTY"
ORIGIN      
        1 agggccttgc gcttgctagg caagcgctct accactgagc taaatcccca accccagcag
       61 tgagtgttct taaccactga accactcttc agtcctgggg tcggggagtg ggatcggact
      121 ctttaaatgc atggaaagga agataagtaa aaacaccctc aaaaagaaca agacgaggag
      181 gggaaaagaa aacaaattac agaagcaacc tcatgatgtt ctgtcagcat gggggaccag
      241 tgtgcctggc cttcagtcca gcgatcctgt gcctaagaat ttccctgtag agactcacag
      301 aggtgtttag gtagacaggg gtctggaaat gtgggcttca ataaggaatc aggtaggaaa
      361 caccagagcc atgccctgaa ataccctggt gcagcccata aaaggaccta caatttcctc
      421 agagggaatg tggccgcctg tagaggtttt tctttagtga gtctattggt ttttgcgaag
      481 gccccaaaca ctcaaatact gttgagttgc ttcagtctca catcctaaca gcggggtttt
      541 tgtttttcct ttatcttttc ttgttgtcat ggcgacaaga tacccaagat gaacaactga
      601 aaaaaaacga tttcatttgg cttccggttt cataaggcac cactgctgtg ggacaccttg
      661 ttgatgtaga gcactactcg gtgggacact ggaaaagcaa ggctgttctc atggcaaccc
      721 agaagcactg atgaaaggac tgacccctcc cccacctcag tgagccactt cctccagcta
      781 ggctcacctc ctagttagca ctcttatgac ccaataacct cagtggcact gccggctgga
      841 acaatgggcc tttgtgggga gaggtcccat ccaaatccaa gacgctaata ttttctggag
      901 caagtagcca ggtttctcaa cccatccctc cccgtacagt ttatcagata ggaaagtgtg
      961 tttggcccca gactcactga agaggccttt ggggctcagt ggtttcacac cactggatct
     1021 tttaggacca caagactctc caggtatctt ttccatacac atgggtatgc agaatgctct
     1081 ataagctggt taccaaacca cttgcttcca tactgacctc agtcattcaa aagacattcc
     1141 cccaaatact atgtaccaac agttaaacaa cagggctgtg ggcatagcac agttggtaga
     1201 gtgcttgcct agcgagcaca agtccctggc tgggttcaat ccccagcacc atgtaacgca
     1261 ggtgtgctgt actccagtaa tcccagcact tggtagaggt aagggggtca taagttcaag
     1321 gtcatcctca actgcttagg gagtgggagg gcagcctggg atactggaga ctttgtctct
     1381 aaagtaaata attaacagga gcttacagag gcagaatcct gggcatgaga aaagtcttga
     1441 aaaatgttcc ttattgttca tatgagcatg atgtgtgtgg acatatgtgt tccacagtgt
     1501 ggaggtcaga gggcaactta gagccgtcag ttctttcctt ccaaacttaa gtgggttcca
     1561 aggatggagc tccggttgca tgcaggtttg cacagcagcg aagcttgctg cctcatttct
     1621 gagtacatgc gctcaccctc tgtctctgtc tctgtctctc tctctctcac acacacacac
     1681 acacacaccc tccctctgca tgggtacaca aggaatatgg tcttagcctc ccctggaaaa
     1741 actgccttta ttctattata caccctgtac tgtacaccct gtctttggct gggggagggt
     1801 cagcagggca gtttttgctt ttcaaagcga tgtggtacaa atatccttgg aaaactactg
     1861 tggaaaaagg gcagcctttg aagacccata aaaatttgtc tcctaggctg ggagcttacg
     1921 cagtggtaac ggccacatat gaagatgcgg ggtcacttag tggagttggc tctctccttt
     1981 cacccttagc tgggcttggg aacccgggtc gtaaagtttg gtggcacttt tagctgctga
     2041 tccatctgac cggcccgcag accactttaa aaaaacaaaa tttaaaaaaa agcaagaatg
     2101 gttagggggg gaaatgtcag aaaatagaag ctgtgagggg ggtctagctc tcctggccgt
     2161 gggaattaca gtataatcct ctgtaattaa acctatgatg tcttagcatg agttagacaa
     2221 gacaccagtg ggcagatgga atggagaaag cggtgaatct ccaatcacct ggcaggaggg
     2281 gacatagaag aaaagcagtg ggtgctgctg ggtgactgag tgcacacatg ggctgccaga
     2341 cagtgtggga tgagtggagg ctcccctcag ctgcagccca gtcccactga gccaggttca
     2401 acaggtgggg tgattcaggg tgctggttta tgactcacca caccctggca gcctggctgg
     2461 ccaaagtaca tttccatacc catgctcagg ccagagcagg cagacctgcc tcctcctgtc
     2521 accccttcct tcctccatgc atggcaggaa gtcaccatca gcatagcgtc tatgtgccta
     2581 attggccatg tgattgacag cgtttcattt ccttgaacct gtttcctcac ttggagcagg
     2641 gctccccaca gtagcctttt gttagtcatt tagggggctt cgaccacccc agcgcctacc
     2701 cagtgcacag acgatctaac gcagactccc cgtaggctgc ccaggcagcc agtttcttgc
     2761 agttaggtgc gcatgtgatc taaaacccgc tcactggatc tatcacccac ttgctgtttc
     2821 ctgccacagg aatgctaaac aagaagggtc ccagttcatg cctctcctgc ttcactgcct
     2881 gcttttaaga gtctgggaca gtggcctcgc tggggacttt gtccagatcg ctcacccttc
     2941 cccaagtctc ctgcgccggt ctacccctag cacttagtgc ttgcaatcaa ggggtcacat
     3001 tgacaagaca gcctgcccag gggctgccac cttctttcca gtcatgcaca gcaaccaagg
     3061 gtttgggaga cggaatgttt aatcctagga attaagggct agacatttct aatcccgatg
     3121 tagatcaata aatcttttcc aaagaaagcc tgacactggt ggagggtccc caggtgcctg
     3181 tctggtcgct agtactcaga gcagagcgaa gagctccact cacaccctga gtcatatcca
     3241 ggggtcagag cctaggaggg agtgagaatc acttgcagcg cactatacaa atcacatggc
     3301 acacctaagc ctgttgactt agcaataaat ataaccttgc ccattttaca gggccagtaa
     3361 cagaacatac tatcttactg catgtacttg tgtcgaggca ctaggaaaca cagacctgtc
     3421 atggaggagc ctaaacaggg aatcagggag aagctggcag gtgagtctgg atcctgtccc
     3481 caacacagtc ctcgagggga gctgtggcag agacggtagt ggggaaggtg gtggcagtgg
     3541 gccagtcatg aacagagcaa cttagccaag ggttctgtcc caggaccagc tatacaaatg
     3601 caagcagcag ctggccgtgc ctggcactaa ctggtgctaa ggggcctcct gagcactcct
     3661 ttttcttgtc accctgtgaa ctagggcgga ttagcctcat tttcctggct agaaaacagg
     3721 tttggagcaa ttacacacct tgcccagggt aaagacctca gtgttaaagg aagcattcag
     3781 accccaatct gttgccaccc agttagattt gggaaagttc cgggataaag gagcagaaat
     3841 tcagaaacct atcgctccac tcacaaactc gtgtgagaca ctgcttggga cacacctcag
     3901 cctctgggca cagggttcag tcacttcatg gcagactgag gaatgggaca attctgccag
     3961 gtgagaaggg gctgtgctgg gcaagtctat ctccccacta ggggtaacat ggcactgctg
     4021 tacaagcagg gcctgcattt ggaagagagc caaagctttg ctggcttgaa atcattcaac
     4081 ttctatcctg gcaagagctg tgatctgcct tcagctcacc gcggaccagt gagtctttcc
     4141 ttattgccac ctgcctcttc tgccctgcaa aaactcactc taaagactca ttctctgtta
     4201 ctcttgtggt gttgggaatc aaacacaggg cctcaggcat gacaggcaag tgctgtaatc
     4261 actgaacaat atcctcagcc ctacaaggct tctttttcct taaattaaat ttatttatta
     4321 caagtatgtt agcacactgt ctatagctgt cttcagacac accagaagag gacatcagat
     4381 cccattacgg atggttgtga tccaccatat gggtactggg acttgaactc aggacctctg
     4441 gaagagcaga cagtgctctt aactgctatc tctccagtcc accctacaag gtttttaagg
     4501 aagattttta atacttcctt ctctgcccat gggtcagaaa gtttctctgt atgaccgggc
     4561 ctttctacta tgcagcttca ctagagacct ggaaaaccaa acagtgcata ccaaaatacc
     4621 aacagaaacc taaggcacag attgtaaata ttcctctccc agattagaca ccactttata
     4681 gacttggctt cctttgatga tttggtaatt aagaataaat cactcaagac tagaactagg
     4741 gcctgtggga tgggcagctg ccacataagc ctaaaacccg aatccagtca tcagagcaca
     4801 cattaaaggt ttcacacgtg caccatggta tgccccaccc agaaacaaac ctttattatc
     4861 tctttaaggt taaaactagt ccttttcctg gcctaccgtg aagggagaat aggcttgggt
     4921 ggagggagga atagacagac aggaccactt cctcatctga gcaggccccg ccaagtactg
     4981 gaactaccgc ttctgagacc atctcattcc taattctctc ccaggacaaa gtcaacaagg
     5041 catgaaccca cacttgccag ctgagcctca tgacagcaaa cctgacacta ctggtctaga
     5101 gctggtgctt aaagtaagaa ttcaggactc cagagaaaat gacttcattg aaatcgaact
     5161 gcacagacaa gagttaagtt accagagcct cctccaggtg agctgctccg aactgggggt
     5221 tcccccagag caagtggaga agatgagaaa gctgccaaac acagtgctcc ggaaggacaa
     5281 agacattcaa agactgcagg actttcagga gatagagctc ctcttggtga agagtggaaa
     5341 ccctgaatgg actcaacaca cgtcacctcg gacagagaca ccgtgctaca atagcaatgc
     5401 ggcaaaaatg acgtactagc cccaggtctg gaaccattct gtcaacgagg ccaggcccag
     5461 gtgacaatct ggctgacaac gaaccttgga aaatgttgtc tacaacttct gagtaggaac
     5521 tgtttgacaa gcaagcacag ctacagcccc cacgagaggc caagtttatt ttgaacacct
     5581 gagctacgcc tatgcccagc cccacttacc tacacactga aatgacttat ggtctgagta
     5641 aattaacttt ttcagaatga gacaatcttg tgaaaacagc tcatagctgc agtcagtggc
     5701 agcgtcacta gcaggactta aaggctggca gtcatcaaac tggtcttctc aagcccactt
     5761 ttgtattaaa taactcactt cataagcact cagatgtaac tcacccactc tttttttttt
     5821 tttttttttt tggttttttt tttcggagct ggggaccgaa cccagggcct tgcgcttcct
     5881 aggcaagtgc tctaccactg agctaaatcc ccaacccctc acccactctt tacaaagcca
     5941 ttgctccttg actagagtca cctctgatcc ttatgacatg agttttgtca aaacaccagg
     6001 actcctcaca gaccaacaca tctatttgca ttcctagcca ctgagattag agggcaggta
     6061 aggacacaca gtaggcatta cccaacgact gttgggaggg cttgtaaaac atgctgtctc
     6121 cagtggccca acaacagctg actgcgacca ggcaggatga tcttcaggtg acaactccct
     6181 tcactgtgct tcatttccaa taggaaaatt tacgcaggag ctcaagattg cttaggttaa
     6241 taggtagaaa taattatttg caaaatgttg aagattgctt tcaattagtc aaattgaatt
     6301 gaaatagaaa ctagtgagga gggtaatgtt attctctacc ctaatggcag aacctagtag
     6361 gtgctgtcca gtggctagtt acagtacaaa cagcaatcca gtcaaagtta gtgagaaaat
     6421 tcttacctgc tctaataagc atactccact ccaaaacaga
//
