LOCUS       NM_001134699            3412 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus ankyrin repeat domain 40 (Ankrd40), mRNA.
ACCESSION   NM_001134699 XM_001074879 XM_001081287
VERSION     NM_001134699.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166790.1.
            
            On or before Sep 5, 2008 this sequence version replaced
            XM_001074879.1, XM_001081287.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166790.1, SRR8487230.108983.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..3412
                     /gene="Ankrd40"
                     /note="ankyrin repeat domain 40"
                     /db_xref="GeneID:690586"
                     /db_xref="RGD:1594678"
     exon            1..337
                     /gene="Ankrd40"
                     /inference="alignment:Splign:2.1.0"
     CDS             204..1295
                     /gene="Ankrd40"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 40"
                     /protein_id="NP_001128171.1"
                     /db_xref="GeneID:690586"
                     /db_xref="RGD:1594678"
                     /translation="MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNG
                     WTCLHWACKRNHGQVVSYLLQSGADREILTTKGEMPVQLTSRREIRKIMGVEEADDDE
                     EIPQLKKESELPFVPNYLANPAFPFIYTPAAEDATQLQNGGPSPPPVSPPAEGSPPLL
                     PPTEPPLLGAFPRDHTSLALVQNGDISAPSAILRTPESTKPGPVCQPPVSQNRSLFSV
                     PSKPPVSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIE
                     LDRQELTYQELLRVSCCELGVNPDQVEKIRKLPNTLLRKDKDVARLQDFQELELVLTI
                     SENNFLFRNPASSLTERPCFNRRASKLTY"
     exon            338..486
                     /gene="Ankrd40"
                     /inference="alignment:Splign:2.1.0"
     exon            487..966
                     /gene="Ankrd40"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1148
                     /gene="Ankrd40"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..3384
                     /gene="Ankrd40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctgggcctg cgggcctcga gcagctgggg atctgccggt gggcgggagg gagcacgagg
       61 ccccgggccg ggcgcgggcg gaggcgcgag tggggcgggc gagcccggcg ctccctcccc
      121 atggccggga gcgggccgcg gaggcggcgg cggcgctgac aggctcaggg cggggcggcc
      181 gggggcccgg ggccctgggg aagatgagcg ccctcctaga gcagaaggag cagcaggaga
      241 ggctgcggga ggcagcggcc ttgggggaca ttcgggaggt gcagaaactg gtggagagcg
      301 gggtggatgt gaactcccaa aatgaggtca acggctggac ctgtttacac tgggcatgta
      361 aacgcaacca tgggcaggtg gtatcctacc tgttacagtc gggagctgac agagagattc
      421 ttacaacaaa aggagaaatg ccggtacaat taacatcaag gagagaaatc aggaagatta
      481 tgggagtgga agaagctgat gatgatgagg agattcccca gctgaagaag gagtcggaac
      541 tgcccttcgt tcccaactat ctggccaacc cagccttccc tttcatctac acgcctgcag
      601 cagaagacgc cacccagctg cagaatgggg gcccctcccc acctccagtg tctccccctg
      661 cagagggctc gcctccattg cttcccccca cagagccccc tctgctcgga gcctttccta
      721 gggaccacac ctctttggca ttggtccaaa atggtgatat ttctgccccc tctgccatac
      781 ttagaacacc agaaagcaca aaacctggtc ctgtctgtca gccaccagtg agtcagaacc
      841 gctccctgtt ctctgtccca tccaagccac cggtgtctct ggagcctcaa aatgggacat
      901 atgcaggacc agcgccagca ttccagccat ttttcttcac cggagcattt ccatttaata
      961 tgcaagagct ggtactcaag gtgaggattc agaacccatc tcttcgtgaa aatgacttca
     1021 ttgaaattga actggatcga caggaactca cctaccaaga actgctcaga gtgagttgct
     1081 gtgagctggg tgttaatcca gaccaagtgg aaaagataag aaagttaccc aatactctgt
     1141 taagaaagga caaagatgtt gcacgactcc aggacttcca ggagctggaa ctggttctca
     1201 caataagtga gaataatttt ctgtttagaa accctgcatc ctcactgact gagaggcctt
     1261 gcttcaaccg gagagcttca aaactgacat actaatgcag cagggacaat actctatcac
     1321 tgagtattgt gacagtaggt gtcacctctg ggccaaagga caagccattg atcccaaagc
     1381 ctcggatgcc cgccagggcc cctggtgcca ctgcacagtg ttcactaaca tcctgcctgg
     1441 gcaggcggga accccgaccc ccagcagcgg tgctgctctt ccaagcctct tggtgcacaa
     1501 taaccctatt gctgagtctt tgagcagctg gaaaatcgtc ttgagaggca gcggccgaag
     1561 gtacgagagc cagtgtttta cgtgtggaat ctagagagtt gttgaagcag aaaccgagag
     1621 tgtggacccg tttctagcca ctcctgttga cagtgcgccc gacgggccgg gcgcgtttct
     1681 cttgatgttg catgctcatg acactcaaga aattttgaac tgactaggga gggagactgg
     1741 ggaaagcaag cacaggtact ggacaaaggg attccggtgc gacctgtggc tgtgaggtct
     1801 catatagcat atttataaac gttactcagg tttaaagtat ttaaaaatgt agttacctaa
     1861 ttgtaaatag gctgttaacc aaaagagctt cccctccccc agttttcttt tatgaccact
     1921 catgactacg gctgtctcac agtcatcttc acatctcccc tcctcagtca ctagagggct
     1981 ctctaatgct ttctaaaggg gccaccacct tgctcagagg ccgctcctgt cacccgttta
     2041 attgcgccat ccaagaagag cacaagctgc tggtccttcc atcattctca ccccccagga
     2101 acgaagagca gcttttgagc ctggatttgt tgctgtttta aaggttattg tgggaaaccg
     2161 aactaaagga gttagcatct ttatttttat atcaaagata aaggttattt tggaaattat
     2221 tagggttttt acataactct gaagtctgtt gcttttgtaa acaaatcgtt caatcttagg
     2281 aattccccgt tacctccaca gtcagttgtg aggacctgat tcgactctgg agcgtggggt
     2341 acgaatcttc tccaagagtc attcaagagt cttcccctcc ttggcatcat taaggttgac
     2401 aagcctctgt ttgcttaact ttacaaagga cctggcccac atagaggagc aggagagcag
     2461 ggctggagta gggttgacca ggatccctgc tgtcttaagc tttttcccca tagtgcctat
     2521 agtttccaaa gaaacttaac ttcctgggta ttaattttat tagaacactg cagttgactg
     2581 gaaacatgca gatgcactgg aagagagcat tgtgctgagg taatggcctc ccactgccgc
     2641 ctgagtgccg aaatgagctt gagtgttctt caaagctagt gtcatggggt cactgtggag
     2701 tgactgcatg gtacccaccc ctggcacagc tggtgacccc ccgtagagcg tctgcatagc
     2761 agagtggccg ttgctcatca ccctttcccc aagtgcttta ctgaagacac ctcccttgtg
     2821 tttcaaccaa ctactactta gtgtactaac tttttttcct ctaatttgct ttgaaaaact
     2881 ttagtaattc agttaactgt gattctatct tggaagaaat aaactcagta ttaattcatg
     2941 tctaaattac tggggttcag actccttcag ccaccctagt tgattagaga ttctgagaag
     3001 cagtgggatt tggctgggag gtggatgaca caagagcaat cgagcacttc agagtgacca
     3061 aaggtcatgt cccccatggc tctgcccagt gtcctgtcct ttgccacagt cctctggggt
     3121 cagtgtctct ggcagtggga tgaaactgca tggttgctct taggggagtt ccgagtctta
     3181 atctatgcat tcagagaaat atttttatat gctttgtgta attgataatg agggattttc
     3241 ttttaaactt tgttaactga atgcacctct cctccactgc atatttaaag catgtgttca
     3301 cccatgtaaa cattcataga agacatttcc tcatgtgttg ttgactcttt aaacataaca
     3361 ggtattatta aaattaaaca ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
