LOCUS       NM_001135014            1095 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ankyrin repeat domain 39 (Ankrd39), mRNA.
ACCESSION   NM_001135014 XM_001056809 XM_346038
VERSION     NM_001135014.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Sep 19, 2008 this sequence version replaced
            XM_001056809.1, XM_346038.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.812419.1,
                                           SRR26360181.1145955.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-132               JAXUCZ010000009.1  46285912-46286043   c
            133-236             JAXUCZ010000009.1  46281840-46281943   c
            237-440             JAXUCZ010000009.1  46280894-46281097   c
            441-1095            JAXUCZ010000009.1  46277659-46278313   c
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..1095
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /note="ankyrin repeat domain 39"
                     /db_xref="GeneID:367251"
                     /db_xref="RGD:1559504"
     exon            1..132
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..584
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /codon_start=1
                     /product="ankyrin repeat domain-containing protein 39"
                     /protein_id="NP_001128486.1"
                     /db_xref="GeneID:367251"
                     /db_xref="RGD:1559504"
                     /translation="MAAPQSCADGSCCSHPGAVPGVQQTLEEMDFERGIWSAALNGDL
                     GRVKHFIQKATDPSQPDSAGYTALHYASRNGHYDVCQFLLENGAKCDARTNGGATALH
                     RASYCGHTEIARLLLSHGSNPQLVDDDGMTSLHKAAEKGHEDICSLLLQHSPALKTVR
                     DRKARLACDLLPCNSGLWDLLAS"
     exon            133..236
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /inference="alignment:Splign:2.1.0"
     exon            237..440
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /inference="alignment:Splign:2.1.0"
     exon            441..1095
                     /gene="Ankrd39"
                     /gene_synonym="RGD1559504"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggagcgcgt ggctgcaatc ccggcagccg ggatggcggc acctcagtcg tgcgcggatg
       61 gctcctgctg ctcgcaccct ggtgcggtgc ccggggtaca gcagacactg gaagagatgg
      121 acttcgagag gggaatctgg tcggccgccc tgaatggaga cctgggccga gtgaagcatt
      181 tcatccagaa ggccacagac cctagccagc cagactctgc tggctacact gcactgcact
      241 atgctagccg caatgggcac tatgacgttt gccagtttct gctagaaaat ggagcaaagt
      301 gtgatgcccg gaccaacggg ggcgccacgg ctttgcaccg ggccagctac tgtgggcaca
      361 cggaaatcgc acggctgctg ctttcccatg ggtccaaccc ccagctggtg gacgatgacg
      421 gcatgaccag tctacataag gctgccgaga agggtcatga ggacatttgc tccctcctgt
      481 tacaacacag cccagccctg aagactgtcc gggatcgcaa agcacgccta gcatgtgacc
      541 tgctgccctg caacagtggc ctgtgggacc tgctggccag ctgaggctcc tcctcctgtg
      601 tctggctgcc cttgaagggt gcacagacta gctctccctg cccccaactt gtaccaaccg
      661 catcgtgctg ccgggaccag ggccggaatg ccctgaagag cccggtctgg ccagtgtggc
      721 agccggcagg ggaagacttg ggagcctaga caggcgatca tataagcgaa tccatgtaga
      781 gatacatagc catttgaaag aaaataaagc tcatctcttg atgtcatccc acggacaaag
      841 atgaatttca aaatgcagca ttcggaagct aaaaacacaa aactttgaag tattagagaa
      901 aacatggggc tggagagacg gctcagtggt ttagagcact gactgctctt ccagaggtcc
      961 tgagttcaaa tcccagcaac cacatggtgg ctcataacca tctgtaatgg gatctgatgc
     1021 cctcttctgg tgtgtctgaa gacagctaca atgtacttat atataataaa taaatcttgg
     1081 gaaaaaaaga aaaaa
//
