LOCUS       XM_039094978            3500 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat domain 28 (Ankrd28),
            transcript variant X2, mRNA.
ACCESSION   XM_039094978
VERSION     XM_039094978.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 18, 2024 this sequence was replaced by
            NM_001427331.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3500
                     /gene="Ankrd28"
                     /note="ankyrin repeat domain 28; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 163
                     samples with support for all annotated introns"
                     /db_xref="GeneID:306264"
                     /db_xref="RGD:1559931"
     CDS             339..3500
                     /gene="Ankrd28"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase 6
                     regulatory ankyrin repeat subunit A isoform X2"
                     /protein_id="XP_038950906.1"
                     /db_xref="GeneID:306264"
                     /db_xref="RGD:1559931"
                     /translation="MAFLKLRDQPSLVQAIFNGDPDEVRALIFKKEDVNFQDNEKRTP
                     LHAAAYLGDAEIIELLILSGARVNAKDSKWLTPLHRAVASCSEEAVQILLKHSADVNA
                     RDKNWQTPLHIAAANKAVKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLL
                     SRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGM
                     ISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNERGFTPL
                     HFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDC
                     EDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLL
                     SSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCN
                     YQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNA
                     VHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQAL
                     EVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYVLKRTPIHAA
                     ATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAK
                     DKWGRTALHRGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQ
                     SATSVDANPAIVDNHGYTALHWACYNGHETCVELLLEQDVFQKIDGNAFSPLHCAVIN
                     DNEGAAEMLIDTLGASIVNAPDSKGRTPLHAAAFTDHVECLQLLLSQNAQVNSADSTG
                     KTPLMMAAENGQTNTVEMLVSSASADLTLQDKSKNTALHLACGKGHETSALLILEKIT
                     DRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVDENGYTPALACAPNKDV
                     ADCLALILATMMPVSSNSPLTSLTFNAINRYTNTSKTVSFEALPIMRNEPSSYCSFNN
                     IGGEQEYLYTDVDELNDSDSETY"
ORIGIN      
        1 gggcggtggt ggtaatattg tggagtggag tttggatgcc gccgcggccg cgggctggag
       61 cggcgcggcg gcgggggctg ccagggtatt tcgggaaggg ggtgtgaggc ggcggcgaag
      121 gcggcggctg cgtgtgggag gtggctgaga gggagaggga gagaaaggac ggaagaaaga
      181 gggcgggagt cctcggtgga ggaggcggga ccggcggggc tcttcgcggc ggcggcgggc
      241 ggccggggag gcggcgccgc cccctgcccg cgctctcttc aacgtagccg gccacctacc
      301 cgccgggcgc gggtagtggc ggaacggagg cgaccgccat ggcgttcctc aaactccgcg
      361 accagccatc actggtgcaa gctatattta atggtgatcc agatgaagtt cgagcactaa
      421 tatttaagaa agaagatgtt aactttcagg acaatgagaa gagaactccc ttgcatgctg
      481 ctgcctatct tggtgatgcg gaaatcatcg agctgcttat tttatctgga gctagagtta
      541 atgccaaaga cagcaaatgg ttgacacctt tacacagagc agttgcatct tgtagtgagg
      601 aagcagttca gatacttttg aagcattctg ctgacgttaa tgctcgagat aagaactggc
      661 agaccccgtt acatatcgcc gctgccaata aagctgtgaa gtgcgccgag tctttggtcc
      721 ctcttctgag caatgtgaac gtgtcagacc gggcagggag aaccgcatta caccatgccg
      781 ctttcagtgg gcatggtgag atggtcaagc tactcttgtc cagaggtgcc aatattaatg
      841 cttttgacaa aaaagatagg cgtgcgatcc attgggcagc atatatgggt cacattgaag
      901 tagtgaaatt acttgtatct catggagctg aagtgacgtg taaggataag aagtcttaca
      961 cacctcttca tgcagcagcc tctagtggga tgatcagtgt agtcaagtac cttctagatc
     1021 ttggagttga tatgaatgaa ccaaatgcct atggaaacac acctcttcac gtggcctgtt
     1081 acaacggaca ggatgttgtt gtaaatgagc tcatagactg cggtgctaat gtgaatcaga
     1141 agaatgagag agggttcact cctctgcact ttgctgctgc atcaacgcat ggagcgctgt
     1201 gtttagaact tctggttggc aatggggccg acgtcaatat gaagagtaaa gatgggaaga
     1261 cccccctaca tatgactgcc ctccacggca gattctccag atcgcaaacc atcatccaga
     1321 gtggagctgt gattgactgt gaagataaga atggaaacac ccctttgcac atagcagccc
     1381 ggtatggcca tgaactgctg atcaacactc ttatcacaag tggtgctgac actgcaaagc
     1441 gtggtattca tggaatgttc ccactccatt tggcagcctt aagtggtttt tcagattgct
     1501 gcaggaaact cctttcttca ggatttgaca tagatacccc agatgatttt ggcagaacct
     1561 gtctacatgc agcggcagct ggaggaaatt tggagtgcct aaaccttctg ctgaatactg
     1621 gtgcagactt caacaaaaag gataaatttg gaagatctcc acttcactat gctgctgcca
     1681 attgcaatta ccagtgcctg tttgctcttg tggggtcagg agcgagtgtg aacgacctcg
     1741 atgaaagagg ctgcacaccc ttgcactatg cagctacgtc agacacagac ggcaagtgcc
     1801 tggaatactt actaagaaac gatgcaaatc ctgggatccg ggacaagcaa ggctacaatg
     1861 cagttcatta ctcagctgca tatggtcacc gtctgtgtct tcaactgatt gcaagtgaaa
     1921 cccctttaga tgttttaatg gaaacctcgg gaacagacat gttgagtgat tcagataaca
     1981 gagcgacaat aagcccttta catttagctg cttatcatgg tcaccatcaa gccctggaag
     2041 tgttggtaca gtctttgtta gatctcgatg taaggaatag tagtggcaga acacccttag
     2101 atcttgcagc atttaagggc catgttgaat gtgtggatgt actcattaat cagggagctt
     2161 caatcctcgt aaaagattac gttttgaaga gaacacctat ccatgcagca gcaacaaatg
     2221 gtcattcaga atgcttacgg ttattaatag gaaacgcaga accacagaat gcagtagata
     2281 ttcaagatgg gaatggacag acacctctta tgctgtcggt tctcaacggg cacacggact
     2341 gtgtatactc actactgaat aaaggagcaa atgtagatgc caaagataag tggggaagga
     2401 ctgcattgca cagaggggca gtgacaggcc atgaagagtg tgtagacgcg ttacttcaac
     2461 atggtgctaa gtgcttactc cgggacagca ggggtcggac acccatacac ttgtcggcag
     2521 cctgtggaca cattggagtt ctaggagccc ttttgcagtc agcaacatcc gtggatgcga
     2581 atccagccat agtagacaat catgggtata cagcacttca ctgggcttgc tacaatggtc
     2641 atgagacatg tgtggaacta cttctagaac aagatgtttt ccagaaaata gatggaaatg
     2701 cttttagtcc actgcattgt gccgtgatca atgacaatga aggagctgct gaaatgctta
     2761 ttgatactct aggagctagc attgtgaatg ccccagactc aaagggaagg actcctctcc
     2821 atgctgccgc cttcacagac catgtggagt gtttacagct gctgctcagc cagaacgctc
     2881 aggtcaattc tgcagactct acgggaaaaa cccctctcat gatggctgca gaaaacggac
     2941 aaaccaatac agttgagatg ctggttagca gtgccagtgc agatctgaca ttgcaggaca
     3001 agagcaaaaa caccgccctc cacctggctt gtggcaaggg tcatgaaact agtgccttgt
     3061 taattctgga aaagataaca gatagaaacc tcatcaatgc caccaacgca gccttgcaaa
     3121 cacctctgca tgttgctgcc cgaaatgggc taacaatggt ggtccaggag ctcctgggga
     3181 aaggggcaag tgtgcttgcc gtcgatgaga acggctacac cccagctttg gcctgtgctc
     3241 ccaataagga tgtggctgac tgcctggctc tcattttggc caccatgatg cctgtctcat
     3301 caaatagccc attgacatcc ctgacattca atgccattaa ccgttatacc aacacctcaa
     3361 aaacagttag ctttgaagcc ttgcctatca tgaggaatga acccagctcc tactgcagtt
     3421 tcaacaacat tggtggggaa caggagtact tgtacaccga tgtggacgag ctcaacgact
     3481 ctgactctga gacctactga
//
