LOCUS       NM_001399649            2642 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ankyrin repeat and MYND domain containing 2
            (Ankmy2), transcript variant 1, mRNA.
ACCESSION   NM_001399649 XM_017594134
VERSION     NM_001399649.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Jensen,V.L., Bialas,N.J., Bishop-Hurley,S.L., Molday,L.L., Kida,K.,
            Nguyen,P.A., Blacque,O.E., Molday,R.S., Leroux,M.R. and Riddle,D.L.
  TITLE     Localization of a guanylyl cyclase to chemosensory cilia requires
            the novel ciliary MYND domain protein DAF-25
  JOURNAL   PLoS Genet 6 (11), e1001199 (2010)
   PUBMED   21124868
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 12, 2022 this sequence version replaced XM_017594134.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.8844.1,
                                           SRR26643285.24553.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-263               JAXUCZ010000006.1  58616251-58616513
            264-328             JAXUCZ010000006.1  58624421-58624485
            329-467             JAXUCZ010000006.1  58628308-58628446
            468-566             JAXUCZ010000006.1  58634312-58634410
            567-727             JAXUCZ010000006.1  58641455-58641615
            728-942             JAXUCZ010000006.1  58645546-58645760
            943-1078            JAXUCZ010000006.1  58646476-58646611
            1079-1207           JAXUCZ010000006.1  58653876-58654004
            1208-1337           JAXUCZ010000006.1  58655126-58655255
            1338-2642           JAXUCZ010000006.1  58656330-58657634
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..2642
                     /gene="Ankmy2"
                     /note="ankyrin repeat and MYND domain containing 2"
                     /db_xref="GeneID:314046"
                     /db_xref="RGD:1306017"
     exon            1..263
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     CDS             197..1507
                     /gene="Ankmy2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     guanine nucleotide binding protein, alpha 14; ankyrin
                     repeat and MYND domain-containing protein 2"
                     /codon_start=1
                     /product="ankyrin repeat and MYND domain-containing
                     protein 2 isoform 1"
                     /protein_id="NP_001386578.1"
                     /db_xref="GeneID:314046"
                     /db_xref="RGD:1306017"
                     /translation="MGHIKKGELTQEEKELLEVIGKGTVREAGTLLSSKNVHVNCLDE
                     NGMTPLMHAAYKGKLEMCKLLLRHGADVNCHQHVHGYTALMFAALSGNKDITWAMLEA
                     GAETDVVNSVGRTASQMAAFVGQYDCVAIINNFFPRERLDYYTKPQGLDKEPKLPPKL
                     AGPLHKIITTTNLHPVKIVMLVSENPLLADAAALGKCYKVMDLICEKCMKQRDMNEVL
                     AMKMHYISCIFQKCITFLKEGENKLDALIKSLLKGRASDGFPVYQEKIIRESIRKFPY
                     CEATLLQQLVRSIAPVEIGSDPTAFSVLTQAITGQVGFVDVEFCTTCGEKGASKRCSV
                     CKMVIYCDQICQKTHWFAHKKMCKSLKDVYEKQQTEAAKQKRQEEANANSNHVNEDEP
                     EAEVGISHEDPTPGESVEREEEASKEAELGSAQDAPAGPQLSEE"
     exon            264..328
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            329..467
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            468..566
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            567..727
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            728..942
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1078
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1207
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1337
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..2642
                     /gene="Ankmy2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccagcccgg ctcgctcaag ctcgccgcac ccgccggccc ccagccgcga gaccctggcg
       61 agtgccactt cactgggctg ctgctccggc ctcgagtttc cttgctccgg tcgtcatcca
      121 cgacgcacac acgtctctgg tgttttttaa aaaacctttc caaagaaata gaataagcgt
      181 caagctggcg ggaacgatgg gtcacataaa gaaaggcgag ctgacccagg aggaaaagga
      241 actgttggaa gtgatcggaa aaggtaccgt ccgagaagcc gggacactgt tgtctagtaa
      301 gaatgttcat gtcaactgct tggatgagaa tggaatgact cctttaatgc atgcggcata
      361 taagggaaaa cttgaaatgt gcaaattgct tctgcgacat ggagctgatg tcaactgcca
      421 tcagcatgtg catgggtata cggccctcat gtttgccgca ctgtctggta ataaagacat
      481 cacctgggcc atgctggagg cgggagcaga gacagacgtt gtgaactcgg tgggaagaac
      541 ggcctcccag atggcagcct ttgtgggtca gtatgattgt gtggctatca tcaacaattt
      601 tttccctcga gagagactgg attattacac caaaccccag ggactggata aggagccaaa
      661 actccctcca aagttggcag gcccactgca caaaatcatc accacgacga atctccaccc
      721 tgtcaagatc gtgatgcttg tgagtgagaa ccctctgctg gcagacgcag ccgctctcgg
      781 taaatgctac aaggtgatgg atttgatctg tgagaaatgc atgaagcaaa gagacatgaa
      841 tgaagtgctg gctatgaaaa tgcactatat cagctgcatc tttcagaaat gcattacctt
      901 cctcaaggaa ggggagaata agctggacgc cctgatcaaa agcttgttga aaggcagagc
      961 gtcggacggc ttcccagtgt atcaggaaaa gatcatcaga gaaagcatca ggaagtttcc
     1021 ctactgcgaa gctacactcc tccagcagct ggtgcgaagc atcgctccag ttgaaatcgg
     1081 ttctgatccc acggcgttct ctgtacttac ccaagccatc acaggacaag tgggctttgt
     1141 ggatgttgaa ttttgtacca cctgtggaga aaaaggagcg agcaaaagat gttctgtttg
     1201 taaaatggtg atatattgtg accagatctg ccagaagaca cactggttcg cacataagaa
     1261 gatgtgtaag agtctgaaag atgtttatga gaagcagcag accgaagctg ccaaacagaa
     1321 gaggcaggag gaagcgaatg ccaattctaa ccatgttaat gaagatgaac cagaggctga
     1381 agtgggtatc tctcacgaag atcccactcc tggcgagtct gtggaaaggg aggaggaagc
     1441 cagcaaggag gctgaactgg gcagtgcaca ggatgctcct gcagggccac agctgtccga
     1501 ggagtagaag ctgtcgacag tggccagcct gggtggactt catcctggca gatggctgca
     1561 gaacttcact ggccctgaca gtgcagggca cagtggcagg attgcacatc cctagaatag
     1621 aggctttcaa acaaagctgc ctcccacgcc atgatttcct gttgatttct gttctataat
     1681 tgaacaggca tttctgcgga taaaaaagtt tttttttcaa aataccccca aacaagtcca
     1741 ttcctttgct ggctccccag tgattgtaca caaaggaaag taaatcacct taaagaagaa
     1801 atctgggttc tagggaacaa agagaacagg gaggatgtga aagagaagtg atgtttaggg
     1861 aagaaggaat cgtgggcaca gagatgggca gagaaacaaa acgtacctgt gaatgttgtc
     1921 ctgaagttgt acatacaaag ctatcatgag gaattctccg tgctcctaaa gctttgtcat
     1981 atacagttaa gcctgctgta gtttaaatag gaattttcga gagcactttg aaccccgcgt
     2041 tccttgcagc gatactctgc atgatttgaa caatcagaaa ggttggatcc aaccctgggt
     2101 agtcactgta cacacttccc gtagagccac ccctgtacca tactctaccc ttcttaccta
     2161 ccaactctta ccttcccatc agcttttcat gaccctcctc ctgcccagaa atggatttat
     2221 agctgtcatt tcgacaatgt cccattctgc gttttcagtg tacgtggctt gtaagcaaag
     2281 cgggagtgtc gtgtctgaag aaggtgctgt ctttccgttt cctctgttgg ctttaaaata
     2341 aatctaccta catacacagt tcatcttgtc tcacagtttg tgttgagagg ctggatggca
     2401 aagaaggtaa caaataccaa ggctgacacc cgtaggggaa tgaagttaag attatataat
     2461 ctgtaagaca gttagagttc ttccttctct cagctgttca ggtcccgagt cctggttcat
     2521 tctaatcttc cttgtggccc tttttcttca gcctaagcac acgtatcccc ttctacatgt
     2581 atacagtcat tcagtgatga cctcacgtga gtaaactatt aaagttaact atggtattta
     2641 ta
//
