LOCUS       XM_039084739            5075 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat and MYND domain
            containing 1 (Ankmy1), transcript variant X1, mRNA.
ACCESSION   XM_039084739
VERSION     XM_039084739.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084739.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5075
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5075
                     /gene="Ankmy1"
                     /note="ankyrin repeat and MYND domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 11 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:684015"
                     /db_xref="RGD:1595229"
     CDS             39..3776
                     /gene="Ankmy1"
                     /codon_start=1
                     /product="ankyrin repeat and MYND domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_038940667.1"
                     /db_xref="GeneID:684015"
                     /db_xref="RGD:1595229"
                     /translation="MGGGRCRPRTVGEGLGRRWRWWWRWRWWWRRRWRRGAGTTGSRA
                     GSRPARPRAVRRPAQAGLGSHRGRCVRPRACAPRRRDRRSRTRGRTPWKAVRLQAARW
                     QLGLAGLSWRRDRRFPRDAGLKRREMEEVRSIVTLDSQGSKTFSSRGLEGQSGRSPDT
                     ESQHSSKSYTFFSRRDHPGDLREDEESEGTTGEEELKGTYMHLVQGVQEWQDGCVYKG
                     EFGLNMKLGHGEFSWPTGEIYRGQFYRDHYHGMGTYSWPDGSSFTGTFYLSQREGYGT
                     MYTKAKLFQGLYKEDQRFGPGIETYPDGSQDVGIWFREYLLKLCTRVPSSFSLINYPE
                     FSAFLTNTRKRISLSDEEKVEVSLSEEQDPFYYDYKQYLLNDDLKLPPEIHVYSTNNS
                     HLPMTNALRKELDNQIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKDAHAN
                     WNIAAILEGNRSKFGPSGPKEQISKKMIMKAEEGDYNWIFGILRDNLACADVADSKGY
                     TVLAAAAIHSHINIVNLLLDYGADVNKRSDEGITPLSMCFLQYYPSKSFHPNIAERTL
                     LQESPKPLVTPKISFLFADPNTDSSYDVGAHILGGEELKTSLLPSSSPEESLASMPPP
                     ESNNVLQKRDVSPVKTVSTEVEKETEDVAENVDASTLYSADTNFESTICLRNYSINVS
                     RDILEKSAQAYSSLVQHSCFPYKGTVRKLAQTMAERRNRWMTIMLLLRRGADPNLCQV
                     PMQALFLAVKAGDVEGVRLLLMNGAQTDIQYPPQLQSLTPLHIAASLPGEEGVKITEL
                     LLHAVTNVDAKAADQDYPYKGGKGDLPSSLKLNNEPGPPKSYYSPYTRIPEEGGRTAL
                     HVACEREDNKKCARDIVRLLLSHRANPNTLWSGHSPLSLSIASGNDLVVKELLAQGAD
                     PNLPLTKGLGTALCVVCDLFYEQQRSTDNKIALIDRLISYGADVLKPVTIVQGERTAV
                     GTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFIARKRLLEYLGLQLRLAVLNKESRL
                     DVKALYLSKRAELAPCHRMKKRSSSPAKSPSMEKQTLPFYKFCYQCGRSIGVRLSPCP
                     RCYGILTCSKYCKTKAWIEFHKKDCNDIMAMKKDLLAQRSQEPKSENNLWHINQASQT
                     VQLRKEEDQENQASKNAQFEKEDKDNQESKSVQFKKEDQDNQASKSIQFKESTEQKNQ
                     VSKSLQLKKNKEQDNQVSKSVQLKRDPEQKEVSLTRSCWTA"
ORIGIN      
        1 cactgcgccg ccatgaccac cgacgctagg tgaaatccat gggcggcggc cgctgcaggc
       61 cgcggacagt gggcgagggg ctcgggaggc ggtggcggtg gtggtggcgg tggcggtggt
      121 ggtggcggcg gcggtggcgg cggggcgcgg gcacaacagg aagtcgcgcc gggagccgcc
      181 cggcccgtcc ccgcgcggtg cgccgccccg ctcaggctgg gctcggcagc caccgggggc
      241 gctgtgtacg gccccgggcc tgtgcaccga gacggcgaga tcggcggagc agaacgcgag
      301 gcaggacgcc ctggaaggct gtgcgtcttc aggctgcgcg ctggcagcta ggacttgcgg
      361 gattgtcttg gaggcgggac cgtcgctttc ccagggacgc aggtttgaag aggagagaga
      421 tggaagaggt tcgttccatt gttaccctgg actcccaagg ctcgaaaact ttcagctcca
      481 gaggtctgga ggggcaaagt ggtcggtctc ctgacactga gagccagcat tcctcgaaga
      541 gctacacctt cttctccaga agggaccatc caggggatct cagagaggat gaagagtctg
      601 aaggcaccac aggagaggag gagctgaagg ggacctacat gcatctcgtc caaggggttc
      661 aggaatggca ggatggctgt gtttacaaag gggagttcgg actcaacatg aagcttggac
      721 acggcgagtt ctcttggccc acaggcgaga tctaccgtgg gcagttttac cgggaccatt
      781 accatggcat gggtacctac tcatggccgg atggctccag cttcacaggc acgttttatc
      841 tcagccaacg agaagggtac ggcaccatgt acacgaaagc aaagttgttc cagggattat
      901 ataaagagga ccaaaggttt gggcccggca tcgagaccta tcctgacggt agtcaggatg
      961 ttggaatctg gttccgtgag tacctcctca agctgtgcac aagggttccc agcagcttct
     1021 ctttgataaa ctacccagaa ttctcggcct tcctcaccaa cacgagaaag agaatcagtc
     1081 tttcagatga ggagaaggtg gaggtgagtc tttctgagga gcaggaccct ttctactatg
     1141 actataagca gtatctcctg aatgatgact tgaagctgcc tccggagata cacgtctatt
     1201 caaccaacaa cagtcacctg cccatgacca acgccctgcg caaagagctg gacaaccaga
     1261 tcttcatgaa cgagatccct ccattcattg aggatgaaga accctggctt ataacaaatg
     1321 agactccact gttggtcaaa atccagaagc aaacttacaa gttcaggaac aaggatgctc
     1381 atgccaattg gaacatagct gccatcctgg agggaaaccg cagcaagttt gggcctagtg
     1441 gccccaagga gcagatttcc aagaagatga tcatgaaggc tgaggaaggg gactataact
     1501 ggatttttgg aatcttgagg gacaaccttg cctgtgctga cgtggctgac tctaagggtt
     1561 acactgtgct tgctgctgca gctatacatt ctcatatcaa cattgtgaac cttctcctgg
     1621 attacggagc tgacgtgaac aagcgctcgg atgagggcat cacacccctg agcatgtgct
     1681 tcctccagta ttaccccagc aaatccttcc atcccaacat tgctgagagg accctgcttc
     1741 aggaatctcc taaacccttg gtcaccccca aaatttcatt cttgtttgcg gatccaaaca
     1801 cagactcatc atatgatgtg ggtgcgcaca tcttgggtgg agaggaatta aagacgtctc
     1861 tgctcccctc aagcagccca gaggaatccc tcgcctccat gccgcccccg gagtccaaca
     1921 acgtgcttca aaagcgagat gtctccccag tgaagactgt cagcactgaa gtggagaaag
     1981 agacggagga cgtagcagaa aatgtggacg ctagcacctt gtacagtgcc gacacgaact
     2041 tcgagtccac catatgcctg cgaaactact ctatcaatgt ctccagggat atcctggaga
     2101 agagtgccca ggcctacagt tcgttggtgc agcactcctg cttcccatac aaagggactg
     2161 tgaggaaatt ggcccagacc atggccgaac gcagaaaccg ttggatgacc attatgttgc
     2221 tgctacgtag aggtgctgat cctaacctat gccaagtgcc catgcaggct ctgtttcttg
     2281 cagtgaaggc tggggatgtg gaaggggtga ggctgctact gatgaatggg gcccagacag
     2341 atatccagta tcctccacag ctgcagtccc tgaccccact ccacatcgca gcttcactcc
     2401 ctggggagga gggcgtgaag atcactgaac tgctgctcca tgcagtcact aacgtggatg
     2461 ccaaggcggc ggaccaagac tacccataca aaggtggcaa gggtgatctg ccctcaagcc
     2521 tgaagctcaa caatgagcca ggcccgccca agagctacta ctccccgtac acacgcatcc
     2581 cggaggaggg cggacgcaca gctctgcacg tggcctgtga aagagaagac aacaagaagt
     2641 gtgccaggga tatcgtgcgg ctccttctgt cccatagagc gaatccaaac acgctgtgga
     2701 gtggccactc cccactctcc ctgtccattg ccagtgggaa tgacctggtt gtgaaggagc
     2761 tcctagccca gggagctgac cccaacttgc ctctgaccaa aggcttgggc actgccctgt
     2821 gtgttgtgtg tgacctgttc tacgagcaac agaggagcac cgacaataag atcgccctga
     2881 ttgaccggct cattagctac ggggcggatg tcctgaaacc tgtgacaatt gtgcaaggtg
     2941 aaaggacagc cgtgggcaca gcagttgatt atggctactt caagttctac caggaccgga
     3001 agatcgccca ctgtcccttt catgctctga tgccagcaga gcgagagata ttcattgccc
     3061 ggaaaaggct gctagaatac ttgggtttgc aactgcggct tgccgtcctc aacaaggaaa
     3121 gccggctgga cgttaaggcc ctgtacctga gcaagagagc agagctggct ccctgccaca
     3181 ggatgaagaa gagaagttcc agccccgcta aatccccatc catggagaag cagacccttc
     3241 ccttttacaa gttttgctac cagtgtggtc gctccatcgg ggtccgcctc tcaccctgtc
     3301 cccgctgcta tgggatcctg acctgtagca agtactgcaa gaccaaggcc tggattgagt
     3361 tccacaaaaa ggactgcaat gacatcatgg ctatgaagaa ggatctccta gcccaaaggt
     3421 cccaggagcc caagagtgaa aataacctgt ggcatatcaa ccaggcatcc cagactgtcc
     3481 agctcagaaa ggaggaggac caggaaaacc aggcatccaa gaatgcccag ttcgaaaagg
     3541 aggacaagga taaccaggag tccaagagtg tccagttcaa aaaggaggac caggataacc
     3601 aggcgtccaa gagtatccaa ttcaaagaga gcacagagca gaagaaccag gtgtccaaga
     3661 gtctccaact caaaaagaac aaggaacagg ataaccaggt gtccaagagt gtccagctca
     3721 aaagggaccc ggaacagaag gaggtgtccc taacgagatc ctgctggact gcctgacatg
     3781 gcgttccacc tgcagtcacc agtgagtacc tccatgctga cctctcccta cagggcagct
     3841 ctaccgagcc tctacctcac tccatggcta tctatcctgg ccaatcaagg agaaaggact
     3901 atacccctcc ctctcccagg gaaacatctg ggctacctgg caccagggat tcccaggact
     3961 tacaagaaag cagagaggcg aggatgccgc tgctaccctg ggcccaggag cctccctcct
     4021 gggagctgtg gcccagtagc acatggggtg gggtcctgtt ccttgtgctt atatagaccc
     4081 cactgaatgg caacactgca aaatgtattt gggtagcagt gtaggcccca agtctcagtt
     4141 aaagcagata taccatgtgg ctgagcaggg ggtttgagtc tgggctgagt gagcttccga
     4201 gcaatggagg caggcgctat actccttgag atgagggcaa actagccctg agtatcttaa
     4261 gttgcttaga acatttctgc agatggggga tagcttgaga cagactggtg tgtcaggaca
     4321 tccctgttcc ctccatggtt ccctcgggta cctctgaggc accctggaag gaatgagaac
     4381 ttttctatgg ctaagacaat gacatgtaca ttgaggtggg ctagagaggt ggaaggctgg
     4441 ttggctctgg tgtcctggcc ccctcctccc atgaactttg gcatgttcag ttagcacaga
     4501 cagacatctc cccaggcagg actcggagat gttcaatggt tgccaccact cggaagccct
     4561 gggactttgc tccaggtgca aacccatctt caaacccctt tcaacaagct ccaatctgtg
     4621 ctctgacgtg tacatgccat gctcacacgt acacgcaccg tcttaccagt ttacacaagc
     4681 gcatgtccgc tgtaggtctc cagcctttaa ttcatataag gactcaaaga acacacatta
     4741 cccactggca ccgagtgaca gggagcctca tggagaaagg acacagtagc ttggccacta
     4801 tcctggctgc cctgtacagc atgggtgccg ctgtcctgac acctaggcac tcgttgatgc
     4861 cagagcccag gtctggctcc cagtgcccct gcctgagtgt cactagcagg gatgtggctg
     4921 ggtgaatgtg ctcagggcat gggcctaaga aacccacaga ccaactacag agcacaccca
     4981 tcctggacca ggagacctga ctactgggca ggccttggtg ctgtgctggc gggagcctct
     5041 ctaacccagt gacaaaaaga aaggaaaaaa aaaaa
//
