LOCUS       NM_001134781            6332 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ankyrin repeat and IBR domain containing 1
            (Ankib1), mRNA.
ACCESSION   NM_001134781 XM_347227
VERSION     NM_001134781.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6332)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Sep 5, 2008 this sequence version replaced XM_347227.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.15424.1,
                                           SRR26643298.21685.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-230               JAXUCZ010000004.1  31288393-31288622
            231-503             JAXUCZ010000004.1  31324810-31325082
            504-804             JAXUCZ010000004.1  31328235-31328535
            805-987             JAXUCZ010000004.1  31340378-31340560
            988-1105            JAXUCZ010000004.1  31353475-31353592
            1106-1314           JAXUCZ010000004.1  31364849-31365057
            1315-1403           JAXUCZ010000004.1  31366293-31366381
            1404-1548           JAXUCZ010000004.1  31369555-31369699
            1549-1715           JAXUCZ010000004.1  31373194-31373360
            1716-1804           JAXUCZ010000004.1  31379274-31379362
            1805-1935           JAXUCZ010000004.1  31389267-31389397
            1936-2070           JAXUCZ010000004.1  31395185-31395319
            2071-2157           JAXUCZ010000004.1  31396568-31396654
            2158-2224           JAXUCZ010000004.1  31396884-31396950
            2225-2370           JAXUCZ010000004.1  31398554-31398699
            2371-2549           JAXUCZ010000004.1  31399609-31399787
            2550-2601           JAXUCZ010000004.1  31400595-31400646
            2602-2698           JAXUCZ010000004.1  31407651-31407747
            2699-2832           JAXUCZ010000004.1  31408596-31408729
            2833-6332           JAXUCZ010000004.1  31409001-31412500
FEATURES             Location/Qualifiers
     source          1..6332
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q13"
     gene            1..6332
                     /gene="Ankib1"
                     /note="ankyrin repeat and IBR domain containing 1"
                     /db_xref="GeneID:368062"
                     /db_xref="RGD:1597088"
     exon            1..230
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            231..503
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     CDS             316..3573
                     /gene="Ankib1"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="ankyrin repeat and IBR domain-containing protein
                     1"
                     /protein_id="NP_001128253.1"
                     /db_xref="GeneID:368062"
                     /db_xref="RGD:1597088"
                     /translation="MGNTTTKFRKALINGDENLACQIYENNPQLKESLDPNVSYGEPY
                     QHNTPLHYAARHGMNRILGTFLFGRDGNPNKRNVHNETSMHLLCMGPQIMISEGTLHP
                     RLARPVEDDFRRADCLQMILRWKGAKLDQGEYERAAIDAVDNKKNTPLHYAAASGMKA
                     CVELLVKHGGDLFAENENKDTPCDCAEKQHHKDLALSLESQMVFSRDPEAEEIEAEYA
                     ALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMS
                     NPENCCQRSGVQMPAPPPSGCNAWDTLPSPRTPRTTRSSVTSPDEISLSPGDLDTSLC
                     DICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHNIFCPAYECFQLVPVDV
                     IESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRLTKQGSNPSGSDTLSFP
                     LLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAA
                     NCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGGYYRC
                     TRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKTAK
                     EKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFE
                     LMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPD
                     APRRSFAGGTWDWEYLGFASPEYRRRHRQQRRRGDVHSLLSNPTDPDDPSEGTFDLPD
                     GGSGRRPGASVVSSASMSVLHSSSLRDYSPASRSANQDSLQALSSLDEDDPNILLAIQ
                     LSLQESGLAIDEETRDFLSNEASLGAIGTSLPSRLDSVPRSTDSPRAALSSSELLELG
                     DSLMRLGADSDPFSTDTLSSRPLSETRSDFCPSSSDLDSAGQDPSANDNLLGNIMAWF
                     HDMNPQSIALIPPAATTETSAEPPLPCVRDGSEGVRDTELVPPEDSVSKDAGVHEGER
                     TQVEENPLEENILAGEELSQADDSSNEAVSRGDGPDAASQTPQTSSDWLEQVHSV"
     exon            504..804
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..987
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1105
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1314
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1403
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1548
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1715
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1716..1804
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1805..1935
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2070
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2071..2157
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2158..2224
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2225..2370
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2371..2549
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2550..2601
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2602..2698
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2699..2832
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
     exon            2833..6332
                     /gene="Ankib1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggggcgccc gcccagtgtg agctcgccgg gcgcgtcggg ctcgcgcaac gcttcccgcg
       61 ggcctccagc gcgcatcctc tggctccggc agccgctggc ggcgggtggg tggggcgcgg
      121 agtggaccgg aggtcacccg ctcggcgcga gaggcaggtg gccgcggcag aggaagacct
      181 gcagatctgt ggaattcacg cgaccccggt ccccgccggg agaagtaacc aatgtgaaac
      241 atgttgtaga agtactccag aagtggctga aggaagaaag aaagtgccac tgcctatcag
      301 aaaataaaac aaaacatggg aaatacaacc accaaattcc gcaaagcact catcaatggt
      361 gatgaaaacc tggcttgcca aatctatgaa aataatcctc agctaaaaga atcccttgat
      421 ccaaatgtat cttatggaga gccctatcag cacaacactc cattacacta tgctgctaga
      481 catggaatga ataggatatt agggactttt ctttttggta gagatggaaa cccaaataaa
      541 cggaatgtgc acaatgaaac atctatgcat ttgttgtgta tgggacctca aatcatgata
      601 tctgaaggaa cccttcatcc tcgcttagca cggcctgtgg aagatgattt cagaagggca
      661 gattgtctgc agatgatctt acgatggaaa ggagcaaaac ttgaccaggg tgaatatgag
      721 agagcggcta ttgatgcagt tgataacaaa aagaacacac cccttcacta tgctgcagcc
      781 tcagggatga aagcctgtgt ggagctttta gtaaaacacg gaggagactt gtttgctgaa
      841 aatgaaaata aagatactcc ttgtgattgt gcggaaaagc aacaccacaa agacctggcc
      901 ctcagtctgg agtctcagat ggtgttctct cgggacccag aggctgaaga aatagaagct
      961 gagtatgctg cactggacaa gcgagagcca tatgaaggac taaggcccca ggatcttcgt
     1021 aggttaaaag atatgcttat tgtggagacc gcagacatgc tccaggcccc tctgtttact
     1081 gctgaggcac tgcttcgagc tcacgattgg gacagggaga agttgcttga agcatggatg
     1141 tccaacccgg agaactgctg ccagcggtca ggcgtgcaga tgccagctcc accacccagt
     1201 gggtgcaatg cctgggacac gctgccttcc ccgaggacgc caaggactac acggtcctct
     1261 gtcacctctc cagatgagat cagcctgtct cctggggatc tagataccag tctgtgcgac
     1321 atttgtatgt gcagtatttc cgtgtttgaa gatccagtgg atatgccctg tggacatgac
     1381 ttttgtagag gctgttggga gtcgttttta aatctgaaaa ttcaagaagg tgaagcccat
     1441 aacattttct gccctgccta tgaatgcttt caacttgtgc ctgtagatgt catagaaagt
     1501 gtagtttcta aggagatgga caaacgatac ctacagtttg atataaaggc ttttgttgaa
     1561 aataatcctg ccattaaatg gtgtcctacg gcaggctgtg aaagagcagt caggctgaca
     1621 aaacaggggt ccaatccatc tggctctgac acactcagct tcccactgct aagagcccct
     1681 gctgtggact gcggcaaagg acacctcttc tgctgggagt gccttggtga agcacatgag
     1741 ccttgtgact gccaaacatg gaaaaattgg ctgcaaaaga taactgaaat gaagccagag
     1801 gaactcgtcg gagtcagtga agcctatgag gatgctgcca actgtctgtg gctgttaact
     1861 aactccaagc cctgtgcgaa ctgtaagtca ccaatacaga agaatgaggg ctgcaatcac
     1921 atgcagtgtg ccaagtgcaa gtatgacttt tgctggattt gcttagaaga atggaaaaag
     1981 catagttctt ccacgggagg ctattacaga tgcacgcgct atgaggtcat ccagcatgta
     2041 gaggagcagt ccaaggagat gactgtggag gctgagaaaa aacataaacg gtttcaggaa
     2101 cttgacagat ttatgcacta ctatacaaga tataaaaacc atgagcatag ttatcagtta
     2161 gaacaacgtc ttcttaaaac agccaaagaa aagatggagc aattgagtag agctctcaaa
     2221 gaaactgaag gaggctgtcc agacaccact ttcatcgaag atgcagtaca cgttcttcta
     2281 aaaactcggc gcatcctcaa gtgttcttat ccatatggat ttttcttaga acctaaaagc
     2341 acaaagaaag aaatttttga actaatgcaa acagacctag aaatggtcac tgaagacctt
     2401 gcccaaaaag tcaataggcc ttatcttcgt acacctcgac acaagatcat cagggcggca
     2461 tgccttgttc agcagaagag gcaagagttc ttggcgtctg ttgctcgtgg agttgctcct
     2521 gcagactccc cagatgctcc caggcgcagc tttgccggtg gaacatggga ttgggaatat
     2581 ttaggatttg catcacctga gtatcggagg agacacagac agcagcgccg tcgaggggat
     2641 gtgcacagcc tgctcagtaa ccctacggac cccgatgacc caagcgaagg aactttcgat
     2701 ctaccagatg ggggcagcgg ccgcaggcct ggtgcatccg tggtaagctc tgcatctatg
     2761 agtgtgctgc acagctcttc cctgcgtgac tacagccctg ccagtcgctc tgcaaaccag
     2821 gactctcttc aggctctgag ctccctggat gaagatgatc ccaacatact ccttgccata
     2881 cagttgtcat tgcaagagtc tgggctggcc atcgatgaag aaaccagaga cttccttagt
     2941 aacgaagcat ccctgggagc cataggtaca tctttacctt cccggctgga ctctgtaccc
     3001 cggagcacag atagtcctcg ggctgcgctg agcagctccg agctgttgga gcttggtgac
     3061 agtcttatga ggctaggagc agacagtgac ccattttcaa cagacacttt gagttcacgc
     3121 cctctcagtg agacgagaag tgatttctgt ccctcttcca gtgaccttga ctcagctggc
     3181 caggacccca gtgccaatga caatcttctt ggcaatatta tggcttggtt tcatgacatg
     3241 aaccctcaga gtatcgccct cattcctcca gcagcaacca cagaaaccag tgctgagcct
     3301 ccgcttccct gtgtcagaga tgggtctgaa ggtgtgaggg acacggaact ggtgccacca
     3361 gaagactcag tgtccaaaga tgctggtgtt cacgaagggg aaagaaccca ggtggaagaa
     3421 aatcctctgg aagagaacat tctggctggg gaagagttgt ctcaagccga cgacagtagt
     3481 aacgaggcag tgagccgggg ggacgggcca gatgctgcca gtcaaacccc tcagacctca
     3541 agcgactggc tggagcaagt gcattcagta tgaactgcat acgtgctctc cgggtgaatc
     3601 acagtacagg gtctgggagg tggagtatgc tttagagaga ctttaatgca cttaatttga
     3661 actcggttat gaaccactga tgttgggatt gaatgcaaag gagttccctc agatgagagc
     3721 tgcagtgtcg agtttaacct tacagggaat ttctttcgtg tcttatcccc ctttttagtg
     3781 acaaaagaga gcaggagaaa acacaatgga ataaatgggt tgacgtccac attctgagag
     3841 aacgcagcgc tctgtctagc ctggagttgg ccgtacttgg gttgaccatt taaatcaaag
     3901 cttactcctt aatccttaga tggcttcctc ttttttatag aaatgaagag ttttcttcat
     3961 tatagaagtt gggccagaca gttgtgacca cctgtcctca gtgtgtgtct ctctcggggg
     4021 gccttctttc ctcctcttgt ccaagcagtg tgagctgagg tatctgtgct gcttttagtg
     4081 ctgcgtctac cacagtgtga gtggtttcct tttcacatga atcaaagatt ccttctcatg
     4141 tctcttcaca gtccaattgt gccaaactct tgacttgtgc gctgactgac aggacgggta
     4201 ggtgtgctcc agggcagtgt cagcgcttgg gagtaaaagg tgccactcgg taacagcgac
     4261 tgtccagaag ttaatgggct tgtgttgcca tggagactgc atttaaataa atgtagcctg
     4321 tagcttaagt aaactaaagc taatgctgct gttaaaacag tttattttaa tattaaaata
     4381 cagttgatta gcaacagcgg tgctgtattt aagagacact ttattggaag tgcaatcata
     4441 gttctttgtt ttcacagttt tacagtgcat tctaattact aacgggtgca attactttta
     4501 atggtgtttt ataacataga aaaactggag ttttcatgag ttacagtaaa tcccacagtt
     4561 attaaaaaat tcaatacaac atcctacgca acatgttacc gtgcctttgc ctaacctaaa
     4621 tggatagttg ccagttaagt aagtcagtaa ttcaaatctc aatgtctttt ctgaagtaac
     4681 tatgctatga attgcgaaga cctccatgaa accacccatg gccttgcctt tacagtaact
     4741 atgacaacta agtgttcagt tcgtttgcat agatagcaaa tgctactgtg tttgttctct
     4801 tgcgcaatac tcatctgcta tttgatcact gtttagtatc gaaaacttaa cctcctagtt
     4861 accagtgtcc tactgtgaag aaatactggt cttagttgta cttaagatac agtgtccagt
     4921 gtgtaactaa ctagagtaca ccgttggaat ggctcttgta cttacattac taaagctagc
     4981 ataacatgag caacataaat acaaggagca catcgtcccc agaaaccaaa atctctatac
     5041 taagtgtgta cagggaatcc taggccaagt aaaagatcgt cttcaatatt gatatccaca
     5101 attatcattt ctcattacct ctttttcaaa ctttgctttt gaaatattca tgtactttga
     5161 tttcctatgg ccaagaagac atggtacttg agtatttaat tggtaattgt tcatggatat
     5221 caagaatccc aatgtttttt tttctccagt tatcacaaca ttgatatgaa tccctgttaa
     5281 agttagtggg ggtaaatgct aactttgtct acagtgtatt actgtatatt aaactgaaat
     5341 agtccattaa aggatttttt tatttggatt aaaaatatga acaccataaa atctctagac
     5401 caggctgtaa attttccagt agaaagcgct tatatcccta gaggcgtctg gcacagccat
     5461 ggtgaggaga gtgggtacac ccagtggata ggagggtgga ttccggtggg gggagggtat
     5521 gtatggagag gagggctacc tgtggagatc catgtgtgct gggctcctgt tcccttacct
     5581 tgtgcagtgc ctgttaggac gtgctgggtt cctgaatgtg aaaaactgtg gctatccagt
     5641 ttgtatttcc ttggtacata ttttaaaaac aacacagtca ttgactttcc aattcagtaa
     5701 taaagtttgg caaagcctat tttgtaaaca agttaatttt ataatgtaaa aaagttaatc
     5761 taaccttgac ttgttatttg cactttcata gtctatactt gatacattcc cactttatat
     5821 acagtaggat tctacagacc tgtagatgtt tggccaaatg aatgctgtta ataatatgta
     5881 aaattctttg attaaacatt tattacttaa actatttcca ttttgtctca ttaaattata
     5941 gacttcattt aaagctaatt aggaagcaaa tcttgcttca tattaaatac cctccaatat
     6001 gacagtatta atttgattct attatgtaat taaatagtgc ctaatatttt tacagtagcc
     6061 atttgctgaa aattgtatac cccagaggta aatttgattt cactatgaca atgtattaaa
     6121 attatgaaat tcgataaatc tgatttcatt tgatgacagt gtattaaaat tgtgaattta
     6181 gtgctcattt tcattcctat agctttatga ggaaaatgtt atgatttcct tggaatctag
     6241 cagagaaaaa gtcatagaac ttgaggatct gtcttgtgaa attgagagga agaagtgtat
     6301 gccatgtgaa taaagtgtcg tgcttctcac ca
//
