LOCUS       NM_001393870            2944 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ankyrin repeat and EF-hand domain containing 1
            (Ankef1), transcript variant 1, mRNA.
ACCESSION   NM_001393870 XM_039104592
VERSION     NM_001393870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Mar 19, 2021 this sequence version replaced XM_039104592.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.19100.1,
                                           SRR26360181.1597240.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-258               JAXUCZ010000003.1  144300534-144300791
            259-428             JAXUCZ010000003.1  144301966-144302135
            429-820             JAXUCZ010000003.1  144304162-144304553
            821-1020            JAXUCZ010000003.1  144310810-144311009
            1021-1170           JAXUCZ010000003.1  144312064-144312213
            1171-1294           JAXUCZ010000003.1  144313165-144313288
            1295-2117           JAXUCZ010000003.1  144316705-144317527
            2118-2344           JAXUCZ010000003.1  144319136-144319362
            2345-2505           JAXUCZ010000003.1  144327374-144327534
            2506-2643           JAXUCZ010000003.1  144328410-144328547
            2644-2944           JAXUCZ010000003.1  144329551-144329851
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2944
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /note="ankyrin repeat and EF-hand domain containing 1"
                     /db_xref="GeneID:296184"
                     /db_xref="RGD:1304809"
     exon            1..258
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            259..428
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            429..820
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             475..2802
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /note="ankyrin repeat domain-containing protein 5; ankyrin
                     repeat domain 5"
                     /codon_start=1
                     /product="ankyrin repeat and EF-hand domain-containing
                     protein 1"
                     /protein_id="NP_001380799.1"
                     /db_xref="GeneID:296184"
                     /db_xref="RGD:1304809"
                     /translation="MALADKRLENLQIYRVLQCVRNKDKKQIEKLTKLGYPELINFTE
                     PIDGLSALHLASVSNDIDMVSFLLGLGAHPDVQDHMGCTPTMRAAELGHELSMEILAK
                     AKADMTIVDNEGKGVLFYCILPTKRHFRCSQIALEHGADVNNITYEGKPVFLRACEEA
                     HDVKDMCLTFLEKGANPNAINTSTGRTALMESSREGVLELVRGILERGGEVNTFDNDR
                     HNAAHFAAKGGFFDILKLLFAYSGEMGLIGMDGNTPLHFAAMGGFADCCKYIAQRGCD
                     LKWKNLEHKTPRMVAKDGGFKAASKEIRRAERTAAKLAKPGVKNPNPLWALRLHDWSI
                     EHESSLREAFSFVDRGDGVVSKDDFVLALEERQEFATPEQLLSVAQMHEKSRGGGVNI
                     NDFFKGTKYLSKSFVLGSFGPKKKKKGLGKKPRKGKFVLPLPICTIPENAFPRRPDGG
                     PPYYMVETYQNVTDTNRFNRDHPPEHPIQDDSEWYIDDPNRVFANINFITKAGDLASL
                     KKAFEAGIPVDMKDNTYKTPLMTACASGNIDVVKFLLERGANVNATDNFLWTPLHFAC
                     HAGQQDIVELLVQSGAVIDASSINNSTPLSRAIESCRLDTVKYLLDNGAKFQTENRKG
                     HAAMDIAKAYADYRIIDMIKEKLDELPKPTDNQKMKSKLPKLKTEGTDVKKEEGTLSS
                     IYTVPAITEEKKIHRDNVVYLNSLITSGFTKKVDITFIPKRIWSPEATTAQLIRKREL
                     RRERFTYEVDFEDFMMPFQKNITEKAQALESMLKN"
     exon            821..1020
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1170
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1294
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..2117
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            2118..2344
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            2345..2505
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            2506..2643
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
     exon            2644..2944
                     /gene="Ankef1"
                     /gene_synonym="Ankrd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggtgaag ctcacagtgg gcgcagcctg acaggctgca cttcgcccct tatggtcacc
       61 cttttgcacg ctggcacaca cacacactcc ttcgctgttg gccacacgcg caggctggcc
      121 tgcttggcca gaagggtgat tcactggggc ctaaggccaa tcccaggcga cagagatcag
      181 aagccaggaa gccctcacaa gaccagggac acaagtgctc agagagatct agctcctgat
      241 tccctctagg actaaaagct gccctgtaac tgcttaagac ctacagccca cctcagccct
      301 gattcagaca tctcccctga cgtctctaaa ttggatatca gcttgattgt cctagcagca
      361 tgccgaaggg ctgtgtactc tgcctgacca ctgtggagcc taccatgagc agcccatttc
      421 agatgcagtt ttcgtcttag tctagaaagc gttttaaaga agtaaacatc aaacatggct
      481 ttagcagaca agagacttga gaacttacag atctacagag ttcttcagtg tgttcgcaac
      541 aaagacaaga agcagataga gaagctgacc aagcttggat accctgagct catcaacttc
      601 actgaaccca ttgatggact gagtgctctc cacttagcct ccgtctccaa tgatattgac
      661 atggttagct ttctccttgg acttggtgct catcctgatg tgcaagacca catgggctgt
      721 accccgacca tgagagctgc ggagctgggc catgaactgt caatggaaat cttagccaaa
      781 gccaaagctg atatgacaat agttgataat gaaggaaaag gtgtgttgtt ttattgcatc
      841 ttgcccacga agcggcactt tcgatgttca cagattgcct tggaacacgg tgcagatgtc
      901 aacaatatca cctacgaagg gaagccagtg ttcctcagag cttgcgagga agcacacgat
      961 gtgaaggaca tgtgcctgac atttttggag aaaggagcca atcctaatgc tatcaacaca
     1021 tccacagggc gcacggcttt gatggagtca tcaagagaag gggttctgga actagttcga
     1081 ggcatattgg agagaggagg tgaagtgaat acattcgaca acgatagaca caacgctgct
     1141 cattttgctg ccaaaggagg cttttttgat atactgaagc tcctcttcgc atacagtgga
     1201 gaaatggggt taataggaat ggacgggaac acaccacttc attttgctgc tatgggtggc
     1261 tttgcagatt gctgtaaata tatagctcag cgaggatgtg acttgaaatg gaaaaatttg
     1321 gaacataaaa caccccgaat ggtggcgaaa gatggaggct tcaaagctgc tagcaaggaa
     1381 attcgtcgag cagagcggac tgcagctaaa ctcgctaagc caggagtaaa aaatcctaac
     1441 ccactctggg ccctcaggct gcacgactgg tccatagagc acgagtcttc ccttcgggag
     1501 gcctttagct tcgtggacag gggcgatggg gtggtcagca aagatgactt cgtgctggcc
     1561 ctggaggaga ggcaagagtt tgccacccca gagcagttgc tttctgttgc tcaaatgcac
     1621 gaaaaaagcc gaggaggtgg ggtgaacatt aacgacttct ttaagggaac caaatactta
     1681 agcaagtctt ttgtcttggg atcttttggg cctaagaaaa agaaaaaagg gttgggcaaa
     1741 aagccaagga aaggcaagtt tgttttgcct ctccccattt gtaccatccc tgagaatgcc
     1801 tttccgaggc ggccagatgg gggcccacct tactacatgg ttgagaccta ccagaatgtc
     1861 accgacacca acaggttcaa ccgggaccac ccgcctgagc accccatcca ggacgattcc
     1921 gaatggtaca tcgatgatcc gaatagggtc tttgcaaata ttaattttat caccaaagca
     1981 ggagacctgg cctctctgaa aaaggccttc gaagcaggaa tacctgtgga tatgaaggac
     2041 aacacttaca agactcccct catgacagcg tgtgccagcg gcaacattga tgtggtcaag
     2101 tttcttctcg aaaggggggc aaatgttaat gcaacagaca atttcctgtg gactccactt
     2161 cattttgcgt gccatgctgg ccagcaagac attgtcgagc ttcttgttca atctggagct
     2221 gtaatagatg cctcatcaat caacaactcc actccgctaa gcagagccat tgagagctgt
     2281 agactggaca ctgtaaaata cctacttgat aatggcgcca aattccagac ggaaaacaga
     2341 aaaggacatg ctgccatgga tattgcaaag gcatatgctg attatagaat aattgatatg
     2401 ataaaagaaa aactagatga actgcccaaa ccaacagata atcaaaaaat gaaaagcaag
     2461 cttcctaaac tgaagacaga aggcacagat gttaagaaag aagagggaac actgtcatcc
     2521 atttacactg tgccagcaat aacagaggag aagaaaatac acagggataa tgtggtttac
     2581 ctcaattctc tgattaccag tggcttcact aagaaagtgg atatcacatt tatccctaaa
     2641 aggatttgga gtcctgaagc cacaacagca cagctgatca ggaagaggga actccggaga
     2701 gagaggttca catatgaggt ggactttgaa gacttcatga tgcctttcca aaagaacatc
     2761 acagagaaag ctcaggcact ggaatcaatg ctcaagaatt aagtcagtac agtagcctcc
     2821 tgggagaagt gctctgtggc ctcagagttt ggagaaagta cgtatttcca tcaaagccaa
     2881 agcaactcat gcattaagaa tttgttatta aagaccagtt cttgctgcaa cagctataac
     2941 aata
//
