LOCUS       XM_039084558            5093 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin and armadillo repeat
            containing (Ankar), transcript variant X2, mRNA.
ACCESSION   XM_039084558
VERSION     XM_039084558.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084558.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5093
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5093
                     /gene="Ankar"
                     /note="ankyrin and armadillo repeat containing; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:501138"
                     /db_xref="RGD:1561071"
     CDS             735..5072
                     /gene="Ankar"
                     /codon_start=1
                     /product="ankyrin and armadillo repeat-containing protein
                     isoform X1"
                     /protein_id="XP_038940486.1"
                     /db_xref="GeneID:501138"
                     /db_xref="RGD:1561071"
                     /translation="MLRIVKKGIVRFDQGQDEETFLENLAVQRNASAFFEKYERSEVQ
                     ELLTTALVSWLAAKDDVRSQLDIPCGLMSQINNVGFSTAVLLTPVDPTTQLDYREVHQ
                     ILRELAIGIYCLNQIPSISLEANFDQSSSCQLPPAYYDTRVGQILIHIDYMLKALWHG
                     IYMPREKRARFSELWRTIMDIDQDGKPQTTKNIYSEFSSAGLVDITNDPDFEGIYDED
                     MNEDPTYEPNSPEEKAMFMKYAEGMMMKLTFSTTHIQQHENIFIFETAYWLTNAIKYN
                     QDYLDICTYQRLQQRLSLQKKVIQKHFEKKKEIRRGIGYLKLICFLIPFLLSLKKKMK
                     VPYLNSLLPPFSDDKVKTERELPPFMYGRNFKCQNFDYKEHQYFHVHGGIEFDISTSP
                     VENALDDFKNNAKKIWACAANTFTEDSGYKEFYSVPVMEFYGKSYYVIYFELEIFYQQ
                     LYKTQWWGAINEIVNNLRLKRLPLTEAQLHEQFKKKFGLKKAMKCKSIPFGLKSAVER
                     GLSAVFHTFSRKTSSSTINVSDEAGYAIFHHAALHNRVPIICQLCNANFNVNQRRFIM
                     FTQESSKMDMKKERNGPTPLHLAAQACSLEATICLLCFKADYTLTEKRGWMPIHFAAF
                     YDNICIIIALCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYLFSLGANWRKTDT
                     KGNNIIHLSVLTFHTEVLKYIIELHIPELPVWKTLVEMLQCESFKRRMMAVMSLEVIC
                     LANDEYWQNILDAGTIPALVNLLKCPKIKLQCKIVGLLSNISIHVSVVHALVEAGGIP
                     ALISLLASDEPELHSRCAVILYDIAKCENKDVIAKYNGIPALINLLSLNKENVLVNVM
                     NCIRVLCMGNEGNQKAMRDYNGIHYLIQFLSSDSDVLKAVSSATIAEVGRDNKQVQDA
                     IAMEGAIPPLVALFKGKQLSVQVKGAMAVESLANRNPSIQKAFLERKLTKDLLKLLKA
                     FQIDVKEQGAIALWALAGQTLKQQKYMAEQIGYNFIINMLLSPSAKMQYVGGEAVIAL
                     SKDSRKHQYQICEGNGIAPLIRLLRISKIAEGTLLSVIRAVGSICIGVAHTSNPMSQQ
                     CVVEENAFPVLIQLLRSHPSINIKVEVAFSLACIVLGNDSLQKELQENEGFEYSDVLY
                     LLHSKDKEICLRAGYALTLFAFNNRFQQYLILETGMITLSIFEPFLQSRVETERAMAA
                     FQIIVLAKVIIDMDHITLSARGVTILADSLYSAHTPTLALTGNLIASLAHTRSGIPDA
                     FLTLGTVQRLFYHLYSEREEVRAACSCALGYLSYNARAFRILLTECRNKPNQFLRIKH
                     NISRDARINPAFLKEFQMQQDVGLPSLSLEKNGGPSVIPIFKKGKEHRRKARPKIQPR
                     DSLTLIPPATNFMGLFRTTHKTNVSHNIFSFSSGISSDIINVSRPRIVFLKNLGKGEQ
                     NANPEPAES"
ORIGIN      
        1 cactggcccg tgacgctcca gggtttctgt tgtttccttt ataagcaact gcccggtagc
       61 ggttgcggag acagtatggg gctgagctga aatctagaga gattagaggg tttgtcctca
      121 ggggaacaac cactaggctg tgtgccatcc gccaactagt acagaggtcg ccccagctgc
      181 agacgcctca cattcttggc ctaaggcaca gcctgtatgt gggaggcctt aggacagctt
      241 tagctggctc aggggtttcc caggagttcg taccagcttt agccttcagc acaggtaagg
      301 ccctcacagc ttccctgagc atctcgagct ttggagttct ggtggggcga ttcaggaccc
      361 tcaagaagcc attccaagca acggctgcct gttccagaga ctaccttgac caccgtcgaa
      421 gcaactctcc tagacaaaat catttccaag taggcctctc tcttttcctt gtctcttccc
      481 atgaccatgg cagttgctgg tgattatgat cacaagtctt ggagcagggt tctggttctc
      541 aaaactttga acccccatca tgacttagga tctcctacgt ttacatgttg gcgtctatga
      601 agtagtagaa aaatgccggg cgagctggat tctatacaca gtgtcagcat tgcctgcaaa
      661 gtacaatttc tctgccctac ccatgtgatc cagaaacaga aacttcaaaa agaacaagct
      721 agatttaatt ggaaatgtta agaatagtaa aaaaaggaat agttagattt gatcaaggac
      781 aagatgaaga aaccttcctg gaaaacttag cagtgcaacg aaatgcctct gctttttttg
      841 aaaaatatga acgaagtgaa gtgcaagaat tattaacaac agcactagtc agctggctgg
      901 ctgccaagga tgatgttcgt tctcaactag acatcccgtg tggactcatg agtcaaataa
      961 ataatgtagg cttctccact gccgtcctat tgactcctgt ggaccctact acccagttag
     1021 actacaggga agtccatcag atcttaaggg agttggccat tggaatttat tgcttaaatc
     1081 aaattccttc aatcagttta gaagccaatt ttgatcagag ttcttcttgt caattacctc
     1141 cagcttatta tgataccaga gttggacaaa ttttgatcca tattgactat atgctaaaag
     1201 cactgtggca tggaatatac atgcccagag agaaacgagc caggttctct gaattgtggc
     1261 gcacaatcat ggacattgat caagatggga agcctcaaac aactaaaaac atatattctg
     1321 agtttagttc agcaggtttg gttgatatta caaatgaccc agactttgag gggatctatg
     1381 atgaagacat gaatgaagat ccaacatatg aacccaatag ccctgaagaa aaggctatgt
     1441 tcatgaaata tgctgagggt atgatgatga agctgacgtt cagtaccaca catattcagc
     1501 agcatgaaaa catctttata tttgagacag cctattggct tactaatgct ataaagtaca
     1561 accaggatta ccttgacatt tgtacttacc agaggctaca acaaagactc tctcttcaaa
     1621 aaaaagttat tcaaaagcac ttcgagaaaa aaaaagaaat cagaagaggg ataggctatc
     1681 tgaagttaat atgtttcctg attccatttt tactcagttt aaaaaagaag atgaaagttc
     1741 catatttaaa tagtctactt ccaccctttt cagacgacaa ggtcaagacg gagagagagc
     1801 tgcctccatt tatgtacgga cggaacttta agtgccagaa cttcgattac aaggaacatc
     1861 agtacttcca tgtgcacgga gggattgaat ttgacatcag cacgagccca gtagagaacg
     1921 ctctggacga ctttaagaac aacgccaaaa aaatatgggc atgtgctgct aataccttta
     1981 cagaggattc aggatacaaa gaattttact cagtaccagt catggagttt tatggaaaga
     2041 gctactatgt gatctatttt gaacttgaaa ttttctacca gcaactctat aagactcaat
     2101 ggtggggagc cataaacgaa attgtgaata atctgagatt gaaaaggctt ccactgactg
     2161 aagctcaact acacgagcaa tttaagaaaa aatttggttt aaaaaaagct atgaaatgca
     2221 agagtatccc atttggtctg aagtctgctg ttgaaagagg cttgtctgct gttttccaca
     2281 catttagccg taaaacctca agctccacaa tcaatgtttc tgatgaagca ggctacgcca
     2341 ttttccacca tgctgccctg cacaatcggg tccctatcat atgtcagctg tgtaacgcca
     2401 acttcaacgt caaccagaga cgcttcatca tgttcaccca agagtcatcc aaaatggata
     2461 tgaaaaaaga aagaaacggt ccaacacctc tacacctggc tgcacaagct tgttcactgg
     2521 aagcaaccat ctgtctactt tgtttcaaag ctgattacac acttactgag aaaagaggct
     2581 ggatgccaat acacttcgcc gccttctatg ataacatctg catcatcatc gcactctgta
     2641 ggaaggatcc gagtttgcta gaggctgagg caacagctga gaatcagtgt actccactgt
     2701 tacttgctgc cacttcggga gccctagaca cgatccaata cctgttttct cttggtgcaa
     2761 actggagaaa aacagacaca aaggggaaca acatcatcca tctgtcagtg cttacttttc
     2821 atacagaggt actcaagtac ataatagagc tgcatatccc tgagcttccg gtttggaaaa
     2881 ctctggtgga aatgttgcag tgtgaaagct tcaaacgaag gatgatggct gtcatgtcct
     2941 tagaagtaat ttgcttagca aatgatgaat actggcaaaa tattttggat gcaggcacca
     3001 ttcctgcctt agtcaatcta ttaaaatgtc ccaaaataaa gctgcagtgt aaaattgttg
     3061 ggttgctgag caatatctca attcacgtaa gtgtagtgca tgctttggtg gaggcaggag
     3121 gcattcctgc tttgatcagc ctgctggctt ctgatgaacc ggaactccat tctcgctgcg
     3181 ctgttattct atatgatatt gctaagtgtg aaaacaagga tgttattgcc aaatataatg
     3241 gaattccagc tctgataaat ctcttaagcc ttaacaaaga aaatgtgctg gtgaatgtaa
     3301 tgaactgtat ccgggtgctt tgtatgggaa atgaaggcaa ccaaaaagca atgagagact
     3361 ataacggcat ccactacctt atccagtttc tgagttctga ttctgatgtg ctgaaggcag
     3421 tgtcctcagc tacaatcgct gaggttggcc gggacaataa gcaggtgcag gatgctatag
     3481 caatggaagg ggctatccct cccctggtag ctctttttaa agggaagcag ctcagtgtcc
     3541 aagtaaaagg tgccatggct gtggagtcac tggcaaatcg caatccttca atccagaagg
     3601 catttctgga aagaaaatta actaaggacc tcctaaaact tctaaaggcc tttcaaatag
     3661 atgttaagga gcaaggagcc atagcacttt gggccttggc aggacaaaca ctgaaacaac
     3721 agaagtatat ggcagagcag attggataca acttcataat aaacatgctt ttgtcgccat
     3781 cagctaagat gcagtatgta ggaggtgaag cagtcatagc tctaagtaag gacagtagga
     3841 agcaccagta tcaaatatgt gaagggaacg gcattgcacc actgattcgc ctgctgagga
     3901 ttagtaagat agcagaaggc acactcctga gcgtcatcag agcagtgggc tccatttgta
     3961 tcggtgtggc gcacacgagc aatcccatga gtcaacaatg tgttgtagag gagaatgcct
     4021 ttccagtgct tattcagcta ctaagaagtc acccttcaat taacattaag gttgaagtgg
     4081 ccttttcgtt ggcatgcatt gtcctaggga atgattcgct acagaaagaa ttacaagaaa
     4141 atgagggatt tgaatattct gatgtccttt atcttcttca ctcaaaagat aaggaaatct
     4201 gcttgagagc aggttacgca ctcacccttt ttgccttcaa taatcgtttt caacagtact
     4261 taatattgga aactggaatg ataaccttat ctatttttga gccttttctt caatccagag
     4321 ttgaaacaga gagggcaatg gcagcatttc agattatcgt attagctaaa gtcattatag
     4381 acatggatca tattactttg tctgcaagag gtgttactat tttagctgac agcctgtatt
     4441 cagcccacac tcctactctt gccctgacag gtaatctaat agctagcctg gctcatacaa
     4501 gatcggggat cccagatgct tttctcacac tggggaccgt ccagcggctc ttctaccatc
     4561 tgtactcaga gagagaagag gttcgagcag catgttcctg tgcccttggc tacctcagtt
     4621 acaatgcacg tgctttccgc atcctgctaa cggagtgcag gaataagcct aaccaatttc
     4681 tgcgcataaa acataacatc agtagggacg ccaggatcaa ccctgccttc ctaaaggagt
     4741 ttcaaatgca gcaggacgtg ggacttcctt ctttaagcct ggagaagaat ggaggaccat
     4801 ctgtaattcc tatctttaaa aaagggaaag agcaccgaag aaaagcaaga cctaaaatcc
     4861 agccaagaga ttctctgact ttaataccac ctgcaactaa cttcatgggg ctcttcagaa
     4921 caacacacaa gaccaatgtt tcccacaaca ttttttcatt ttcatctgga atttcatcag
     4981 atatcataaa tgtatcaaga ccaagaatag tgtttttgaa aaaccttggg aaaggtgaac
     5041 agaatgccaa cccagagcct gcagaaagct aataattaaa agcaaaaggc att
//
