LOCUS       XM_039098842            7464 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin 3 (Ank3), transcript variant
            X9, mRNA.
ACCESSION   XM_039098842
VERSION     XM_039098842.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098842.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7464
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7464
                     /gene="Ank3"
                     /gene_synonym="ANK-3"
                     /note="ankyrin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 67 ESTs, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 29 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361833"
                     /db_xref="RGD:620157"
     CDS             1..5880
                     /gene="Ank3"
                     /gene_synonym="ANK-3"
                     /codon_start=1
                     /product="ankyrin-3 isoform X8"
                     /protein_id="XP_038954770.1"
                     /db_xref="GeneID:361833"
                     /db_xref="RGD:620157"
                     /translation="MAHAASQLKKNRDLEINAEEETEKKKKHRKRSRDRKKKSDANAS
                     YLRAARAGHLEKALDYIKNGVDVNICNQNGLNALHLASKEGHVEVVSELLQREANVDA
                     ATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVRFLL
                     DNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAA
                     ALLLQNDTNADIESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVAS
                     KRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNG
                     LSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKAN
                     PNAKALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVS
                     QLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISAR
                     LGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGF
                     TPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASP
                     HAAAKNGYTPLHIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSL
                     LLSRNANVNLSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHY
                     GNIKIVNFLLQHSAKVNAKTKNGYTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNT
                     ALAIARRLGYISVVDTLKVVTEEIMTTTTITEKHKMNVPETMNEVLDMSDDEVGKASA
                     PEKLSDGEYISDGEEGEDAITGDTDKYLGPQDLKELGDDSLPAEGYVGFSLGARSASL
                     RSFSSDRSYTLNRSSYARDSMMIEELLVPSKEQHLPFTREFDSDSLRHYSWAADTLDN
                     VNLVSSPVHSGFLVSFMVDARGGSMRGSRHHGMRIIIPPRKCTAPTRITCRLVKRHKL
                     ANPPPMVEGEGLASRLVEMGPAGAQFLGPVIVEIPHFGSMRGKERELIVLRSENGETW
                     KEHQFDSKNEDLSELLNGMDEELDSPEELGTKRICRIITKDFPQYFAVVSRIKQESNQ
                     IGPEGGILSSTTVPLVQASFPEGALTKRIRVGLQAQPVPEETVKKILGNKATFSPIVT
                     VEPRRRKFHKPITMTIPVPPPSGEGVSNGYKGDTTPSLRLLCSITGGTSPAQWEDITG
                     TTPLTFIKDCVSFTTNVSARFWLADCHQVLETVGLASQLYRELICVPYMAKFVVFAKT
                     NDPVESSLRCFCMTDDRVDKTLEQQENFEEVARSKDIEVLEGKPIYVDCYGNLAPLTK
                     GGQQLVFNFYSFKENRLPFSIKVRDTSQEPCGRLSFLKEPKTTKGLPQTAVCNLNITL
                     PAHKKAEKADRRQSFTSLALRKRYSYLTEPSMSPQSPCERTDIRMAIVADHLGLSWTE
                     LARELNFSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNATTDALTSVLTKINRID
                     IVTLLEGPIFDYGNISGTRSFADENNVFHDPVDGHPSFQVELETPMGLYCTPPTPFQQ
                     DDHFSDNSSIESPFRTPSRLSDGLMPSQGSIEHPAGGPPVVTAEDTSLEDSKMDDSVT
                     VTETADPLDVDESQLKDLCQSECAHCWASVPGVPSGGPQAEPLRAQTRKVGVSSEQQE
                     KGDSGPEEEMADDKVRSLFEDIQLEEVEAEEMTEDEGQAILNRVPRAELAMSSLAGWQ
                     NETPSGSLESPAQARRITGGLLDRLDDSSDQVRDPITSYLTGEAGKFEANGNHAEVIP
                     EAKAKAYFPESQNDIGKQSIKENLKPKTHGCGRAEEPVSPLTAYQKSLEETSKLVIED
                     APKPCVPVGMKKMTRTPADGKARLNLQEEEGSARSEPKQGEGYKVKTKKEIRNVEKKA
                     H"
ORIGIN      
        1 atggctcatg ccgcctccca gttaaagaaa aacagggatt tagaaatcaa tgcggaagaa
       61 gagaccgaga aaaaaaagaa gcaccgtaaa cggtcccggg atcgcaagaa aaagtcggat
      121 gccaatgcaa gttacttgag agcagctcgg gcggggcacc tggaaaaggc ccttgactac
      181 atcaaaaatg gagtggacgt caacatctgt aaccagaatg ggttgaatgc gctccatctt
      241 gcttccaaag aaggccatgt ggaagtggtc tccgagctgc tgcagagaga agccaacgtc
      301 gatgcagcca caaagaaagg aaacacagcc ttacacatcg catccttggc tggacaagcg
      361 gaagtggtca aggtcttggt tacgaacgga gcgaacgtca acgcacagtc tcagaatggc
      421 ttcacgccgc tgtatatggc ggcccaggag aaccacctgg aagtcgtcag gtttcttctg
      481 gacaatggtg ccagccaaag cctggctaca gaggatggct tcacgccatt ggccgtggct
      541 cttcaacaag gtcacgacca agtcgtatcc ctcctgctcg agaacgacac gaagggaaaa
      601 gtgcgcctcc cagccctcca catcgcggcc cggaaagatg acaccaaagc ggcagctctg
      661 ctcctacaga acgacaccaa tgcagacata gagtcaaaga gtggcttcac cccactccac
      721 atagctgccc actacgggaa tatcaatgtg gccacgttgc tgttaaaccg agcggctgcc
      781 gtggacttca ccgcacggaa tgacatcact cctttgcatg ttgcctcgaa acggggaaac
      841 gcaaatatgg taaagctgtt gctcgaccgg ggtgcgaaga tcgacgccaa gaccagggac
      901 ggtctgaccc cgctgcactg cggggcgaga agtggccacg agcaggtggt agagatgttg
      961 ctggacagag ccgcccccat cctttcgaaa accaagaatg gactgtcccc actgcacatg
     1021 gccacacaag gagaccattt aaactgcgtc caactcctcc tccagcacaa cgtgcccgtg
     1081 gatgacgtca ccaacgacta cctgaccgcc ctccacgtgg cggcccactg cggccattac
     1141 aaagttgcca aggttctttt ggataagaaa gctaacccca atgccaaagc tctgaatggc
     1201 ttcacccctc tccatatcgc ctgcaaaaag aaccgaatcc gagtaatgga actccttttg
     1261 aagcacggtg catctattca agccgtaacc gagtcgggcc ttaccccaat ccatgtcgct
     1321 gccttcatgg gacatgtaaa tatcgtgtca cagctaatgc atcatggagc ctccccaaac
     1381 accaccaacg tgagaggaga aacagcattg catatggcgg ctcggtcggg gcaagcagaa
     1441 gtggtgcggt atttggtaca agatggagct caggtagaag caaaagctaa ggatgaccag
     1501 accccactcc acatttcagc ccgactcggg aaggctgaca tagtgcaaca actgttacag
     1561 caaggagcgt ccccgaatgc agcaacaact tccgggtaca ccccccttca cctttcggcc
     1621 agagaggggc atgaggatgt agctgccttc cttctggacc atggagcatc tttatccata
     1681 acaacaaaga agggattcac gcctctgcac gtggctgcaa aatatgggaa gcttgaagtg
     1741 gcaagtctcc tgctgcagaa gagtgcgtct cctgatgccg ctgggaagag cgggctaact
     1801 ccactgcatg tagcagcaca ttacgataat cagaaagtgg cccttctgct tttggaccag
     1861 ggagcctcac cccacgcagc tgcaaagaac ggttatacgc cactgcacat cgccgccaag
     1921 aagaaccaga tggacatagc cacgtccctg ctggagtacg gagctgatgc aaacgccgtt
     1981 acccggcaag ggattgcgtc cgtccacctt gcagcgcagg aagggcacgt ggacatggtg
     2041 tcgctgctcc tcagtagaaa tgcgaacgtc aacttgagca ataagagcgg cctcacccca
     2101 ctccacctgg cggctcaaga agaccgagtg aacgtggctg aggtccttgt caaccaaggg
     2161 gcccacgtgg atgcacagac aaagatgggc tacacgccgc tccatgtggg ctgtcactat
     2221 ggaaacatca aaatagtcaa ttttctgctg cagcattctg cgaaagttaa tgccaagaca
     2281 aagaatggat acacgccact gcaccaggca gcccagcagg gccacacaca catcatcaac
     2341 gtcctgctcc agaacaacgc ttcccccaat gaactcactg tgaatgggaa cacagccctg
     2401 gccatcgccc gacgccttgg ctacatctcg gtggttgaca ccctaaaggt cgtgacagag
     2461 gaaattatga ccaccactac catcacggag aagcacaaaa tgaatgtccc agaaacgatg
     2521 aatgaagtcc tcgacatgtc agacgatgaa gttggtaaag ccagcgcccc cgaaaagctc
     2581 agtgatgggg aatatatctc agatggtgaa gaaggtgaag atgccatcac aggggacact
     2641 gacaagtatc tcgggccaca ggacctcaag gagctgggcg atgactccct gcctgccgag
     2701 ggctatgtgg gcttcagtct cggagcccgt tctgccagcc ttcgctcctt cagttcggat
     2761 aggtcctaca ccctgaacag aagctcctat gcgcgggaca gcatgatgat cgaggagctt
     2821 ctggtgccat ccaaagagca gcaccttcca ttcacgaggg agtttgactc cgactccctc
     2881 agacactaca gttgggcagc agacacactg gacaatgtga acctggtctc cagccctgtg
     2941 cattctgggt ttctggttag ctttatggtg gacgcgagag ggggctccat gcgaggaagc
     3001 cgccaccacg ggatgcggat catcatccct ccgcgcaagt gtacggcccc cacccgcatc
     3061 acttgccgcc tggtaaagag acataaactg gccaacccac cccccatggt ggaaggagag
     3121 ggattagcca gtaggctggt agaaatgggt cctgcggggg cacaattttt aggcccggtc
     3181 atagtggaaa tccctcattt tgggtccatg agaggaaagg agagggaact cattgtcctc
     3241 cggagcgaga acggagagac ctggaaggaa caccagtttg acagcaaaaa cgaagacctc
     3301 tcggagctcc tcaatggcat ggacgaagaa cttgacagcc cagaagagtt gggcacaaag
     3361 cgcatctgca gaatcatcac gaaggatttc ccccagtatt tcgctgtggt ttcccggatt
     3421 aagcaggaaa gcaaccagat tggtcccgaa ggtgggattc tgagcagcac cacggtcccc
     3481 ctcgtccagg cgtctttccc agagggtgcc ttaaccaaaa ggatccgtgt gggtctgcag
     3541 gctcagcccg taccagagga gactgtgaaa aagatccttg gaaacaaagc aacgtttagc
     3601 ccaattgtca cggtggagcc gaggaggagg aaattccata agccgatcac catgaccatc
     3661 ccggtgcccc caccctcggg agaaggcgtg tccaatgggt acaaggggga caccacgccc
     3721 agcctgcgac tcctctgcag cattacagga gggacctcgc cggctcagtg ggaagacatc
     3781 acaggcacaa ccccgctgac cttcataaag gactgtgtgt ctttcacaac caatgtttca
     3841 gccaggttct ggctggcgga ctgccatcag gtgttagaaa ccgtagggct agcctcgcag
     3901 ctgtacagag agttgatatg tgtcccctac atggccaagt ttgttgtttt tgccaaaaca
     3961 aacgacccag tggaatcctc cctaaggtgc ttctgtatga cagacgacag agtggacaaa
     4021 accctggagc agcaggagaa tttcgaggag gttgccagaa gcaaagacat cgaggttctg
     4081 gaaggaaagc ccatctatgt tgattgctat ggaaacctgg ctcctctgac caaaggaggg
     4141 cagcagcttg tttttaactt ctattctttc aaagaaaaca gactgccatt ttccatcaag
     4201 gttagagaca ccagccaaga gccctgcggc cgtctgtctt tcctgaagga gccgaaaaca
     4261 acaaaaggat taccccaaac ggctgtttgc aacttaaata ttactctacc ggcgcataaa
     4321 aaggctgaga aggcagacag acgccagagc ttcacatccc tagccttacg taagcgctac
     4381 agctacttga ctgagcccag catgagtcca cagagtcctt gtgagcggac ggatatcagg
     4441 atggcaatag tagccgatca cctgggactt agttggacag agctggcaag ggaactgaat
     4501 ttttcagtgg atgaaatcaa ccaaatacga gtggaaaatc ccaattcttt aatttctcag
     4561 agcttcatgt tattaaaaaa gtgggtgacg agagacggga agaatgccac aactgatgcc
     4621 ttaacttcgg tcttaacaaa aattaaccga atagacatag taactctgct ggaaggacca
     4681 atatttgatt atgggaatat ttcaggcacc agaagctttg cagatgaaaa caatgttttc
     4741 catgacccag ttgatggtca cccttccttt caagtggagc tggagacccc aatggggttg
     4801 tactgcacac cacccacccc tttccagcaa gatgaccatt ttagtgataa ctctagcata
     4861 gagtctccct ttaggacccc cagtagactg agtgacgggc tgatgccttc ccagggaagc
     4921 atagagcatc cagcaggtgg acctccagtg gtaactgcag aagacacttc tttagaagac
     4981 agcaaaatgg acgattcagt aacggtaaca gaaacggctg acccactgga cgtagatgag
     5041 agccagttga aggacctgtg tcagagcgag tgtgctcact gctgggcgag tgtgcccggg
     5101 gtcccaagcg gcggtccgca ggcagagcca ctgagagcgc agactagaaa agtaggcgtg
     5161 agctctgaac agcaggagaa aggagactct ggtcctgagg aggagatggc ggacgacaag
     5221 gtcagatctc tgtttgagga cattcaactt gaagaagtag aggctgagga gatgacagaa
     5281 gacgaggggc aggctatact taaccgtgtt ccgcgagcag aactggcaat gtcttcactt
     5341 gcaggttggc agaacgagac gccaagtgga agcctagagt ccccggcgca agcgcgaaga
     5401 ataaccggtg ggttactgga ccgtctggac gacagctctg accaggttcg ggatcccatt
     5461 acctcatacc tcacaggaga agctgggaag ttcgaagcaa acggaaacca cgcagaagtc
     5521 attccagaag caaaggccaa ggcctacttt cctgaatccc aaaacgatat agggaaacag
     5581 agcatcaagg agaacttgaa accaaaaaca cacggatgtg gtcgcgctga ggaaccagtg
     5641 tcgcccctca cagcctacca gaaatctcta gaagaaacca gcaagcttgt catagaagac
     5701 gcacctaaac cctgtgtgcc tgtcggcatg aaaaagatga ccaggactcc ggctgacggc
     5761 aaagccaggc tcaacctcca ggaagaggag gggtccgcca ggtcagagcc taagcaggga
     5821 gaaggctata aggtgaaaac aaagaaggaa atccggaatg tggagaagaa agcccactag
     5881 tgacggtgac gtcagtccag gaccacgcgt tcgtactgcc agtattgaga aactcaccag
     5941 agatcagcag ggaggagaat ctctagcaag agcggagtgt ggatctgcca ccccacacat
     6001 cagtgacatg tttggggttt tgggtttttt tggttttttt ttttaatgca gaaggataaa
     6061 gaaaatcacc ttttttttta tttagcatga gccaatttac agagcatgga gactcacttt
     6121 cattcccggc gctgacacgc gtgcactaag caagtgcaat gtaagataca agaagccatg
     6181 ttgttcagac tcagcctcaa gtaatttggt gtcactttcg gagaagacag acaaacaacg
     6241 acacctgtgc caccggaagg agggacagca caagatggag cgatcaaatc cagaagacac
     6301 actgaaatta ctaaatccac aacagctcgc cttatttttc ttggacccaa actaactgtc
     6361 agggtataaa cactgtttgt ttcttttttt tttttttaaa gaaaaaataa taataaaaaa
     6421 aatcaatagt tttgctgtaa ataataacac tgtaaattct aacagaagaa actacaataa
     6481 agaattataa ggcacctgcc tcacggaaca caaagatacc acaaacgcgt ccaatgacag
     6541 gcgtaccaag tggcctcacc ctggacaagg acgggaatct ggcgcgtgcg ggacgctctc
     6601 tcactgactc ctgtatatta gcaattatga tgtttgtaca cgcaaaactg ctcgcttggt
     6661 tttaaaaaga aaatgcaaat ctttaaaaaa aaaaaaaaag aaatctgctg caaaatttaa
     6721 ataattcccc cagcgaggag gaattctgta gttctgtgaa gagaagaatt tttttccttc
     6781 agaatatact aatattttga tgcatgcata tctccttatt ttgattaaac cttttccaat
     6841 tttgcaaaca ctacagtctc ctgcaacacg ggagatttta cctgtaaaca caaagccctt
     6901 catgtaatat ttattgctat tgccaatttt ttcaatgaaa tgaccaaaaa tgggagaaaa
     6961 aaaaaaaaca actatacagt agtttgcttg ggggtggggg gaggggcgct gttagtgctt
     7021 acagggggga aaatgcttgc cactgtagag gtggatggtg cttacaagag gccccagtca
     7081 tgggtattta aaaaaaatgg actgaccgga aacccgtatc tagcaggatc gaagtgcact
     7141 gtaaaaaaaa aaaaaaaaaa aagggaaaaa gaaaaaaaaa aaagatgact gtattgtgta
     7201 ctggctctga gatgtagacc cccttcagca agccaatcag tagtcaccat cctagcaatg
     7261 tccccgttag gttagcgggg ctgtcgcatt ttatagagca tttctctttt gggtttggtg
     7321 agattccttc gttcactatc ttaacttgaa atcgacctcc aacggacacc tcgctctaaa
     7381 tgacatgtat gagaaaagca gacgctggat aacctagttg attatttaag catataaaat
     7441 aaaccgtgtt caactcttcc ctta
//
